Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003661

Physical Location & Seq

Genomic Coordinates Reverse (-)

7262537 .. 7263792

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1066700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGACGGATGAAAATATTTCTAAAGGCAGACATCAACATCAGGAAGAAGACGACGACAATGATGGTGCAGATGATGGTGAAGGGGCTTAAGGATTTTGGTCTGGATGCACAGAAGCGAAAGCTGCAAGCTTTTGATGAGATGGACTATGAAGATGGATGTGAAGTTGAGGTGAGAGATGGAGATCTGACAGATGGAGATGAAGTTGAGAATGATGAGGAGAATGATATTGAAAATGGTAAGGATGATGCACTTGGGGTTGTAGATGTTATCGATGAAAAGTCTGAAAGTCCTTTAGAAGAAGCTGGGGACCTGCCTAAGCCCAAGTCAGAGGAGAAGAAGAACAAATCAGGAGCCACAATTAAAAAGGAGGTCAGAGCACAGTTAGTAAGAAAAGAGACTGACAGGTCAATATTTGTGTCAGCGAACGGGTTCCACTTTGAGGTCCATTTTAAATTTACAGATGCACCTCATATTTTGCTGGCTCAGATTGCTCAGCGGACAGCCCAGAAGGTTTGTATGCAAAGATCTGGCAATGTAGCTGACTGTAAACAAATTACTTGTGACGAAAATCAAGTCCTCTTATACGGAAAGGATCCTGAGAATAAACAAAGCTATTCATCCAAGGAAAAGAAGGAGATGGCAGCTCTGCAGACCACTGGAGTGGATTTCCGTACATTTTGGAAATTGCAAGATGTTCTTGATGTCAGGTATTTATATTCCAATAACATACATGCTATGCATAGCCGACCCCACTTAGTGGGAAAAGGCTTTGTTGTTGTTGTTGTTGTAACATACATGCTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005911 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

270

Amino Acids

30.65

Weight (kDa)

5.65

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57660 AT3G57660
fragaria_vesca	FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g35030 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210
malus_domestica	MD12G1066600.v1.1 MD14G1066700.v1.1
prunus_persica	Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1
pyrus_communis	pycom12g05800 pycom14g05430
rosa_chinensis	RchiOBHm_Chr3g0481021
rosa_laevigata	RLG00000023431
rosa_multiflora	Rmu_sc0002927.1_g000058
rosa_roxburghii	Rroxscaffold_6G00400730
rosa_rugosa	Rorug03G0189100
rosa_samantha	Rh3AG240000 Rh3BG275100 Rh3CG270600 Rh3DG266500
rosa_wichuraiana	Rw0G008430 Rw3G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	760
AciI	CCGC	1 cut(s)	499
AclWI	GGATC	2 cut(s)	590, 603
AcsI	RAATTY	1 cut(s)	455
AdeI	CACNNNGTG	1 cut(s)	760
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	2 cut(s)	442, 760
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	233
AleI	CACNNNNGTG	1 cut(s)	662
AluBI	AGCT	6 cut(s)	124, 131, 305, 542, 615, 647
AluI	AGCT	6 cut(s)	124, 131, 305, 542, 615, 647
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	590, 603
ApeKI	GCWGC	2 cut(s)	124, 644
ApoI	RAATTY	1 cut(s)	455
ArsI	GACNNNNNNTTYG	2 cut(s)	561, 593
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	310, 445
AsuHPI	GGTGA	2 cut(s)	91, 184
AvaII	GGWCC	2 cut(s)	310, 445
BamHI	GGATCC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	111, 656
BccI	CCATC	7 cut(s)	58, 70, 136, 149, 173, 188, 634
BcoDI	GTCTC	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	650
BfrI	CTTAAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	321
BglII	AGATCT	2 cut(s)	184, 527
BisI	GCNGC	2 cut(s)	125, 645
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	2 cut(s)	126, 646
Bme18I	GGWCC	2 cut(s)	310, 445
BmgT120I	GGNCC	2 cut(s)	310, 445
BmiI	GGNNCC	4 cut(s)	311, 355, 434, 597
BmsI	GCATC	3 cut(s)	97, 238, 454
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 760
Bse1I	ACTGG	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	541
Bse8I	GATNNNNATC	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	5 cut(s)	15, 112, 164, 250, 620
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	442, 760
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	3 cut(s)	500, 509, 591
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	2 cut(s)	233, 347
BseXI	GCAGC	2 cut(s)	111, 656
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	442, 760
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	184, 527, 595
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	1 cut(s)	499
BspCNI	CTCAG	3 cut(s)	499, 508, 592
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	4 cut(s)	311, 355, 434, 597
BspMAI	CTGCAG	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	2 cut(s)	590, 603
BspTI	CTTAAG	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	3 cut(s)	184, 527, 595
BssT1I	CCWWGG	1 cut(s)	624
Bst4CI	ACNGT	2 cut(s)	384, 548
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	129, 483
BstDEI	CTNAG	5 cut(s)	318, 486, 495, 600, 757
BstF5I	GGATG	5 cut(s)	15, 112, 164, 250, 620
BstKTI	GATC	3 cut(s)	187, 530, 598
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	3 cut(s)	184, 527, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 491
BstNSI	RCATGY	2 cut(s)	737, 802
BstSFI	CTRYAG	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	111, 656
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	3 cut(s)	184, 527, 595
BstXI	CCANNNNNNTGG	1 cut(s)	664
BstYI	RGATCY	3 cut(s)	184, 527, 595
Bsu15I	ATCGAT	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	273
BtsCI	GGATG	5 cut(s)	15, 112, 164, 250, 620
BtsIMutI	CAGTG	1 cut(s)	657
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	129, 483
Cfr13I	GGNCC	2 cut(s)	310, 445
ClaI	ATCGAT	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	675
CviAII	CATG	2 cut(s)	734, 799
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	5 cut(s)	318, 486, 495, 600, 757
DpnI	GATC	3 cut(s)	186, 529, 597
DpnII	GATC	3 cut(s)	184, 527, 595
DraI	TTTAAA	1 cut(s)	454
DraIII	CACNNNGTG	1 cut(s)	760
DrdI	GACNNNNNNGTC	1 cut(s)	406
DseDI	GACNNNNNNGTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	310, 445
EcoO109I	RGGNCCY	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	2 cut(s)	737, 802
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	2 cut(s)	733, 798
Fnu4HI	GCNGC	2 cut(s)	125, 645
FokI	GGATG	5 cut(s)	22, 119, 171, 257, 607
Fsp4HI	GCNGC	2 cut(s)	125, 645
GluI	GCNGC	2 cut(s)	125, 645
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	681
Hin1II	CATG	2 cut(s)	737, 802
HindIII	AAGCTT	1 cut(s)	129
HphI	GGTGA	2 cut(s)	91, 184
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	5 cut(s)	189, 286, 331, 377, 489
Hpy188III	TCNNGA	5 cut(s)	43, 104, 351, 599, 701
Hpy8I	GTNNAC	1 cut(s)	551
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	76, 505, 628
HpyCH4III	ACNGT	2 cut(s)	384, 548
HpyCH4V	TGCA	9 cut(s)	70, 110, 127, 251, 467, 523, 652, 691, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 491
HpyF3I	CTNAG	5 cut(s)	318, 486, 495, 600, 757
Hsp92II	CATG	2 cut(s)	737, 802
Kzo9I	GATC	3 cut(s)	184, 527, 595
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	2 cut(s)	111, 656
LweI	GCATC	3 cut(s)	97, 238, 454
MaeIII	GTNAC	2 cut(s)	563, 790
MalI	GATC	3 cut(s)	186, 529, 597
MboI	GATC	3 cut(s)	184, 527, 595
MboII	GAAGA	6 cut(s)	58, 61, 164, 311, 349, 352
MflI	RGATCY	3 cut(s)	184, 527, 595
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	4 cut(s)	360, 455, 555, 686
MnlI	CCTC	7 cut(s)	163, 211, 325, 364, 436, 480, 590
Mph1103I	ATGCAT	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	3 cut(s)	90, 363, 453
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	499
MspCI	CTTAAG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	124, 491
NdeII	GATC	3 cut(s)	184, 527, 595
NlaIII	CATG	2 cut(s)	737, 802
NlaIV	GGNNCC	4 cut(s)	311, 355, 434, 597
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	744
NspI	RCATGY	2 cut(s)	737, 802
OliI	CACNNNNGTG	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	2 cut(s)	126, 646
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	4 cut(s)	311, 355, 434, 597
PspPI	GGNCC	2 cut(s)	310, 445
PspPPI	RGGWCCY	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	654
PsuI	RGATCY	3 cut(s)	184, 527, 595
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	90, 363, 453
SatI	GCNGC	2 cut(s)	125, 645
Sau3AI	GATC	3 cut(s)	184, 527, 595
Sau96I	GGNCC	2 cut(s)	310, 445
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	3 cut(s)	97, 238, 454
SfcI	CTRYAG	1 cut(s)	650
SinI	GGWCC	2 cut(s)	310, 445
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	360, 455, 555, 686
SsiI	CCGC	1 cut(s)	499
SspI	AATATT	2 cut(s)	18, 414
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	384, 548
TaqI	TCGA	1 cut(s)	273
TasI	AATT	4 cut(s)	360, 455, 555, 686
Tru1I	TTAA	3 cut(s)	90, 363, 453
Tru9I	TTAA	3 cut(s)	90, 363, 453
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	2 cut(s)	124, 644
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	5 cut(s)	26, 165, 216, 291, 609
TspGWI	ACGGA	3 cut(s)	22, 603, 662
TspRI	CASTG	1 cut(s)	664
Van91I	CCANNNNNTGG	1 cut(s)	760
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	310, 445
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	2 cut(s)	737, 802
XmnI	GAANNNNTTC	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.