Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004860

Physical Location & Seq

Genomic Coordinates Forward (+)

28681355 .. 28682271

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0293500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGACGAGCAATTGGAAGAGGACACTGGGAAATGTGAGGTCATTCATAGGCAATTCGATGGGAGGCCTAAGAGGAGGAAGCAACTTGGCCTCCTGGGTAGTCGCCGGAACCCTAGCTTACTTCCTCTGGGTCAAGCCCTCACAAGAACTCAAGCGAGAACAACAGGAAAGGGCTGCTTTGGCAGCTTTGGCAGAAGCTTCGAATCCAAATAGATACATAGAGAAACGGAAACCCATTCCTGATCCACAGGAGACTGGACTGATATATGGAAACAAGAATAGAAATAGAAAACCAGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.22

Weight (kDa)

10.15

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35081 FvH4_5g35082 FvH4_5g35230
rosa_chinensis	RchiOBHm_Chr0c11g0499531 RchiOBHm_Chr7g0236081 RchiOBHm_Chr7g0236361
rosa_multiflora	Rmu_sc0002449.1_g000017
rosa_roxburghii	Rroxscaffold_3G00225120 Rroxscaffold_3G00225130 Rroxscaffold_3G00225150 Rroxscaffold_3G00225160 Rroxscaffold_3G00225180 Rroxscaffold_3G00225200 Rroxscaffold_3G00225430 Rroxscaffold_3G00225440
rosa_rugosa	Rorug07G0117500 Rorug07G0286400 Rorug07G0293500 Rorug07G0293600 Rorug07G0296800
rosa_samantha	Rh1DG165500 Rh5DG246000 Rh7AG448400 Rh7AG448500 Rh7AG448900 Rh7AG449000 Rh7AG449100 Rh7AG449200
rosa_wichuraiana	Rw0G007960 Rw0G019900 Rw5G021720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	3 cut(s)	116, 185, 197
AluI	AGCT	3 cut(s)	116, 185, 197
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	64, 87
ApeKI	GCWGC	2 cut(s)	173, 182
AsuII	TTCGAA	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	160, 194
BccI	CCATC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	174, 183
BlsI	GCNGC	2 cut(s)	175, 184
Bme1390I	CCNGG	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse1I	ACTGG	2 cut(s)	30, 259
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	30, 259
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	160, 194
BshFI	GGCC	2 cut(s)	66, 89
BsiSI	CCGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	66, 89
Bsp119I	TTCGAA	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	66, 89
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	30, 259
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	160, 194
BsuRI	GGCC	2 cut(s)	66, 89
BtsIMutI	CAGTG	1 cut(s)	23
CviJI	RGCY	7 cut(s)	66, 89, 116, 136, 173, 185, 197
CviKI_1	RGCY	7 cut(s)	66, 89, 116, 136, 173, 185, 197
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	92
FaiI	YATR	4 cut(s)	47, 218, 265, 267
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
Fnu4HI	GCNGC	2 cut(s)	174, 183
Fsp4HI	GCNGC	2 cut(s)	174, 183
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	174, 183
HaeIII	GGCC	2 cut(s)	66, 89
HapII	CCGG	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
HpyF3I	CTNAG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	9 cut(s)	11, 79, 106, 112, 118, 149, 233, 240, 252
Lsp1109I	GCAGC	2 cut(s)	160, 194
MaeI	CTAG	1 cut(s)	113
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	28
MfeI	CAATTG	1 cut(s)	10
MluCI	AATT	2 cut(s)	10, 52
MnlI	CCTC	8 cut(s)	12, 30, 56, 65, 68, 100, 134, 148
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
NdeII	GATC	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	175, 184
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	109
SatI	GCNGC	2 cut(s)	174, 183
Sau3AI	GATC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	4 cut(s)	41, 118, 187, 199
SfuI	TTCGAA	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	10, 52
SseBI	AGGCCT	1 cut(s)	66
SspMI	CTAG	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	92
TaqI	TCGA	2 cut(s)	56, 200
TasI	AATT	2 cut(s)	10, 52
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	173, 182
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	30
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.