DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57660 AT3G57660 |
| fragaria_vesca | FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g35030 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 |
| malus_domestica | MD12G1066600.v1.1 MD14G1066700.v1.1 |
| prunus_persica | Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 |
| pyrus_communis | pycom12g05800 pycom14g05430 |
| rosa_chinensis | RchiOBHm_Chr3g0481021 |
| rosa_laevigata | RLG00000023431 |
| rosa_multiflora | Rmu_sc0002927.1_g000058 |
| rosa_roxburghii | Rroxscaffold_6G00400730 |
| rosa_rugosa | Rorug03G0189100 |
| rosa_samantha | Rh3AG240000 Rh3BG275100 Rh3CG270600 Rh3DG266500 |
| rosa_wichuraiana | Rw0G008430 Rw3G021430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 270, 1871, 3729 |
| AarI | CACCTGC | 1 cut(s) | 4918 |
| Acc36I | ACCTGC | 2 cut(s) | 2068, 4918 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2995 |
| AccII | CGCG | 2 cut(s) | 186, 2325 |
| AccIII | TCCGGA | 2 cut(s) | 336, 1288 |
| AciI | CCGC | 8 cut(s) | 186, 1187, 1760, 2120, 2325, 3488, 4707, 4953 |
| AcoI | YGGCCR | 3 cut(s) | 27, 187, 3001 |
| AcsI | RAATTY | 7 cut(s) | 788, 805, 977, 1261, 1770, 2626, 3889 |
| AcuI | CTGAAG | 2 cut(s) | 494, 2034 |
| AcvI | CACGTG | 1 cut(s) | 2156 |
| AcyI | GRCGYC | 1 cut(s) | 3569 |
| AdeI | CACNNNGTG | 1 cut(s) | 437 |
| AfaI | GTAC | 8 cut(s) | 966, 1714, 1817, 2322, 2981, 3753, 4618, 4990 |
| AflIII | ACRYGT | 4 cut(s) | 203, 224, 364, 2465 |
| AjnI | CCWGG | 5 cut(s) | 675, 1423, 3406, 4216, 4709 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4152, 4184 |
| AleI | CACNNNNGTG | 1 cut(s) | 134 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1214, 1246 |
| Alw21I | GWGCWC | 3 cut(s) | 783, 1095, 3381 |
| Alw26I | GTCTC | 5 cut(s) | 947, 3920, 4331, 4431, 4880 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2129, 2399 |
| Ama87I | CYCGRG | 1 cut(s) | 2925 |
| Aor13HI | TCCGGA | 2 cut(s) | 336, 1288 |
| AoxI | GGCC | 6 cut(s) | 27, 145, 166, 187, 1225, 3001 |
| ApaI | GGGCCC | 1 cut(s) | 170 |
| ApeKI | GCWGC | 6 cut(s) | 5, 490, 1163, 2026, 3551, 4913 |
| ApoI | RAATTY | 7 cut(s) | 788, 805, 977, 1261, 1770, 2626, 3889 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 193, 225 |
| AseI | ATTAAT | 1 cut(s) | 2300 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 69, 3222, 3476, 3762, 3939, 4835 |
| AspLEI | GCGC | 1 cut(s) | 1654 |
| AspS9I | GGNCC | 9 cut(s) | 166, 167, 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| AsuC2I | CCSGG | 1 cut(s) | 1194 |
| AsuII | TTCGAA | 2 cut(s) | 485, 3766 |
| AsuNHI | GCTAGC | 1 cut(s) | 3625 |
| AvaI | CYCGRG | 1 cut(s) | 2925 |
| AvaII | GGWCC | 7 cut(s) | 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| AxyI | CCTNAGG | 1 cut(s) | 2973 |
| BaeGI | GKGCMC | 1 cut(s) | 170 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3012, 3045 |
| BamHI | GGATCC | 3 cut(s) | 1291, 4286, 4537 |
| BanII | GRGCYC | 3 cut(s) | 170, 1550, 2061 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3828, 3860 |
| BbrPI | CACGTG | 1 cut(s) | 2156 |
| BbsI | GAAGAC | 2 cut(s) | 2957, 4448 |
| Bbv12I | GWGCWC | 3 cut(s) | 783, 1095, 3381 |
| BbvI | GCAGC | 5 cut(s) | 502, 1150, 2038, 3538, 4925 |
| BceAI | ACGGC | 4 cut(s) | 14, 42, 2988, 3705 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1643, 1677, 4916, 4950 |
| BciT130I | CCWGG | 5 cut(s) | 677, 1425, 3408, 4218, 4711 |
| BciVI | GTATCC | 2 cut(s) | 1891, 3041 |
| BcnI | CCSGG | 1 cut(s) | 1194 |
| BcoDI | GTCTC | 5 cut(s) | 947, 3920, 4331, 4431, 4880 |
| BfaI | CTAG | 9 cut(s) | 173, 435, 2109, 2525, 2852, 3626, 3809, 4247, 4956 |
| BfmI | CTRYAG | 3 cut(s) | 2400, 3441, 4062 |
| BfuAI | ACCTGC | 2 cut(s) | 2068, 4918 |
| BfuI | GTATCC | 2 cut(s) | 1891, 3041 |
| BglII | AGATCT | 4 cut(s) | 820, 3537, 3953, 4469 |
| BlpI | GCTNAGC | 1 cut(s) | 4251 |
| BmcAI | AGTACT | 2 cut(s) | 1714, 2981 |
| Bme1390I | CCNGG | 6 cut(s) | 677, 1194, 1425, 3408, 4218, 4711 |
| Bme18I | GGWCC | 7 cut(s) | 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| BmeT110I | CYCGRG | 1 cut(s) | 2925 |
| BmgT120I | GGNCC | 9 cut(s) | 166, 167, 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| BmrFI | CCNGG | 6 cut(s) | 677, 1194, 1425, 3408, 4218, 4711 |
| BmrI | ACTGGG | 1 cut(s) | 1635 |
| BmtI | GCTAGC | 1 cut(s) | 3629 |
| BmuI | ACTGGG | 1 cut(s) | 1635 |
| BpiI | GAAGAC | 2 cut(s) | 2957, 4448 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 413, 445, 1060, 1092, 1351, 1383 |
| BpmI | CTGGAG | 4 cut(s) | 698, 1070, 1446, 3429 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3618 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4251 |
| Bpu14I | TTCGAA | 2 cut(s) | 485, 3766 |
| BpuEI | CTTGAG | 5 cut(s) | 740, 1081, 1232, 3098, 3755 |
| BpuMI | CCSGG | 1 cut(s) | 1194 |
| Bsa29I | ATCGAT | 2 cut(s) | 4197, 4834 |
| BsaAI | YACGTR | 4 cut(s) | 225, 1819, 2156, 3751 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3936, 4512 |
| BsaHI | GRCGYC | 1 cut(s) | 3569 |
| BsaJI | CCNNGG | 9 cut(s) | 30, 993, 1370, 2655, 2664, 2909, 3514, 4566, 4710 |
| BsaWI | WCCGGW | 2 cut(s) | 336, 1288 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3402, 3432, 4833, 4863 |
| Bse118I | RCCGGY | 2 cut(s) | 1272, 3431 |
| Bse21I | CCTNAGG | 1 cut(s) | 2973 |
| Bse3DI | GCAATG | 3 cut(s) | 643, 2989, 3587 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3936, 4512 |
| BseAI | TCCGGA | 2 cut(s) | 336, 1288 |
| BseBI | CCWGG | 5 cut(s) | 677, 1425, 3408, 4218, 4711 |
| BseCI | ATCGAT | 2 cut(s) | 4197, 4834 |
| BseDI | CCNNGG | 9 cut(s) | 30, 993, 1370, 2655, 2664, 2909, 3514, 4566, 4710 |
| BseJI | GATNNNNATC | 2 cut(s) | 3936, 4512 |
| BseMI | GCAATG | 3 cut(s) | 643, 2989, 3587 |
| BseRI | GAGGAG | 2 cut(s) | 2291, 4163 |
| BseSI | GKGCMC | 1 cut(s) | 170 |
| BseX3I | CGGCCG | 1 cut(s) | 27 |
| BseXI | GCAGC | 5 cut(s) | 502, 1150, 2038, 3538, 4925 |
| BseYI | CCCAGC | 1 cut(s) | 4238 |
| BsgI | GTGCAG | 1 cut(s) | 4011 |
| Bsh1236I | CGCG | 2 cut(s) | 186, 2325 |
| Bsh1285I | CGRYCG | 1 cut(s) | 30 |
| BshFI | GGCC | 6 cut(s) | 29, 147, 168, 189, 1227, 3003 |
| BshVI | ATCGAT | 2 cut(s) | 4197, 4834 |
| BsiEI | CGRYCG | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 3 cut(s) | 783, 1095, 3381 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2925 |
| BsiSI | CCGG | 7 cut(s) | 337, 1194, 1234, 1273, 1289, 2039, 3432 |
| BslFI | GGGAC | 6 cut(s) | 696, 1440, 1613, 2852, 3504, 4256 |
| BsmAI | GTCTC | 5 cut(s) | 947, 3920, 4331, 4431, 4880 |
| BsmFI | GGGAC | 6 cut(s) | 696, 1440, 1613, 2852, 3504, 4256 |
| BsmI | GAATGC | 3 cut(s) | 759, 1399, 5033 |
| BsnI | GGCC | 6 cut(s) | 29, 147, 168, 189, 1227, 3003 |
| BsoBI | CYCGRG | 1 cut(s) | 2925 |
| Bsp119I | TTCGAA | 2 cut(s) | 485, 3766 |
| Bsp120I | GGGCCC | 1 cut(s) | 166 |
| Bsp1286I | GDGCHC | 6 cut(s) | 170, 783, 1095, 1550, 2061, 3381 |
| Bsp13I | TCCGGA | 2 cut(s) | 336, 1288 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4251 |
| Bsp19I | CCATGG | 1 cut(s) | 2909 |
| BspACI | CCGC | 8 cut(s) | 186, 1187, 1760, 2120, 2325, 3488, 4707, 4953 |
| BspANI | GGCC | 6 cut(s) | 29, 147, 168, 189, 1227, 3003 |
| BspDI | ATCGAT | 2 cut(s) | 4197, 4834 |
| BspEI | TCCGGA | 2 cut(s) | 336, 1288 |
| BspFNI | CGCG | 2 cut(s) | 186, 2325 |
| BspMAI | CTGCAG | 1 cut(s) | 2404 |
| BspMI | ACCTGC | 2 cut(s) | 2068, 4918 |
| BspOI | GCTAGC | 1 cut(s) | 3629 |
| BspT104I | TTCGAA | 2 cut(s) | 485, 3766 |
| BsrDI | GCAATG | 3 cut(s) | 643, 2989, 3587 |
| BsrFI | RCCGGY | 2 cut(s) | 1272, 3431 |
| BssAI | RCCGGY | 2 cut(s) | 1272, 3431 |
| BssECI | CCNNGG | 9 cut(s) | 30, 993, 1370, 2655, 2664, 2909, 3514, 4566, 4710 |
| BssNI | GRCGYC | 1 cut(s) | 3569 |
| BssT1I | CCWWGG | 6 cut(s) | 993, 2655, 2664, 2909, 3514, 4566 |
| Bst2UI | CCWGG | 5 cut(s) | 677, 1425, 3408, 4218, 4711 |
| Bst6I | CTCTTC | 3 cut(s) | 60, 513, 699 |
| BstACI | GRCGYC | 1 cut(s) | 3569 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 576 |
| BstBAI | YACGTR | 4 cut(s) | 225, 1819, 2156, 3751 |
| BstBI | TTCGAA | 2 cut(s) | 485, 3766 |
| BstC8I | GCNNGC | 6 cut(s) | 264, 1270, 1694, 3001, 3627, 4587 |
| BstDSI | CCRYGG | 3 cut(s) | 30, 1370, 2909 |
| BstEII | GGTNACC | 1 cut(s) | 94 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2668 |
| BstFNI | CGCG | 2 cut(s) | 186, 2325 |
| BstHHI | GCGC | 1 cut(s) | 1654 |
| BstMAI | GTCTC | 5 cut(s) | 947, 3920, 4331, 4431, 4880 |
| BstMCI | CGRYCG | 1 cut(s) | 30 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 35, 195, 576, 3000, 4591 |
| BstNI | CCWGG | 5 cut(s) | 677, 1425, 3408, 4218, 4711 |
| BstNSI | RCATGY | 8 cut(s) | 356, 368, 1658, 1696, 2469, 3585, 4506, 4679 |
| BstPI | GGTNACC | 1 cut(s) | 94 |
| BstSCI | CCNGG | 6 cut(s) | 675, 1192, 1423, 3406, 4216, 4709 |
| BstSFI | CTRYAG | 3 cut(s) | 2400, 3441, 4062 |
| BstSLI | GKGCMC | 1 cut(s) | 170 |
| BstSNI | TACGTA | 1 cut(s) | 1819 |
| BstUI | CGCG | 2 cut(s) | 186, 2325 |
| BstV1I | GCAGC | 5 cut(s) | 502, 1150, 2038, 3538, 4925 |
| BstV2I | GAAGAC | 2 cut(s) | 2957, 4448 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 206, 632, 917, 1648, 2916 |
| BstZI | CGGCCG | 1 cut(s) | 27 |
| Bsu15I | ATCGAT | 2 cut(s) | 4197, 4834 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2973 |
| BsuI | GTATCC | 2 cut(s) | 1891, 3041 |
| BsuRI | GGCC | 6 cut(s) | 29, 147, 168, 189, 1227, 3003 |
| BsuTUI | ATCGAT | 2 cut(s) | 4197, 4834 |
| BtgI | CCRYGG | 3 cut(s) | 30, 1370, 2909 |
| BtgZI | GCGATG | 2 cut(s) | 176, 4521 |
| BtsI | GCAGTG | 1 cut(s) | 2085 |
| BtsIMutI | CAGTG | 7 cut(s) | 790, 911, 1837, 2085, 2607, 3467, 3648 |
| BveI | ACCTGC | 2 cut(s) | 2068, 4918 |
| Cac8I | GCNNGC | 6 cut(s) | 264, 1270, 1694, 3001, 3627, 4587 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2129, 2399 |
| CfoI | GCGC | 1 cut(s) | 1654 |
| Cfr10I | RCCGGY | 2 cut(s) | 1272, 3431 |
| Cfr13I | GGNCC | 9 cut(s) | 166, 167, 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| ClaI | ATCGAT | 2 cut(s) | 4197, 4834 |
| CseI | GACGC | 2 cut(s) | 2513, 3577 |
| Csp6I | GTAC | 8 cut(s) | 965, 1713, 1816, 2321, 2980, 3752, 4617, 4989 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 442, 477 |
| CviQI | GTAC | 8 cut(s) | 965, 1713, 1816, 2321, 2980, 3752, 4617, 4989 |
| DraIII | CACNNNGTG | 1 cut(s) | 437 |
| EaeI | YGGCCR | 3 cut(s) | 27, 187, 3001 |
| EagI | CGGCCG | 1 cut(s) | 27 |
| Eam1104I | CTCTTC | 3 cut(s) | 60, 513, 699 |
| EarI | CTCTTC | 3 cut(s) | 60, 513, 699 |
| EciI | GGCGGA | 1 cut(s) | 2109 |
| EclXI | CGGCCG | 1 cut(s) | 27 |
| Eco105I | TACGTA | 1 cut(s) | 1819 |
| Eco130I | CCWWGG | 6 cut(s) | 993, 2655, 2664, 2909, 3514, 4566 |
| Eco147I | AGGCCT | 1 cut(s) | 1227 |
| Eco24I | GRGCYC | 3 cut(s) | 170, 1550, 2061 |
| Eco32I | GATATC | 2 cut(s) | 901, 4860 |
| Eco47I | GGWCC | 7 cut(s) | 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| Eco52I | CGGCCG | 1 cut(s) | 27 |
| Eco57I | CTGAAG | 2 cut(s) | 494, 2034 |
| Eco72I | CACGTG | 1 cut(s) | 2156 |
| Eco81I | CCTNAGG | 1 cut(s) | 2973 |
| Eco88I | CYCGRG | 1 cut(s) | 2925 |
| Eco91I | GGTNACC | 1 cut(s) | 94 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2668 |
| EcoO109I | RGGNCCY | 3 cut(s) | 683, 2866, 4243 |
| EcoO65I | GGTNACC | 1 cut(s) | 94 |
| EcoRI | GAATTC | 1 cut(s) | 788 |
| EcoRII | CCWGG | 5 cut(s) | 675, 1423, 3406, 4216, 4709 |
| EcoRV | GATATC | 2 cut(s) | 901, 4860 |
| EcoT14I | CCWWGG | 6 cut(s) | 993, 2655, 2664, 2909, 3514, 4566 |
| EcoT22I | ATGCAT | 2 cut(s) | 2457, 3065 |
| EcoT38I | GRGCYC | 3 cut(s) | 170, 1550, 2061 |
| ErhI | CCWWGG | 6 cut(s) | 993, 2655, 2664, 2909, 3514, 4566 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 68, 100, 4626, 4658 |
| FaqI | GGGAC | 6 cut(s) | 696, 1440, 1613, 2852, 3504, 4256 |
| FauI | CCCGC | 1 cut(s) | 3481 |
| FauNDI | CATATG | 1 cut(s) | 3171 |
| FriOI | GRGCYC | 3 cut(s) | 170, 1550, 2061 |
| FspBI | CTAG | 9 cut(s) | 173, 435, 2109, 2525, 2852, 3626, 3809, 4247, 4956 |
| GlaI | GCGC | 1 cut(s) | 1653 |
| GsaI | CCCAGC | 1 cut(s) | 4242 |
| GsuI | CTGGAG | 4 cut(s) | 698, 1070, 1446, 3429 |
| HaeIII | GGCC | 6 cut(s) | 29, 147, 168, 189, 1227, 3003 |
| HapII | CCGG | 7 cut(s) | 337, 1194, 1234, 1273, 1289, 2039, 3432 |
| HgaI | GACGC | 2 cut(s) | 2513, 3577 |
| HhaI | GCGC | 1 cut(s) | 1654 |
| Hin1I | GRCGYC | 1 cut(s) | 3569 |
| Hin6I | GCGC | 1 cut(s) | 1652 |
| HinP1I | GCGC | 1 cut(s) | 1652 |
| HincII | GTYRAC | 4 cut(s) | 1381, 1405, 3456, 4768 |
| HindII | GTYRAC | 4 cut(s) | 1381, 1405, 3456, 4768 |
| HindIII | AAGCTT | 2 cut(s) | 1785, 3731 |
| HpaII | CCGG | 7 cut(s) | 337, 1194, 1234, 1273, 1289, 2039, 3432 |
| Hpy99I | CGWCG | 5 cut(s) | 25, 28, 65, 1113, 3243 |
| HpyCH4IV | ACGT | 7 cut(s) | 203, 224, 1818, 1909, 2155, 3750, 3961 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 35, 195, 576, 3000, 4591 |
| HpySE526I | ACGT | 7 cut(s) | 203, 224, 1818, 1909, 2155, 3750, 3961 |
| Hsp92I | GRCGYC | 1 cut(s) | 3569 |
| HspAI | GCGC | 1 cut(s) | 1652 |
| KflI | GGGWCCC | 2 cut(s) | 683, 2866 |
| Kpn2I | TCCGGA | 2 cut(s) | 336, 1288 |
| LmnI | GCTCC | 7 cut(s) | 771, 1015, 1195, 1427, 2278, 3376, 3622 |
| Lsp1109I | GCAGC | 5 cut(s) | 502, 1150, 2038, 3538, 4925 |
| MaeI | CTAG | 9 cut(s) | 173, 435, 2109, 2525, 2852, 3626, 3809, 4247, 4956 |
| MaeII | ACGT | 7 cut(s) | 203, 224, 1818, 1909, 2155, 3750, 3961 |
| MaeIII | GTNAC | 7 cut(s) | 94, 932, 1363, 1583, 2125, 3508, 3679 |
| MfeI | CAATTG | 1 cut(s) | 374 |
| MhlI | GDGCHC | 6 cut(s) | 170, 783, 1095, 1550, 2061, 3381 |
| MlyI | GAGTC | 6 cut(s) | 113, 422, 431, 2434, 4798, 4862 |
| MmeI | TCCRAC | 5 cut(s) | 44, 854, 2730, 2842, 3813 |
| Mph1103I | ATGCAT | 2 cut(s) | 2457, 3065 |
| MroI | TCCGGA | 2 cut(s) | 336, 1288 |
| MroXI | GAANNNNTTC | 6 cut(s) | 69, 3222, 3476, 3762, 3939, 4835 |
| MslI | CAYNNNNRTG | 3 cut(s) | 134, 223, 4812 |
| MspA1I | CMGCKG | 1 cut(s) | 3026 |
| MspI | CCGG | 7 cut(s) | 337, 1194, 1234, 1273, 1289, 2039, 3432 |
| MspR9I | CCNGG | 6 cut(s) | 677, 1194, 1425, 3408, 4218, 4711 |
| MunI | CAATTG | 1 cut(s) | 374 |
| Mva1269I | GAATGC | 3 cut(s) | 759, 1399, 5033 |
| MvaI | CCWGG | 5 cut(s) | 677, 1425, 3408, 4218, 4711 |
| MvnI | CGCG | 2 cut(s) | 186, 2325 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 35, 195, 576, 3000, 4591 |
| NciI | CCSGG | 1 cut(s) | 1194 |
| NcoI | CCATGG | 1 cut(s) | 2909 |
| NdeI | CATATG | 1 cut(s) | 3171 |
| NheI | GCTAGC | 1 cut(s) | 3625 |
| NmuCI | GTSAC | 2 cut(s) | 1583, 3508 |
| NsiI | ATGCAT | 2 cut(s) | 2457, 3065 |
| NspI | RCATGY | 8 cut(s) | 356, 368, 1658, 1696, 2469, 3585, 4506, 4679 |
| NspV | TTCGAA | 2 cut(s) | 485, 3766 |
| OliI | CACNNNNGTG | 1 cut(s) | 134 |
| PaeI | GCATGC | 1 cut(s) | 1696 |
| PaeR7I | CTCGAG | 1 cut(s) | 2925 |
| PaqCI | CACCTGC | 1 cut(s) | 4918 |
| PceI | AGGCCT | 1 cut(s) | 1227 |
| PciI | ACATGT | 2 cut(s) | 364, 2465 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 1588, 4761, 4845, 4862 |
| PctI | GAATGC | 3 cut(s) | 759, 1399, 5033 |
| PdmI | GAANNNNTTC | 6 cut(s) | 69, 3222, 3476, 3762, 3939, 4835 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2995 |
| PfoI | TCCNGGA | 2 cut(s) | 1192, 1423 |
| PleI | GAGTC | 6 cut(s) | 113, 422, 430, 2433, 4798, 4861 |
| PmaCI | CACGTG | 1 cut(s) | 2156 |
| PmlI | CACGTG | 1 cut(s) | 2156 |
| PpsI | GAGTC | 6 cut(s) | 113, 422, 430, 2433, 4798, 4861 |
| Ppu21I | YACGTR | 4 cut(s) | 225, 1819, 2156, 3751 |
| PpuMI | RGGWCCY | 3 cut(s) | 683, 2866, 4243 |
| PscI | ACATGT | 2 cut(s) | 364, 2465 |
| PshBI | ATTAAT | 1 cut(s) | 2300 |
| PsiI | TTATAA | 3 cut(s) | 270, 1871, 3729 |
| Psp5II | RGGWCCY | 3 cut(s) | 683, 2866, 4243 |
| Psp6I | CCWGG | 5 cut(s) | 675, 1423, 3406, 4216, 4709 |
| PspCI | CACGTG | 1 cut(s) | 2156 |
| PspEI | GGTNACC | 1 cut(s) | 94 |
| PspFI | CCCAGC | 1 cut(s) | 4238 |
| PspGI | CCWGG | 5 cut(s) | 675, 1423, 3406, 4216, 4709 |
| PspOMI | GGGCCC | 1 cut(s) | 166 |
| PspPI | GGNCC | 9 cut(s) | 166, 167, 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| PspPPI | RGGWCCY | 3 cut(s) | 683, 2866, 4243 |
| PstI | CTGCAG | 1 cut(s) | 2404 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2129, 2399 |
| PvuII | CAGCTG | 1 cut(s) | 3026 |
| RsaI | GTAC | 8 cut(s) | 966, 1714, 1817, 2322, 2981, 3753, 4618, 4990 |
| RsaNI | GTAC | 8 cut(s) | 965, 1713, 1816, 2321, 2980, 3752, 4617, 4989 |
| RseI | CAYNNNNRTG | 3 cut(s) | 134, 223, 4812 |
| Sau96I | GGNCC | 9 cut(s) | 166, 167, 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| ScaI | AGTACT | 2 cut(s) | 1714, 2981 |
| SchI | GAGTC | 6 cut(s) | 113, 422, 431, 2434, 4798, 4862 |
| ScrFI | CCNGG | 6 cut(s) | 677, 1194, 1425, 3408, 4218, 4711 |
| SduI | GDGCHC | 6 cut(s) | 170, 783, 1095, 1550, 2061, 3381 |
| SfcI | CTRYAG | 3 cut(s) | 2400, 3441, 4062 |
| Sfr274I | CTCGAG | 1 cut(s) | 2925 |
| SfuI | TTCGAA | 2 cut(s) | 485, 3766 |
| SinI | GGWCC | 7 cut(s) | 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| SlaI | CTCGAG | 1 cut(s) | 2925 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 134, 223, 4812 |
| SmlI | CTYRAG | 6 cut(s) | 719, 1096, 1211, 2925, 3077, 3734 |
| SmoI | CTYRAG | 6 cut(s) | 719, 1096, 1211, 2925, 3077, 3734 |
| SnaBI | TACGTA | 1 cut(s) | 1819 |
| SphI | GCATGC | 1 cut(s) | 1696 |
| SseBI | AGGCCT | 1 cut(s) | 1227 |
| SsiI | CCGC | 8 cut(s) | 186, 1187, 1760, 2120, 2325, 3488, 4707, 4953 |
| SspI | AATATT | 1 cut(s) | 3782 |
| SspMI | CTAG | 9 cut(s) | 173, 435, 2109, 2525, 2852, 3626, 3809, 4247, 4956 |
| StuI | AGGCCT | 1 cut(s) | 1227 |
| StyD4I | CCNGG | 6 cut(s) | 675, 1192, 1423, 3406, 4216, 4709 |
| StyI | CCWWGG | 6 cut(s) | 993, 2655, 2664, 2909, 3514, 4566 |
| TaiI | ACGT | 7 cut(s) | 206, 227, 1821, 1912, 2158, 3753, 3964 |
| TatI | WGTACW | 2 cut(s) | 1712, 2979 |
| TauI | GCSGC | 4 cut(s) | 189, 1190, 2328, 4709 |
| TscAI | CASTG | 7 cut(s) | 790, 911, 1837, 2092, 2607, 3474, 3655 |
| TseFI | GTSAC | 2 cut(s) | 1583, 3508 |
| TseI | GCWGC | 6 cut(s) | 5, 490, 1163, 2026, 3551, 4913 |
| Tsp45I | GTSAC | 2 cut(s) | 1583, 3508 |
| TspGWI | ACGGA | 6 cut(s) | 971, 1359, 4710, 4753, 4770, 4854 |
| TspRI | CASTG | 7 cut(s) | 790, 911, 1837, 2092, 2607, 3474, 3655 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2995 |
| VpaK11BI | GGWCC | 7 cut(s) | 683, 1454, 2365, 2866, 4243, 4312, 4384 |
| VspI | ATTAAT | 1 cut(s) | 2300 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2668 |
| XapI | RAATTY | 7 cut(s) | 788, 805, 977, 1261, 1770, 2626, 3889 |
| XceI | RCATGY | 8 cut(s) | 356, 368, 1658, 1696, 2469, 3585, 4506, 4679 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2061, 2996 |
| XhoI | CTCGAG | 1 cut(s) | 2925 |
| XmnI | GAANNNNTTC | 6 cut(s) | 69, 3222, 3476, 3762, 3939, 4835 |
| XspI | CTAG | 9 cut(s) | 173, 435, 2109, 2525, 2852, 3626, 3809, 4247, 4956 |
| ZrmI | AGTACT | 2 cut(s) | 1714, 2981 |
| Zsp2I | ATGCAT | 2 cut(s) | 2457, 3065 |