Rroxscaffold_3G00225430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004860
Physical Location & Seq
Forward (+)
8694191 .. 8695414
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225430.1

Sequence Viewer

Length: 636 bp
ATGGGCGATTCTGGGTTTGATGTTTCGGGGTTGAATCTCCTCTCGGAGGTTGCAGATCTTGCTGCCTTCGATTCCAACACAAGGGCTTGTGATGTTGTTGCGATTCAGATGTTGATGGAGTTCAAGATTATGAAGAAGAAGGGCTTGCTGGCCGCACATCTGGAGAAGACCTTCTTCATTCCCAAGAAGAAAAGGTCTAATCTTTCTATTTCTCTTTCTATTTCTAAGAGGACTGACTTGTTGGCTTTCTGTATACCCAAAAAGAAAAGATCTAATCTTGTTTCTCATATGATGATGAAAAGGAAGAGATCTGGGGAGCAAGATGGTCAGATTCCAAGACTAAAGAGGCGGAGAACTATTACTGGAGATGATTTGGGTTCTCAATTGGCCATGCCCTCTCGTTCTCAAGAAATGAAAAACAAGATTAGCAGCCACGTCCCACTCTGGTCATTCCAAAGAAAATCCCATCTTCGATTTTCCCTCATCAAGCTTCATCTATCTGCCGCCAGGACAACTGCGAATGATGTTTCTGAGGTGCCTGTGACTCCTATGGATAATGTTGTTGATGTTCCTACGCCTACTAGCTCTAGCCGTTTACCTTATAACTACTGTTGGGAAGATTCTGAAGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.72

Weight (kDa)

9.83

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 535
AccI GTMKAC 1 cut(s) 253
AciI CCGC 3 cut(s) 153, 349, 504
AcoI YGGCCR 2 cut(s) 150, 387
AfiI CCNNNNNNNGG 2 cut(s) 46, 81
AgsI TTSAA 2 cut(s) 34, 124
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 1 cut(s) 506
AluBI AGCT 2 cut(s) 490, 585
AluI AGCT 2 cut(s) 490, 585
AoxI GGCC 2 cut(s) 150, 387
ApeKI GCWGC 2 cut(s) 62, 429
Asp700I GAANNNNTTC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 389
BanI GGYRCC 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 49, 441
BccI CCATC 3 cut(s) 109, 317, 474
BceAI ACGGC 1 cut(s) 576
BciT130I CCWGG 1 cut(s) 508
BfaI CTAG 2 cut(s) 582, 588
BglII AGATCT 3 cut(s) 55, 269, 308
BisI GCNGC 4 cut(s) 63, 153, 430, 504
BlsI GCNGC 4 cut(s) 64, 154, 431, 505
Bme1390I CCNGG 1 cut(s) 508
BmgBI CACGTC 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 620
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 182, 384
BpuEI CTTGAG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 81
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 508
BseGI GGATG 1 cut(s) 635
BseLI CCNNNNNNNGG 2 cut(s) 46, 81
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 49, 441
BshFI GGCC 2 cut(s) 152, 389
BshNI GGYRCC 1 cut(s) 535
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 46, 81
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 2 cut(s) 152, 389
Bsp143I GATC 3 cut(s) 55, 269, 308
BspACI CCGC 3 cut(s) 153, 349, 504
BspANI GGCC 2 cut(s) 152, 389
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 535
BsrI ACTGG 1 cut(s) 367
BssMI GATC 3 cut(s) 55, 269, 308
BssNAI GTATAC 1 cut(s) 254
Bst1107I GTATAC 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 146, 150
BstDEI CTNAG 2 cut(s) 225, 531
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 635
BstKTI GATC 3 cut(s) 58, 272, 311
BstMBI GATC 3 cut(s) 55, 269, 308
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 506
BstV1I GCAGC 2 cut(s) 49, 441
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 3 cut(s) 55, 269, 308
BstYI RGATCY 3 cut(s) 55, 269, 308
BstZ17I GTATAC 1 cut(s) 254
BsuRI GGCC 2 cut(s) 152, 389
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 146, 150
CviAII CATG 1 cut(s) 391
CviJI RGCY 9 cut(s) 86, 144, 152, 245, 389, 432, 490, 585, 591
CviKI_1 RGCY 9 cut(s) 86, 144, 152, 245, 389, 432, 490, 585, 591
DdeI CTNAG 2 cut(s) 225, 531
DpnI GATC 3 cut(s) 57, 271, 310
DpnII GATC 3 cut(s) 55, 269, 308
EaeI YGGCCR 2 cut(s) 150, 387
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 506
FaeI CATG 1 cut(s) 394
FaiI YATR 7 cut(s) 131, 254, 288, 290, 392, 551, 603
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 158, 190
FaqI GGGAC 1 cut(s) 422
FatI CATG 1 cut(s) 390
FauNDI CATATG 1 cut(s) 288
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 63, 153, 430, 504
Fsp4HI GCNGC 4 cut(s) 63, 153, 430, 504
FspBI CTAG 2 cut(s) 582, 588
GluI GCNGC 4 cut(s) 63, 153, 430, 504
GsuI CTGGAG 2 cut(s) 182, 384
HaeIII GGCC 2 cut(s) 152, 389
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 7 cut(s) 8, 34, 71, 103, 331, 544, 620
Hpy166II GTNNAC 2 cut(s) 254, 596
Hpy188I TCNGA 5 cut(s) 46, 108, 330, 532, 625
Hpy188III TCNNGA 3 cut(s) 124, 161, 407
Hpy8I GTNNAC 2 cut(s) 254, 596
HpyAV CCTTC 4 cut(s) 76, 133, 181, 620
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 225, 531
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 3 cut(s) 55, 269, 308
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 8 cut(s) 134, 146, 297, 348, 430, 493, 520, 552
Lsp1109I GCAGC 2 cut(s) 49, 441
LweI GCATC 1 cut(s) 620
MaeI CTAG 2 cut(s) 582, 588
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 541
MalI GATC 3 cut(s) 57, 271, 310
MboI GATC 3 cut(s) 55, 269, 308
MboII GAAGA 8 cut(s) 145, 148, 166, 178, 199, 316, 461, 629
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 3 cut(s) 55, 269, 308
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 1 cut(s) 383
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 7 cut(s) 40, 50, 222, 339, 406, 491, 526
Mox20I TGGCCA 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 389
Msp20I TGGCCA 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 508
MunI CAATTG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeI CATATG 1 cut(s) 288
NdeII GATC 3 cut(s) 55, 269, 308
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 537
NmuCI GTSAC 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 6 cut(s) 8, 34, 71, 103, 331, 620
PkrI GCNGC 4 cut(s) 64, 154, 431, 505
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PsiI TTATAA 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 537
PsuI RGATCY 3 cut(s) 55, 269, 308
SatI GCNGC 4 cut(s) 63, 153, 430, 504
Sau3AI GATC 3 cut(s) 55, 269, 308
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 508
SetI ASST 8 cut(s) 51, 173, 197, 438, 492, 537, 587, 601
SfaNI GCATC 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 1 cut(s) 383
SsiI CCGC 3 cut(s) 153, 349, 504
SspMI CTAG 2 cut(s) 582, 588
StyD4I CCNGG 1 cut(s) 506
TaaI ACNGT 1 cut(s) 611
TaiI ACGT 1 cut(s) 438
TaqI TCGA 2 cut(s) 69, 472
TasI AATT 1 cut(s) 383
TauI GCSGC 2 cut(s) 155, 506
TfiI GAWTC 6 cut(s) 8, 34, 71, 103, 331, 620
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 2 cut(s) 62, 429
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 5 cut(s) 146, 166, 311, 428, 482
XagI CCTNNNNNAGG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 2 cut(s) 582, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.