Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004860

Physical Location & Seq

Genomic Coordinates Reverse (-)

61258875 .. 61261337

Gene Structure 2463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG448400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGCGATTCTGGTTTTGATGTTTCAGGGTTAAATCTCCTCTCAGAGGTTGCAGATCTTGCTGGCTTTGATTCCAACACAAGGGCTTCCTCTTCTTCTTTGAAATCTTGCGATGTTGTGATTCAGATGTTGACGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTGGCCGCTCATCTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGGTCCAATTTTTCTATTTCTCTTTCTTTTTCTAAGAGGAGGACTGACTTGTTGGCTTTCTGTATACCCAAAAAGAAAAGATTTAATCTTGTTTCTCATATGATGATGAAAAGGAAGAGATCTGGGGAGCAAGATGGTCAGATTCCAAGACTAAAGAGGCGGAGAACTATTACTGGAGATGTCTTGGGTTCTCCACTGGCCATGCCCTCTCGTTCTCAAGAAATGAAAAACATGATTAGCAGCCACGTCCCACTCATGTCATTCCAAAAGAAATCCCCCTTCGATTTTCCCTCATCAACCTTCATCTATCTGCCGCCAGGACAACTGTGGTTAGTTAGTGAGCACATTCTGAGAGTTCATCCTACTTCAATTCAACCTACCATCTCCTTTATGCGAAAAAAAAAGAAGAAGCCTCTTTCATCTGCAGCGAATATTGCTATTGGATGCAGATTTCATGTGCTTCAATCTTGTAAGGATTCTGAGGTAGTCGGATCATGGAATGTTCTGCTTAAAAGGAACCATAAGAGTTCTCTTCCTGATCCAGTTGGATCTAAAGGCAACTTCGTTACTTCAGCTACTGTTGCTCCTGTGTCTAATGCTCAAGACCACTGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

30.78

Weight (kDa)

10.34

Isoelectric Point (pI)

64.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35081 FvH4_5g35082 FvH4_5g35230
rosa_chinensis	RchiOBHm_Chr0c11g0499531 RchiOBHm_Chr7g0236081 RchiOBHm_Chr7g0236361
rosa_multiflora	Rmu_sc0002449.1_g000017
rosa_roxburghii	Rroxscaffold_3G00225120 Rroxscaffold_3G00225130 Rroxscaffold_3G00225150 Rroxscaffold_3G00225160 Rroxscaffold_3G00225180 Rroxscaffold_3G00225200 Rroxscaffold_3G00225430 Rroxscaffold_3G00225440
rosa_rugosa	Rorug07G0117500 Rorug07G0286400 Rorug07G0293500 Rorug07G0293600 Rorug07G0296800
rosa_samantha	Rh1DG165500 Rh5DG246000 Rh7AG448400 Rh7AG448500 Rh7AG448900 Rh7AG449000 Rh7AG449100 Rh7AG449200
rosa_wichuraiana	Rw0G007960 Rw0G019900 Rw5G021720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	3 cut(s)	171, 370, 524
AclWI	GGATC	3 cut(s)	709, 743, 766
AcoI	YGGCCR	2 cut(s)	168, 408
AcuI	CTGAAG	1 cut(s)	765
AfiI	CCNNNNNNNGG	2 cut(s)	46, 81
AgsI	TTSAA	5 cut(s)	103, 142, 579, 584, 674
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	1 cut(s)	785
AluI	AGCT	1 cut(s)	785
Alw21I	GWGCWC	1 cut(s)	555
AlwI	GGATC	3 cut(s)	709, 743, 766
AlwNI	CAGNNNCTG	1 cut(s)	788
AoxI	GGCC	3 cut(s)	168, 186, 408
ApeKI	GCWGC	2 cut(s)	450, 635
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	462, 647
BccI	CCATC	2 cut(s)	338, 599
BciT130I	CCWGG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	633
BglII	AGATCT	2 cut(s)	55, 329
BisI	GCNGC	4 cut(s)	171, 451, 524, 636
BlsI	GCNGC	4 cut(s)	172, 452, 525, 637
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	728
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	644
BpmI	CTGGAG	2 cut(s)	200, 405
BpuEI	CTTGAG	2 cut(s)	411, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	778, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 81
Bse1I	ACTGG	4 cut(s)	388, 411, 752, 824
BseBI	CCWGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	568, 659
BseLI	CCNNNNNNNGG	2 cut(s)	46, 81
BseMII	CTCAG	3 cut(s)	57, 551, 681
BseNI	ACTGG	4 cut(s)	388, 411, 752, 824
BseRI	GAGGAG	2 cut(s)	29, 262
BseXI	GCAGC	2 cut(s)	462, 647
BshFI	GGCC	3 cut(s)	170, 188, 410
BsiHKAI	GWGCWC	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	46, 81
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	170, 188, 410
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	5 cut(s)	55, 329, 701, 748, 758
BspACI	CCGC	3 cut(s)	171, 370, 524
BspANI	GGCC	3 cut(s)	170, 188, 410
BspCNI	CTCAG	3 cut(s)	56, 552, 682
BspLI	GGNNCC	1 cut(s)	728
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	3 cut(s)	709, 743, 766
BsrBI	CCGCTC	1 cut(s)	173
BsrI	ACTGG	4 cut(s)	388, 411, 752, 824
BssMI	GATC	5 cut(s)	55, 329, 701, 748, 758
BssNAI	GTATAC	1 cut(s)	275
Bst1107I	GTATAC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	537, 790
Bst6I	CTCTTC	3 cut(s)	97, 320, 747
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	64, 164, 168
BstDEI	CTNAG	4 cut(s)	43, 243, 560, 690
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	568, 659
BstKTI	GATC	5 cut(s)	58, 332, 704, 751, 761
BstMBI	GATC	5 cut(s)	55, 329, 701, 748, 758
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 644, 791
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	2 cut(s)	462, 647
BstX2I	RGATCY	3 cut(s)	55, 329, 758
BstYI	RGATCY	3 cut(s)	55, 329, 758
BstZ17I	GTATAC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	170, 188, 410
BtgZI	GCGATG	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	2 cut(s)	568, 659
BtsIMutI	CAGTG	2 cut(s)	404, 817
Cac8I	GCNNGC	3 cut(s)	64, 164, 168
CaiI	CAGNNNCTG	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	213
CviAII	CATG	5 cut(s)	412, 442, 466, 665, 705
DdeI	CTNAG	4 cut(s)	43, 243, 560, 690
DpnI	GATC	5 cut(s)	57, 331, 703, 750, 760
DpnII	GATC	5 cut(s)	55, 329, 701, 748, 758
EaeI	YGGCCR	2 cut(s)	168, 408
Eam1104I	CTCTTC	3 cut(s)	97, 320, 747
EarI	CTCTTC	3 cut(s)	97, 320, 747
EciI	GGCGGA	1 cut(s)	385
Eco147I	AGGCCT	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	526
FaeI	CATG	5 cut(s)	415, 445, 469, 668, 708
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 176, 208
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	5 cut(s)	411, 441, 465, 664, 704
FauNDI	CATATG	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	171, 451, 524, 636
FokI	GGATG	2 cut(s)	555, 666
Fsp4HI	GCNGC	4 cut(s)	171, 451, 524, 636
GluI	GCNGC	4 cut(s)	171, 451, 524, 636
GsuI	CTGGAG	2 cut(s)	200, 405
HaeIII	GGCC	3 cut(s)	170, 188, 410
Hin1II	CATG	5 cut(s)	415, 445, 469, 668, 708
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	5 cut(s)	8, 71, 121, 352, 686
Hpy166II	GTNNAC	2 cut(s)	132, 275
Hpy188I	TCNGA	6 cut(s)	46, 126, 351, 561, 691, 701
Hpy188III	TCNNGA	5 cut(s)	142, 179, 428, 746, 812
Hpy8I	GTNNAC	2 cut(s)	132, 275
HpyAV	CCTTC	4 cut(s)	178, 199, 499, 520
HpyCH4III	ACNGT	2 cut(s)	537, 790
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	3 cut(s)	53, 635, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 644, 791
HpyF3I	CTNAG	4 cut(s)	43, 243, 560, 690
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	5 cut(s)	415, 445, 469, 668, 708
Kzo9I	GATC	5 cut(s)	55, 329, 701, 748, 758
LmnI	GCTCC	2 cut(s)	337, 799
Lsp1109I	GCAGC	2 cut(s)	462, 647
LweI	GCATC	1 cut(s)	644
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	775
MalI	GATC	5 cut(s)	57, 331, 703, 750, 760
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	5 cut(s)	55, 329, 701, 748, 758
MboII	GAAGA	9 cut(s)	84, 87, 163, 166, 184, 217, 337, 628, 734
MflI	RGATCY	3 cut(s)	55, 329, 758
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	2 cut(s)	217, 579
MluNI	TGGCCA	1 cut(s)	410
MmeI	TCCRAC	3 cut(s)	99, 679, 736
Mox20I	TGGCCA	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	3 cut(s)	32, 294, 720
Msp20I	TGGCCA	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	3 cut(s)	59, 644, 791
NdeI	CATATG	1 cut(s)	309
NdeII	GATC	5 cut(s)	55, 329, 701, 748, 758
NlaIII	CATG	5 cut(s)	415, 445, 469, 668, 708
NlaIV	GGNNCC	1 cut(s)	728
PceI	AGGCCT	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	5 cut(s)	8, 71, 121, 352, 686
PkrI	GCNGC	4 cut(s)	172, 452, 525, 637
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	728
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	3 cut(s)	55, 329, 758
SaqAI	TTAA	3 cut(s)	32, 294, 720
SatI	GCNGC	4 cut(s)	171, 451, 524, 636
Sau3AI	GATC	5 cut(s)	55, 329, 701, 748, 758
Sau96I	GGNCC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	7 cut(s)	51, 215, 459, 512, 589, 696, 787
SfaNI	GCATC	1 cut(s)	644
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	426, 810
SmoI	CTYRAG	2 cut(s)	426, 810
Sse9I	AATT	2 cut(s)	217, 579
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	3 cut(s)	171, 370, 524
SspI	AATATT	1 cut(s)	643
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	2 cut(s)	537, 790
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	1 cut(s)	492
TasI	AATT	2 cut(s)	217, 579
TauI	GCSGC	2 cut(s)	173, 526
TfiI	GAWTC	5 cut(s)	8, 71, 121, 352, 686
Tru1I	TTAA	3 cut(s)	32, 294, 720
Tru9I	TTAA	3 cut(s)	32, 294, 720
TscAI	CASTG	2 cut(s)	411, 824
TseI	GCWGC	2 cut(s)	450, 635
TspDTI	ATGAA	8 cut(s)	164, 184, 332, 449, 502, 557, 618, 653
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	411, 824
VpaK11BI	GGWCC	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.