Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004860

Physical Location & Seq

Genomic Coordinates Reverse (-)

25650619 .. 25651497

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGAATTGTAAGCACTCAGGTTGAGAAAGTTACTAATAGTGATGCAAGGAACAAAAAGAGTTCTCTTCCTCATCCAGTTGGGTTTAAAGAGCAATTTGTGCCTCATAAACAGGCCAGTATAGCAGCTTACGCTAATGATGATGCTATGAAGGGGTTTTCTAACTCAAGTAGAAATCATGTCTATCTGAGCAGAGAATTGGTGGCTATAGTACTGTTGATGTATTTGGGATTCTCTGAACATATTTGGATCCTTGGTGATTCTCATGGAGCCAAAGTCATAGCAGTTCGCTCCTTTTATCAGCCTATCACCGCTGTAGTTTCTAATGATCAGGGTTTGGATTGGATACTTATGTTTATGGCGATACAAGGAAATGGTCTTTGGGTACATTTGGATGATATTTGTTTTCTTCAGGCTTCCTTAATGCTGGTAGGGAACGTCAATGATTTTGTGTCTGTAATATGGGGTGCATTTGGACTTGCTTGCTGGAAGGATTCGAACTGCTTGCTTCACCTCGGGTTTGTTGGATCTCAGAGTGCCTGGTTTAAGAGGACGTATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.74

Weight (kDa)

7.05

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35081 FvH4_5g35082 FvH4_5g35230
rosa_chinensis	RchiOBHm_Chr0c11g0499531 RchiOBHm_Chr7g0236081 RchiOBHm_Chr7g0236361
rosa_multiflora	Rmu_sc0002449.1_g000017
rosa_roxburghii	Rroxscaffold_3G00225120 Rroxscaffold_3G00225130 Rroxscaffold_3G00225150 Rroxscaffold_3G00225160 Rroxscaffold_3G00225180 Rroxscaffold_3G00225200 Rroxscaffold_3G00225430 Rroxscaffold_3G00225440
rosa_rugosa	Rorug07G0117500 Rorug07G0286400 Rorug07G0293500 Rorug07G0293600 Rorug07G0296800
rosa_samantha	Rh1DG165500 Rh5DG246000 Rh7AG448400 Rh7AG448500 Rh7AG448900 Rh7AG449000 Rh7AG449100 Rh7AG449200
rosa_wichuraiana	Rw0G007960 Rw0G019900 Rw5G021720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	3 cut(s)	244, 257, 535
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	213, 387
AjnI	CCWGG	1 cut(s)	539
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	3 cut(s)	244, 257, 535
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	269, 301, 503
AsuII	TTCGAA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	515
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BamHI	GGATCC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	1 cut(s)	541
BciVI	GTATCC	1 cut(s)	339
BclI	TGATCA	1 cut(s)	328
BfmI	CTRYAG	2 cut(s)	207, 315
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	541
BmeT110I	CYCGRG	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	251, 271
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	2 cut(s)	34, 133
Bpu14I	TTCGAA	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	253, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse1I	ACTGG	2 cut(s)	77, 117
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	2 cut(s)	253, 514
BseGI	GGATG	2 cut(s)	73, 400
BseMII	CTCAG	3 cut(s)	32, 179, 545
BseNI	ACTGG	2 cut(s)	77, 117
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	515
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	515
Bsp119I	TTCGAA	1 cut(s)	497
Bsp143I	GATC	3 cut(s)	249, 328, 527
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	3 cut(s)	31, 180, 544
BspLI	GGNNCC	2 cut(s)	251, 271
BspPI	GGATC	3 cut(s)	244, 257, 535
BspT104I	TTCGAA	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	77, 117
BssECI	CCNNGG	2 cut(s)	253, 514
BssMI	GATC	3 cut(s)	249, 328, 527
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	484, 506
BstDEI	CTNAG	3 cut(s)	18, 188, 531
BstF5I	GGATG	2 cut(s)	73, 400
BstKTI	GATC	3 cut(s)	252, 331, 530
BstMBI	GATC	3 cut(s)	249, 328, 527
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 122, 131
BstNI	CCWGG	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	2 cut(s)	207, 315
BstV1I	GCAGC	1 cut(s)	137
BstX2I	RGATCY	2 cut(s)	249, 527
BstYI	RGATCY	2 cut(s)	249, 527
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	73, 400
Cac8I	GCNNGC	2 cut(s)	484, 506
Csp6I	GTAC	2 cut(s)	212, 386
CviAII	CATG	2 cut(s)	179, 266
CviJI	RGCY	6 cut(s)	116, 128, 206, 272, 304, 416
CviKI_1	RGCY	6 cut(s)	116, 128, 206, 272, 304, 416
CviQI	GTAC	2 cut(s)	212, 386
DdeI	CTNAG	3 cut(s)	18, 188, 531
DpnI	GATC	3 cut(s)	251, 330, 529
DpnII	GATC	3 cut(s)	249, 328, 527
DraI	TTTAAA	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	182, 269
FatI	CATG	2 cut(s)	178, 265
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	60, 407
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	182, 269
HinfI	GANTC	3 cut(s)	231, 260, 494
HphI	GGTGA	3 cut(s)	269, 301, 503
Hpy188I	TCNGA	3 cut(s)	189, 238, 534
HpyAV	CCTTC	2 cut(s)	145, 484
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	2 cut(s)	438, 554
HpyCH4V	TGCA	2 cut(s)	47, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 122, 131
HpyF3I	CTNAG	3 cut(s)	18, 188, 531
HpySE526I	ACGT	2 cut(s)	438, 554
Hsp92II	CATG	2 cut(s)	182, 269
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	249, 328, 527
LmnI	GCTCC	2 cut(s)	269, 296
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	2 cut(s)	34, 133
MaeII	ACGT	2 cut(s)	438, 554
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	251, 330, 529
MboI	GATC	3 cut(s)	249, 328, 527
MboII	GAAGA	2 cut(s)	59, 401
MflI	RGATCY	2 cut(s)	249, 527
MluCI	AATT	3 cut(s)	6, 95, 197
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	4 cut(s)	81, 114, 524, 543
MseI	TTAA	4 cut(s)	87, 422, 546, 562
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	3 cut(s)	100, 122, 131
NdeII	GATC	3 cut(s)	249, 328, 527
NlaIII	CATG	2 cut(s)	182, 269
NlaIV	GGNNCC	2 cut(s)	251, 271
NspV	TTCGAA	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	231, 260, 494
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	2 cut(s)	251, 271
PsuI	RGATCY	2 cut(s)	249, 527
RsaI	GTAC	2 cut(s)	213, 387
RsaNI	GTAC	2 cut(s)	212, 386
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	4 cut(s)	87, 422, 546, 562
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	249, 328, 527
ScaI	AGTACT	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	541
SetI	ASST	5 cut(s)	24, 130, 441, 516, 557
SfaNI	GCATC	2 cut(s)	34, 133
SfcI	CTRYAG	2 cut(s)	207, 315
SfuI	TTCGAA	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	3 cut(s)	6, 95, 197
SsiI	CCGC	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	2 cut(s)	441, 557
TaqI	TCGA	1 cut(s)	497
TasI	AATT	3 cut(s)	6, 95, 197
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	3 cut(s)	231, 260, 494
Tru1I	TTAA	4 cut(s)	87, 422, 546, 562
Tru9I	TTAA	4 cut(s)	87, 422, 546, 562
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.