Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004860

Physical Location & Seq

Genomic Coordinates Reverse (-)

25652042 .. 25652810

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35082.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACCTGTCCGCGTTGAATCTGCTTGCTGATGTCGCTGAGGGCTTTGATTCGAACACATCGGCTTCTTCGAAATCGAAATCGTTGCTCGCAATTCAGATCCTGACGGAGATGAGGGTTCTAAACAAGAAAGGGTTGCTTCTGTCTGATCTTGGAAAGGGATTACGGGTGCCAAAGAGGAAAAGATCCAAGCTTTCCGATAGGAGGAGGACAGACTTGTTGGCCTTCTGTGTACCCAAGAGGAAGCGATCTGGGGACCCTGATGATCAAATTCAAACACCCAAGAGGCAAAAGACTACTCCTGCACATGATTTCGGTTCATCACTTCAATTGGGCATGTCTTGTTCTTCTCAAGATATCAAAAGCAAGATTGATATCCCGCTCTGGCTTCCAGCAAAGAAGAGTAGCACTGCACTTGTTATTGGTTCTCAAAGCTGGGGTACATTCTTGAGACAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.84

Weight (kDa)

10.21

Isoelectric Point (pI)

65.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35081 FvH4_5g35082 FvH4_5g35230
rosa_chinensis	RchiOBHm_Chr0c11g0499531 RchiOBHm_Chr7g0236081 RchiOBHm_Chr7g0236361
rosa_multiflora	Rmu_sc0002449.1_g000017
rosa_roxburghii	Rroxscaffold_3G00225120 Rroxscaffold_3G00225130 Rroxscaffold_3G00225150 Rroxscaffold_3G00225160 Rroxscaffold_3G00225180 Rroxscaffold_3G00225200 Rroxscaffold_3G00225430 Rroxscaffold_3G00225440
rosa_rugosa	Rorug07G0117500 Rorug07G0286400 Rorug07G0293500 Rorug07G0293600 Rorug07G0296800
rosa_samantha	Rh1DG165500 Rh5DG246000 Rh7AG448400 Rh7AG448500 Rh7AG448900 Rh7AG449000 Rh7AG449100 Rh7AG449200
rosa_wichuraiana	Rw0G007960 Rw0G019900 Rw5G021720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccBSI	CCGCTC	1 cut(s)	382
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	12, 380
AclWI	GGATC	2 cut(s)	94, 180
AcsI	RAATTY	1 cut(s)	270
AfaI	GTAC	2 cut(s)	234, 442
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	19, 275, 329
AluBI	AGCT	2 cut(s)	193, 435
AluI	AGCT	2 cut(s)	193, 435
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	2 cut(s)	94, 180
AlwNI	CAGNNNCTG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	4, 256
AsuII	TTCGAA	2 cut(s)	53, 71
AvaII	GGWCC	2 cut(s)	4, 256
BanI	GGYRCC	1 cut(s)	169
BbvCI	CCTCAGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	445
Bme18I	GGWCC	2 cut(s)	4, 256
BmgT120I	GGNCC	2 cut(s)	4, 256
BmiI	GGNNCC	3 cut(s)	171, 257, 258
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	2 cut(s)	53, 71
BpuEI	CTTGAG	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	374
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	435
BsgI	GTGCAG	2 cut(s)	288, 396
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	224
Bsp119I	TTCGAA	2 cut(s)	53, 71
Bsp143I	GATC	5 cut(s)	99, 148, 185, 248, 265
BspACI	CCGC	2 cut(s)	12, 380
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	171, 257, 258
BspPI	GGATC	2 cut(s)	94, 180
BspT104I	TTCGAA	2 cut(s)	53, 71
BspT107I	GGYRCC	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	382
BssMI	GATC	5 cut(s)	99, 148, 185, 248, 265
Bst6I	CTCTTC	1 cut(s)	395
BstBI	TTCGAA	2 cut(s)	53, 71
BstC8I	GCNNGC	2 cut(s)	27, 90
BstDEI	CTNAG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	5 cut(s)	102, 151, 188, 251, 268
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	5 cut(s)	99, 148, 185, 248, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	340
BstUI	CGCG	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	99, 185
BstYI	RGATCY	2 cut(s)	99, 185
BsuRI	GGCC	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	27, 90
CaiI	CAGNNNCTG	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	4, 256
Csp6I	GTAC	2 cut(s)	233, 441
CviAII	CATG	2 cut(s)	308, 337
CviJI	RGCY	6 cut(s)	45, 65, 193, 224, 388, 435
CviKI_1	RGCY	6 cut(s)	45, 65, 193, 224, 388, 435
CviQI	GTAC	2 cut(s)	233, 441
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	5 cut(s)	101, 150, 187, 250, 267
DpnII	GATC	5 cut(s)	99, 148, 185, 248, 265
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco32I	GATATC	2 cut(s)	358, 376
Eco47I	GGWCC	2 cut(s)	4, 256
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRV	GATATC	2 cut(s)	358, 376
FaeI	CATG	2 cut(s)	311, 340
FaiI	YATR	3 cut(s)	309, 338, 460
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	2 cut(s)	307, 336
FauI	CCCGC	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	265
GsaI	CCCAGC	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	311, 340
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	19, 50
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	3 cut(s)	99, 148, 199
Hpy188III	TCNNGA	3 cut(s)	103, 353, 448
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	305, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	311, 340
KflI	GGGWCCC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	99, 148, 185, 248, 265
LpnPI	CCDG	8 cut(s)	20, 116, 237, 273, 315, 370, 405, 421
MalI	GATC	5 cut(s)	101, 150, 187, 250, 267
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	5 cut(s)	99, 148, 185, 248, 265
MboII	GAAGA	3 cut(s)	60, 339, 412
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	2 cut(s)	99, 185
MluCI	AATT	3 cut(s)	93, 270, 329
MnlI	CCTC	7 cut(s)	34, 108, 171, 198, 201, 234, 279
MunI	CAATTG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	5 cut(s)	99, 148, 185, 248, 265
NlaIII	CATG	2 cut(s)	311, 340
NlaIV	GGNNCC	3 cut(s)	171, 257, 258
NspI	RCATGY	1 cut(s)	340
NspV	TTCGAA	2 cut(s)	53, 71
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	19, 50
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	435
PspN4I	GGNNCC	3 cut(s)	171, 257, 258
PspPI	GGNCC	2 cut(s)	4, 256
PspPPI	RGGWCCY	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	99, 185
RsaI	GTAC	2 cut(s)	234, 442
RsaNI	GTAC	2 cut(s)	233, 441
Sau3AI	GATC	5 cut(s)	99, 148, 185, 248, 265
Sau96I	GGNCC	2 cut(s)	4, 256
SetI	ASST	3 cut(s)	9, 195, 437
SfuI	TTCGAA	2 cut(s)	53, 71
SinI	GGWCC	2 cut(s)	4, 256
SmlI	CTYRAG	2 cut(s)	351, 448
SmoI	CTYRAG	2 cut(s)	351, 448
Sse9I	AATT	3 cut(s)	93, 270, 329
SsiI	CCGC	2 cut(s)	12, 380
TaqI	TCGA	3 cut(s)	53, 71, 77
TasI	AATT	3 cut(s)	93, 270, 329
TfiI	GAWTC	2 cut(s)	19, 50
TscAI	CASTG	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	4, 256
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.