Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00894

Orthogroup ID

OG0004860

Physical Location & Seq

Genomic Coordinates Forward (+)

16004 .. 19431

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGCGATTCTGTTTCAGGGTTGATTCTCCTCTCCGAGGTTGCAGATCTTGCTGCGTCTGATTCCAACACAAGGGCTTCTTCTTCTTCTTTGAAATCTTGCGATGTTGCGATTCAGATGTTGATGGAGTTCAAGACTATGAAGAAGAAAGGCTTGCTGGCCGCTCATCTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGGTCCAATCTTTCTATTTCTATTTCTAAGAGGAGGACTGACTTGTTGGCTTTCTGTATACCCAAAAAGAAAAGATCTAATCTTGTTTCTCATATTGTGATGAAAAGGAAGAGATCTGGGGAGCAAGATGGTCAGATTCCAAGACTAAAGAGGCGGAGAACTATTACTGGAGATGACTTGGGTTCTCCATTGGCCATGCCCTCTCGTTCTCATCAAGAAATGAAAAACATGATTAGCAGCCACGTCCCACTCTGGTCATTCCAAAGGAAATCCCCGCTTCGATTTTCCCTCATCAAGCTTCATCTATCTGCCGCCAGGACAACTGCGCCCTCCAGTGATGCTAATGGTCTAATTAATGGAGAATGTATAGATCCTGTTAAGGTAATTTCTTGTGATGATAGTGATGATACATATGTAGCTGCTGCTTATGCTAGTGATGATATAATGAAGGAATTAATGGTGAATGCTGTCAATAGAGCTGCTGATGGTGTTAAGCAGCTTGTTTTTCTTAATTATTACATAGTGGAGGGACACACTTGCCCCTGTCTTTTCATGATGGAAATCATCATCATGGCCAGCGCTGCAGCCCAATCCAACCGGAGATATGATACATATACACTGGATCAGAATCGCATCAACTTGGAAGGGGATGGTATTAGTGAGGTGCAAGGCTGTATTGGTATGGAACCCCCCTCCCAGGACACTGGATCAGAATCGCATCAACTTGGAAGGGGATGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

34.71

Weight (kDa)

9.09

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35081 FvH4_5g35082 FvH4_5g35230
rosa_chinensis	RchiOBHm_Chr0c11g0499531 RchiOBHm_Chr7g0236081 RchiOBHm_Chr7g0236361
rosa_multiflora	Rmu_sc0002449.1_g000017
rosa_roxburghii	Rroxscaffold_3G00225120 Rroxscaffold_3G00225130 Rroxscaffold_3G00225150 Rroxscaffold_3G00225160 Rroxscaffold_3G00225180 Rroxscaffold_3G00225200 Rroxscaffold_3G00225430 Rroxscaffold_3G00225440
rosa_rugosa	Rorug07G0117500 Rorug07G0286400 Rorug07G0293500 Rorug07G0293600 Rorug07G0296800
rosa_samantha	Rh1DG165500 Rh5DG246000 Rh7AG448400 Rh7AG448500 Rh7AG448900 Rh7AG449000 Rh7AG449100 Rh7AG449200
rosa_wichuraiana	Rw0G007960 Rw0G019900 Rw5G021720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	4 cut(s)	162, 355, 476, 513
AclWI	GGATC	3 cut(s)	566, 831, 916
AcoI	YGGCCR	3 cut(s)	159, 393, 774
AfeI	AGCGCT	1 cut(s)	781
AfiI	CCNNNNNNNGG	3 cut(s)	37, 72, 898
AgsI	TTSAA	2 cut(s)	94, 133
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	515, 897
AluBI	AGCT	4 cut(s)	499, 620, 680, 700
AluI	AGCT	4 cut(s)	499, 620, 680, 700
AlwI	GGATC	3 cut(s)	566, 831, 916
Aor51HI	AGCGCT	1 cut(s)	781
AoxI	GGCC	4 cut(s)	159, 177, 393, 774
ApeKI	GCWGC	8 cut(s)	53, 438, 620, 623, 680, 697, 782, 785
AseI	ATTAAT	2 cut(s)	555, 656
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	529, 782
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BalI	TGGCCA	2 cut(s)	395, 776
BbvI	GCAGC	8 cut(s)	40, 450, 607, 610, 667, 709, 769, 797
BccI	CCATC	6 cut(s)	118, 323, 680, 751, 845, 930
BciT130I	CCWGG	2 cut(s)	517, 899
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	783
BglII	AGATCT	3 cut(s)	46, 275, 314
Bme1390I	CCNGG	2 cut(s)	517, 899
Bme18I	GGWCC	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	888
BmrFI	CCNGG	2 cut(s)	517, 899
BmsI	GCATC	3 cut(s)	529, 843, 928
BpmI	CTGGAG	3 cut(s)	191, 390, 517
BsaBI	GATNNNNATC	3 cut(s)	761, 828, 913
BsaJI	CCNNGG	2 cut(s)	36, 897
BsaWI	WCCGGW	1 cut(s)	798
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 72, 898
Bse1I	ACTGG	4 cut(s)	373, 534, 825, 910
Bse8I	GATNNNNATC	3 cut(s)	761, 828, 913
BseBI	CCWGG	2 cut(s)	517, 899
BseDI	CCNNGG	2 cut(s)	36, 897
BseGI	GGATG	2 cut(s)	856, 941
BseJI	GATNNNNATC	3 cut(s)	761, 828, 913
BseLI	CCNNNNNNNGG	3 cut(s)	37, 72, 898
BseNI	ACTGG	4 cut(s)	373, 534, 825, 910
BseRI	GAGGAG	2 cut(s)	20, 247
BseXI	GCAGC	8 cut(s)	40, 450, 607, 610, 667, 709, 769, 797
BshFI	GGCC	4 cut(s)	161, 179, 395, 776
BsiSI	CCGG	1 cut(s)	799
BslFI	GGGAC	2 cut(s)	431, 744
BslI	CCNNNNNNNGG	3 cut(s)	37, 72, 898
BsmFI	GGGAC	2 cut(s)	431, 744
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	4 cut(s)	161, 179, 395, 776
Bsp143I	GATC	6 cut(s)	46, 275, 314, 571, 823, 908
BspACI	CCGC	4 cut(s)	162, 355, 476, 513
BspANI	GGCC	4 cut(s)	161, 179, 395, 776
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	1 cut(s)	888
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	3 cut(s)	566, 831, 916
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	4 cut(s)	373, 534, 825, 910
BssECI	CCNNGG	2 cut(s)	36, 897
BssMI	GATC	6 cut(s)	46, 275, 314, 571, 823, 908
BssNAI	GTATAC	1 cut(s)	260
Bst1107I	GTATAC	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	517, 899
Bst6I	CTCTTC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	155, 159, 778
BstDEI	CTNAG	1 cut(s)	228
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	856, 941
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	2 cut(s)	529, 782
BstKTI	GATC	6 cut(s)	49, 278, 317, 574, 826, 911
BstMBI	GATC	6 cut(s)	46, 275, 314, 571, 823, 908
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 629, 782
BstNI	CCWGG	2 cut(s)	517, 899
BstSCI	CCNGG	2 cut(s)	515, 897
BstSFI	CTRYAG	1 cut(s)	783
BstV1I	GCAGC	8 cut(s)	40, 450, 607, 610, 667, 709, 769, 797
BstX2I	RGATCY	4 cut(s)	46, 275, 314, 571
BstXI	CCANNNNNNTGG	1 cut(s)	905
BstYI	RGATCY	4 cut(s)	46, 275, 314, 571
BstZ17I	GTATAC	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	161, 179, 395, 776
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	856, 941
BtsIMutI	CAGTG	3 cut(s)	541, 818, 903
Cac8I	GCNNGC	3 cut(s)	155, 159, 778
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	2 cut(s)	529, 782
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	1 cut(s)	45
CviAII	CATG	4 cut(s)	397, 430, 754, 772
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	6 cut(s)	48, 277, 316, 573, 825, 910
DpnII	GATC	6 cut(s)	46, 275, 314, 571, 823, 908
EaeI	YGGCCR	3 cut(s)	159, 393, 774
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	204
Eco47III	AGCGCT	1 cut(s)	781
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	515, 897
FaeI	CATG	4 cut(s)	400, 433, 757, 775
FalI	AAGNNNNNCTT	6 cut(s)	64, 96, 137, 169, 167, 199
FaqI	GGGAC	2 cut(s)	431, 744
FatI	CATG	4 cut(s)	396, 429, 753, 771
FauI	CCCGC	1 cut(s)	483
FauNDI	CATATG	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	259
FokI	GGATG	1 cut(s)	863
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	2 cut(s)	528, 781
GsuI	CTGGAG	3 cut(s)	191, 390, 517
HaeII	RGCGCY	1 cut(s)	783
HaeIII	GGCC	4 cut(s)	161, 179, 395, 776
HapII	CCGG	1 cut(s)	799
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	2 cut(s)	529, 782
Hin1II	CATG	4 cut(s)	400, 433, 757, 775
Hin6I	GCGC	2 cut(s)	527, 780
HinP1I	GCGC	2 cut(s)	527, 780
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	7 cut(s)	8, 25, 62, 112, 337, 829, 914
HpaII	CCGG	1 cut(s)	799
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	6 cut(s)	37, 61, 117, 336, 828, 913
Hpy188III	TCNNGA	4 cut(s)	133, 170, 416, 754
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	5 cut(s)	169, 190, 643, 839, 924
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	3 cut(s)	44, 785, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 629, 782
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	400, 433, 757, 775
HspAI	GCGC	2 cut(s)	527, 780
Kzo9I	GATC	6 cut(s)	46, 275, 314, 571, 823, 908
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	8 cut(s)	40, 450, 607, 610, 667, 709, 769, 797
LweI	GCATC	3 cut(s)	529, 843, 928
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	444
MalI	GATC	6 cut(s)	48, 277, 316, 573, 825, 910
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	6 cut(s)	46, 275, 314, 571, 823, 908
MboII	GAAGA	8 cut(s)	72, 75, 78, 154, 157, 175, 208, 322
MflI	RGATCY	4 cut(s)	46, 275, 314, 571
MlsI	TGGCCA	2 cut(s)	395, 776
MluCI	AATT	4 cut(s)	552, 585, 653, 712
MluNI	TGGCCA	2 cut(s)	395, 776
MmeI	TCCRAC	2 cut(s)	90, 819
Mox20I	TGGCCA	2 cut(s)	395, 776
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	2 cut(s)	395, 776
MseI	TTAA	5 cut(s)	555, 579, 656, 693, 711
MslI	CAYNNNNRTG	1 cut(s)	770
Msp20I	TGGCCA	2 cut(s)	395, 776
MspI	CCGG	1 cut(s)	799
MspR9I	CCNGG	2 cut(s)	517, 899
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	2 cut(s)	517, 899
MwoI	GCNNNNNNNGC	3 cut(s)	50, 629, 782
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	6 cut(s)	46, 275, 314, 571, 823, 908
NlaIII	CATG	4 cut(s)	400, 433, 757, 775
NlaIV	GGNNCC	1 cut(s)	888
PagI	TCATGA	1 cut(s)	753
PceI	AGGCCT	1 cut(s)	179
PctI	GAATGC	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	7 cut(s)	8, 25, 62, 112, 337, 829, 914
PshBI	ATTAAT	2 cut(s)	555, 656
Psp6I	CCWGG	2 cut(s)	515, 897
PspGI	CCWGG	2 cut(s)	515, 897
PspN4I	GGNNCC	1 cut(s)	888
PspPI	GGNCC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	787
PsuI	RGATCY	4 cut(s)	46, 275, 314, 571
RseI	CAYNNNNRTG	1 cut(s)	770
SaqAI	TTAA	5 cut(s)	555, 579, 656, 693, 711
Sau3AI	GATC	6 cut(s)	46, 275, 314, 571, 823, 908
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	2 cut(s)	517, 899
SetI	ASST	9 cut(s)	42, 206, 447, 501, 585, 622, 682, 702, 867
SfaNI	GCATC	3 cut(s)	529, 843, 928
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	770
Sse9I	AATT	4 cut(s)	552, 585, 653, 712
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	4 cut(s)	162, 355, 476, 513
SspMI	CTAG	1 cut(s)	633
StuI	AGGCCT	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	515, 897
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	481
TasI	AATT	4 cut(s)	552, 585, 653, 712
TauI	GCSGC	2 cut(s)	164, 515
TfiI	GAWTC	7 cut(s)	8, 25, 62, 112, 337, 829, 914
Tru1I	TTAA	5 cut(s)	555, 579, 656, 693, 711
Tru9I	TTAA	5 cut(s)	555, 579, 656, 693, 711
TscAI	CASTG	3 cut(s)	541, 825, 910
TseI	GCWGC	8 cut(s)	53, 438, 620, 623, 680, 697, 782, 785
TspDTI	ATGAA	7 cut(s)	155, 175, 317, 437, 491, 662, 742
TspRI	CASTG	3 cut(s)	541, 825, 910
VpaK11BI	GGWCC	1 cut(s)	204
VspI	ATTAAT	2 cut(s)	555, 656
XagI	CCTNNNNNAGG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.