Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004860

Physical Location & Seq

Genomic Coordinates Reverse (-)

27874808 .. 27878161

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0286400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCCTCCCACGCAGCTCTAGCTTCTTCAAGAATCCCAGCCAACACCAGGCTAATTCCCTCCAAGACCTCCCACTCTTTTCCCGCTCAATGCTTCTCCAAGAGGCTGGAAGTTGCTGAATTCTCTGGCTTGAGATCCAGTTCATGTTTGACCTATGCAACCAATGGTAGAGAGGCATCATTCTTTGATGCTGTGGCTGCTCAACTCACTCCCAAGACTTCAGGATCAGCTCCTGTTAAGGGAGAAACGGTGGCCAAATTAAAGGTGGCTATCAACGGATTTGGACGTATTGGCAGGAACTTTCTCCGATGCTGGCATGGCCGGAAGGATTCACCCCTTGAGGTCATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCCCACTTGCTGAAATATGATTCTATGCTGGGTACTTTCAAAGCAGATATAAAAATAGTGGACAATGAAACTATCAGTGTTGATGGTAAGCCTGTCAAGGTTGTCTCTAACAGAGATCCCCTGAAGCTTCCATGGGCTGAGATGGGCATTGACATTGTTATTGAGGGAACAGGAGTTTTTGTTGATGGCCCTGGTGCTGGTAAACACATCCAAGCTGGTGCTAAGAAAGTTATCATTACAGCTCCAGCAAAAGGTGCCGATATTCCTACCTATGTTGTAGGAGTAAATGAAAAAGATTATGGCCATAGCGTTGCAGACATTGTGAGCAACGCTTCCTGCACCACAAATTGTCTGGCTCCTTTTGTGAAGGTCCTCGATGAAGAATTCGGTATTGTCAAGGGAACCATGACAACTACTCATTCCTACACTGGAGACCAGACTGTTGGATGCTTCACACAGGGACTTGAGGAGAGCAAGGGCAGCAGCACTGAACATAGTGCCCACAAGCACCGGTGCAGCCAAGGCAGTGTCTCTAGTGCTGCCTCAGCTCAAAGGCAAGCTCAATGGCATTGCCCTCCGTGTGCCAACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

324

Amino Acids

34.28

Weight (kDa)

8.79

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	88 - 189	3.4e-31	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C	PF02800	245 - 275	7.6e-09	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35081 FvH4_5g35082 FvH4_5g35230
rosa_chinensis	RchiOBHm_Chr0c11g0499531 RchiOBHm_Chr7g0236081 RchiOBHm_Chr7g0236361
rosa_multiflora	Rmu_sc0002449.1_g000017
rosa_roxburghii	Rroxscaffold_3G00225120 Rroxscaffold_3G00225130 Rroxscaffold_3G00225150 Rroxscaffold_3G00225160 Rroxscaffold_3G00225180 Rroxscaffold_3G00225200 Rroxscaffold_3G00225430 Rroxscaffold_3G00225440
rosa_rugosa	Rorug07G0117500 Rorug07G0286400 Rorug07G0293500 Rorug07G0293600 Rorug07G0296800
rosa_samantha	Rh1DG165500 Rh5DG246000 Rh7AG448400 Rh7AG448500 Rh7AG448900 Rh7AG449000 Rh7AG449100 Rh7AG449200
rosa_wichuraiana	Rw0G007960 Rw0G019900 Rw5G021720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	86
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	3 cut(s)	129, 232, 491
AcoI	YGGCCR	3 cut(s)	252, 319, 682
AcsI	RAATTY	2 cut(s)	119, 764
AcuI	CTGAAG	2 cut(s)	204, 524
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	4 cut(s)	48, 239, 578, 632
AgeI	ACCGGT	1 cut(s)	891
AgsI	TTSAA	2 cut(s)	30, 421
AjnI	CCWGG	2 cut(s)	47, 571
AluBI	AGCT	8 cut(s)	17, 23, 230, 508, 596, 623, 929, 941
AluI	AGCT	8 cut(s)	17, 23, 230, 508, 596, 623, 929, 941
Alw26I	GTCTC	3 cut(s)	490, 807, 916
AlwI	GGATC	3 cut(s)	129, 232, 491
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	5 cut(s)	3, 252, 319, 568, 682
ApeKI	GCWGC	6 cut(s)	14, 197, 861, 864, 897, 920
ApoI	RAATTY	2 cut(s)	119, 764
AsiGI	ACCGGT	1 cut(s)	891
AspS9I	GGNCC	2 cut(s)	569, 751
AsuHPI	GGTGA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	751
BaeGI	GKGCMC	1 cut(s)	883
BalI	TGGCCA	2 cut(s)	254, 684
BanI	GGYRCC	1 cut(s)	635
BbvCI	CCTCAGC	1 cut(s)	925
BbvI	GCAGC	6 cut(s)	26, 184, 873, 876, 907, 909
BccI	CCATC	3 cut(s)	458, 517, 560
BciT130I	CCWGG	2 cut(s)	49, 573
BcoDI	GTCTC	3 cut(s)	490, 807, 916
BfaI	CTAG	2 cut(s)	20, 915
BisI	GCNGC	6 cut(s)	15, 198, 862, 865, 898, 921
BlsI	GCNGC	6 cut(s)	16, 199, 863, 866, 899, 922
Bme1390I	CCNGG	2 cut(s)	49, 573
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	2 cut(s)	569, 751
BmiI	GGNNCC	3 cut(s)	637, 738, 784
BmrFI	CCNGG	2 cut(s)	49, 573
BmsI	GCATC	4 cut(s)	178, 185, 299, 818
BpmI	CTGGAG	2 cut(s)	609, 831
Bpu10I	CCTNAGC	1 cut(s)	925
BpuEI	CTTGAG	3 cut(s)	151, 359, 866
BsaI	GGTCTC	1 cut(s)	807
BsaJI	CCNNGG	3 cut(s)	512, 571, 901
BsaWI	WCCGGW	1 cut(s)	891
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 546, 576
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 239, 578, 632
Bse118I	RCCGGY	1 cut(s)	891
Bse1I	ACTGG	2 cut(s)	138, 814
Bse3DI	GCAATG	1 cut(s)	949
BseBI	CCWGG	2 cut(s)	49, 573
BseDI	CCNNGG	3 cut(s)	512, 571, 901
BseGI	GGATG	2 cut(s)	588, 833
BseLI	CCNNNNNNNGG	4 cut(s)	48, 239, 578, 632
BseMI	GCAATG	1 cut(s)	949
BseMII	CTCAG	2 cut(s)	510, 939
BseNI	ACTGG	2 cut(s)	138, 814
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	6 cut(s)	26, 184, 873, 876, 907, 909
BseYI	CCCAGC	2 cut(s)	37, 409
BsgI	GTGCAG	2 cut(s)	703, 916
BshFI	GGCC	5 cut(s)	5, 254, 321, 570, 684
BshNI	GGYRCC	1 cut(s)	635
BshTI	ACCGGT	1 cut(s)	891
BsiSI	CCGG	2 cut(s)	322, 892
BslFI	GGGAC	1 cut(s)	855
BslI	CCNNNNNNNGG	4 cut(s)	48, 239, 578, 632
BsmAI	GTCTC	3 cut(s)	490, 807, 916
BsmFI	GGGAC	1 cut(s)	855
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	5 cut(s)	5, 254, 321, 570, 684
Bso31I	GGTCTC	1 cut(s)	807
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	3 cut(s)	134, 224, 496
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	5 cut(s)	5, 254, 321, 570, 684
BspCNI	CTCAG	2 cut(s)	511, 938
BspLI	GGNNCC	3 cut(s)	637, 738, 784
BspPI	GGATC	3 cut(s)	129, 232, 491
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	807
BsrBI	CCGCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	949
BsrFI	RCCGGY	1 cut(s)	891
BsrI	ACTGG	2 cut(s)	138, 814
BssAI	RCCGGY	1 cut(s)	891
BssECI	CCNNGG	3 cut(s)	512, 571, 901
BssMI	GATC	3 cut(s)	134, 224, 496
BssT1I	CCWWGG	2 cut(s)	512, 901
Bst2UI	CCWGG	2 cut(s)	49, 573
Bst4CI	ACNGT	3 cut(s)	250, 362, 823
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	314, 939
BstDEI	CTNAG	3 cut(s)	519, 603, 925
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	2 cut(s)	588, 833
BstKTI	GATC	3 cut(s)	137, 227, 499
BstMAI	GTCTC	3 cut(s)	490, 807, 916
BstMBI	GATC	3 cut(s)	134, 224, 496
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 20, 197, 318, 635, 861, 903, 926
BstNI	CCWGG	2 cut(s)	49, 573
BstSCI	CCNGG	2 cut(s)	47, 571
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	6 cut(s)	26, 184, 873, 876, 907, 909
BstX2I	RGATCY	2 cut(s)	134, 496
BstXI	CCANNNNNNTGG	2 cut(s)	106, 824
BstYI	RGATCY	2 cut(s)	134, 496
BsuRI	GGCC	5 cut(s)	5, 254, 321, 570, 684
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	588, 833
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	5 cut(s)	367, 463, 807, 867, 913
Cac8I	GCNNGC	2 cut(s)	314, 939
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	891
Cfr13I	GGNCC	2 cut(s)	569, 751
Csp6I	GTAC	1 cut(s)	414
CspAI	ACCGGT	1 cut(s)	891
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	4 cut(s)	144, 317, 513, 787
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	519, 603, 925
DpnI	GATC	3 cut(s)	136, 226, 498
DpnII	GATC	3 cut(s)	134, 224, 496
EaeI	YGGCCR	3 cut(s)	252, 319, 682
Eco130I	CCWWGG	2 cut(s)	512, 901
Eco31I	GGTCTC	1 cut(s)	807
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	2 cut(s)	204, 524
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRI	GAATTC	2 cut(s)	119, 764
EcoRII	CCWGG	2 cut(s)	47, 571
EcoT14I	CCWWGG	2 cut(s)	512, 901
ErhI	CCWWGG	2 cut(s)	512, 901
FaeI	CATG	4 cut(s)	147, 320, 516, 790
FaqI	GGGAC	1 cut(s)	855
FatI	CATG	4 cut(s)	143, 316, 512, 786
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	6 cut(s)	15, 198, 862, 865, 898, 921
FokI	GGATG	2 cut(s)	575, 840
Fsp4HI	GCNGC	6 cut(s)	15, 198, 862, 865, 898, 921
FspBI	CTAG	2 cut(s)	20, 915
GluI	GCNGC	6 cut(s)	15, 198, 862, 865, 898, 921
GsaI	CCCAGC	2 cut(s)	41, 413
GsuI	CTGGAG	2 cut(s)	609, 831
HaeIII	GGCC	5 cut(s)	5, 254, 321, 570, 684
HapII	CCGG	2 cut(s)	322, 892
Hin1II	CATG	4 cut(s)	147, 320, 516, 790
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	33, 329, 401
HpaII	CCGG	2 cut(s)	322, 892
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	2 cut(s)	442, 584
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	30, 222, 373
Hpy8I	GTNNAC	2 cut(s)	442, 584
HpyAV	CCTTC	2 cut(s)	319, 742
HpyCH4III	ACNGT	3 cut(s)	250, 362, 823
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	158, 695, 720, 897
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 20, 197, 318, 635, 861, 903, 926
HpyF3I	CTNAG	3 cut(s)	519, 603, 925
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	4 cut(s)	147, 320, 516, 790
Kzo9I	GATC	3 cut(s)	134, 224, 496
LmnI	GCTCC	3 cut(s)	235, 628, 742
Lsp1109I	GCAGC	6 cut(s)	26, 184, 873, 876, 907, 909
LweI	GCATC	4 cut(s)	178, 185, 299, 818
MaeI	CTAG	2 cut(s)	20, 915
MaeII	ACGT	1 cut(s)	286
MalI	GATC	3 cut(s)	136, 226, 498
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	3 cut(s)	134, 224, 496
MboII	GAAGA	2 cut(s)	18, 773
MflI	RGATCY	2 cut(s)	134, 496
MhlI	GDGCHC	1 cut(s)	883
MlsI	TGGCCA	2 cut(s)	254, 684
MluCI	AATT	5 cut(s)	54, 119, 257, 727, 764
MluNI	TGGCCA	2 cut(s)	254, 684
MmeI	TCCRAC	1 cut(s)	805
Mox20I	TGGCCA	2 cut(s)	254, 684
MscI	TGGCCA	2 cut(s)	254, 684
MseI	TTAA	2 cut(s)	237, 260
Msp20I	TGGCCA	2 cut(s)	254, 684
MspI	CCGG	2 cut(s)	322, 892
MspR9I	CCNGG	2 cut(s)	49, 573
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	49, 573
MwoI	GCNNNNNNNGC	8 cut(s)	11, 20, 197, 318, 635, 861, 903, 926
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	3 cut(s)	134, 224, 496
NlaIII	CATG	4 cut(s)	147, 320, 516, 790
NlaIV	GGNNCC	3 cut(s)	637, 738, 784
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	33, 329, 401
PinAI	ACCGGT	1 cut(s)	891
PkrI	GCNGC	6 cut(s)	16, 199, 863, 866, 899, 922
PpuMI	RGGWCCY	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	2 cut(s)	47, 571
PspFI	CCCAGC	2 cut(s)	37, 409
PspGI	CCWGG	2 cut(s)	47, 571
PspN4I	GGNNCC	3 cut(s)	637, 738, 784
PspPI	GGNCC	2 cut(s)	569, 751
PspPPI	RGGWCCY	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	134, 496
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	237, 260
SatI	GCNGC	6 cut(s)	15, 198, 862, 865, 898, 921
Sau3AI	GATC	3 cut(s)	134, 224, 496
Sau96I	GGNCC	2 cut(s)	569, 751
ScrFI	CCNGG	2 cut(s)	49, 573
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	4 cut(s)	178, 185, 299, 818
SgrAI	CRCCGGYG	1 cut(s)	891
SinI	GGWCC	1 cut(s)	751
SmlI	CTYRAG	3 cut(s)	130, 338, 845
SmoI	CTYRAG	3 cut(s)	130, 338, 845
Sse9I	AATT	5 cut(s)	54, 119, 257, 727, 764
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	20, 915
StyD4I	CCNGG	2 cut(s)	47, 571
StyI	CCWWGG	2 cut(s)	512, 901
TaaI	ACNGT	3 cut(s)	250, 362, 823
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	756
TasI	AATT	5 cut(s)	54, 119, 257, 727, 764
TfiI	GAWTC	3 cut(s)	33, 329, 401
Tru1I	TTAA	2 cut(s)	237, 260
Tru9I	TTAA	2 cut(s)	237, 260
TscAI	CASTG	5 cut(s)	367, 463, 814, 874, 913
TseI	GCWGC	6 cut(s)	14, 197, 861, 864, 897, 920
TspDTI	ATGAA	4 cut(s)	132, 462, 684, 774
TspGWI	ACGGA	2 cut(s)	291, 948
TspRI	CASTG	5 cut(s)	367, 463, 814, 874, 913
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	2 cut(s)	119, 764
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 730
XspI	CTAG	2 cut(s)	20, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.