Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004860

Physical Location & Seq

Genomic Coordinates Reverse (-)

8403944 .. 8406527

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGCGATTCTGTTTCAGGGTTGATTCTCCTCTCGGAGGTTGCAGATCTTGCTGCGTCTGATTCCAACACAAGGGCTTCTTCTTCTTCTTTGAAATGTTGCGATGTTGCGATTCAGATGTTGATGGAGTTCAAGGCTATGAGGAAGAAAGGCTTGCTCGCCGCTCATCTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGGTCCAATCTTTCCATTTCTATTTCTATTTCTAAGAGGAGGACTGACTTGTTGGCTTTCTGTATACCCAAAAAGAAAAGATCTAATCTTGTTTCTCATATGATGATGAAAAGGAAGAGATCTGGGGAGCAAGATGGTCAGATTCCAAGACTAAAGAGGCGGAGAACTATTACTGGAGATGTCTTGGGTTCTCAATTGGCCATGCCCTCTCGTTCTCATCAAGAAATGAAAAACATGATTAGCAGCCACGTCCCACTCTGGTCATTCCAAAGGAAATCCCCGCTTCGATTTTCCCTCATCAAGCTTCATCTATCTGCCCCCAGGACAACTGCGAGATGGTGTGTTGAGAATGATGATTCCGAGATGCCTGTGACTCCTATGGATAATGTTGTTGATGTTCCTACGCCTACTAGCTCTAGCTCTTTACCTTATACTACTGTTGGGAAGATTCTGAAGGATGCTAATATGGATTCTGAGGTAGTCGGATCATGGAATGTTCTGCGTAAAAGGAACCATAAGAGTTCTCTTCCTGATCCAGTTGGGTCTATAGGCAACTTCGTTACTTCAGCTACTGTTGCTCCTGTGTCTAATGCTCAAGACCACTGGTGGAGTTTTCTTACTCAAGTAGAAATCATGTCTTCTCTTGGACGTTCCCAGTCTGAATGTTGGAATGCTGGTGCTAAAACTTCCTCTAGTATTATTAGTGATTTTCAGAAGTTCTATTTAATTGATATGTTAGGAAACGTCAACGATTTTGTGTCTGTAAAATATGGTGGTGTTGCGTTTGGACTTGCTCGCTGGATGGATTCGAACTGCTTAATTCACCTAGGGTTTATTGGATCATCTCAGACTGGCTGGTTTAAGAAGACGTATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

39.83

Weight (kDa)

9.84

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35081 FvH4_5g35082 FvH4_5g35230
rosa_chinensis	RchiOBHm_Chr0c11g0499531 RchiOBHm_Chr7g0236081 RchiOBHm_Chr7g0236361
rosa_multiflora	Rmu_sc0002449.1_g000017
rosa_roxburghii	Rroxscaffold_3G00225120 Rroxscaffold_3G00225130 Rroxscaffold_3G00225150 Rroxscaffold_3G00225160 Rroxscaffold_3G00225180 Rroxscaffold_3G00225200 Rroxscaffold_3G00225430 Rroxscaffold_3G00225440
rosa_rugosa	Rorug07G0117500 Rorug07G0286400 Rorug07G0293500 Rorug07G0293600 Rorug07G0296800
rosa_samantha	Rh1DG165500 Rh5DG246000 Rh7AG448400 Rh7AG448500 Rh7AG448900 Rh7AG449000 Rh7AG449100 Rh7AG449200
rosa_wichuraiana	Rw0G007960 Rw0G019900 Rw5G021720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	3 cut(s)	162, 361, 482
AclWI	GGATC	3 cut(s)	694, 728, 1048
AcoI	YGGCCR	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	674, 750
AfiI	CCNNNNNNNGG	2 cut(s)	37, 72
AgsI	TTSAA	2 cut(s)	94, 133
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	521
AluBI	AGCT	4 cut(s)	505, 615, 621, 770
AluI	AGCT	4 cut(s)	505, 615, 621, 770
AlwI	GGATC	3 cut(s)	694, 728, 1048
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	177, 399
ApeKI	GCWGC	2 cut(s)	53, 444
Asp700I	GAANNNNTTC	1 cut(s)	179
AspA2I	CCTAGG	1 cut(s)	1027
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	1016
AsuII	TTCGAA	1 cut(s)	1010
AvaII	GGWCC	1 cut(s)	204
AvrII	CCTAGG	1 cut(s)	1027
BalI	TGGCCA	1 cut(s)	401
BbsI	GAAGAC	2 cut(s)	831, 1073
BbvI	GCAGC	2 cut(s)	40, 456
BccI	CCATC	4 cut(s)	118, 329, 531, 997
BciT130I	CCWGG	1 cut(s)	523
BfaI	CTAG	4 cut(s)	612, 618, 894, 1028
BfmI	CTRYAG	1 cut(s)	747
BglII	AGATCT	3 cut(s)	46, 281, 320
BisI	GCNGC	3 cut(s)	54, 162, 445
BlnI	CCTAGG	1 cut(s)	1027
BlsI	GCNGC	3 cut(s)	55, 163, 446
Bme1390I	CCNGG	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	713
BmrFI	CCNGG	1 cut(s)	523
BmrI	ACTGGG	1 cut(s)	850
BmsI	GCATC	2 cut(s)	555, 649
BmuI	ACTGGG	1 cut(s)	850
BpiI	GAAGAC	2 cut(s)	831, 1073
BpmI	CTGGAG	2 cut(s)	191, 396
Bpu14I	TTCGAA	1 cut(s)	1010
BpuEI	CTTGAG	2 cut(s)	780, 807
BsaJI	CCNNGG	2 cut(s)	521, 1027
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 72
Bse1I	ACTGG	5 cut(s)	379, 737, 809, 856, 1057
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	521, 1027
BseGI	GGATG	2 cut(s)	664, 1008
BseLI	CCNNNNNNNGG	2 cut(s)	37, 72
BseMII	CTCAG	2 cut(s)	666, 1061
BseNI	ACTGG	5 cut(s)	379, 737, 809, 856, 1057
BseRI	GAGGAG	2 cut(s)	20, 253
BseXI	GCAGC	2 cut(s)	40, 456
BshFI	GGCC	2 cut(s)	179, 401
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	37, 72
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	2 cut(s)	179, 401
Bsp119I	TTCGAA	1 cut(s)	1010
Bsp143I	GATC	6 cut(s)	46, 281, 320, 686, 733, 1040
BspACI	CCGC	3 cut(s)	162, 361, 482
BspANI	GGCC	2 cut(s)	179, 401
BspCNI	CTCAG	2 cut(s)	667, 1060
BspLI	GGNNCC	1 cut(s)	713
BspPI	GGATC	3 cut(s)	694, 728, 1048
BspT104I	TTCGAA	1 cut(s)	1010
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	5 cut(s)	379, 737, 809, 856, 1057
BssECI	CCNNGG	2 cut(s)	521, 1027
BssMI	GATC	6 cut(s)	46, 281, 320, 686, 733, 1040
BssNAI	GTATAC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	1027
Bst1107I	GTATAC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	2 cut(s)	640, 775
Bst6I	CTCTTC	2 cut(s)	311, 732
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	1010
BstC8I	GCNNGC	3 cut(s)	155, 159, 997
BstDEI	CTNAG	3 cut(s)	234, 675, 1047
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	664, 1008
BstKTI	GATC	6 cut(s)	49, 284, 323, 689, 736, 1043
BstMBI	GATC	6 cut(s)	46, 281, 320, 686, 733, 1040
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 776
BstNI	CCWGG	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	40, 456
BstV2I	GAAGAC	2 cut(s)	831, 1073
BstX2I	RGATCY	3 cut(s)	46, 281, 320
BstYI	RGATCY	3 cut(s)	46, 281, 320
BstZ17I	GTATAC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	179, 401
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	2 cut(s)	664, 1008
BtsIMutI	CAGTG	1 cut(s)	802
Cac8I	GCNNGC	3 cut(s)	155, 159, 997
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	1 cut(s)	45
CviAII	CATG	4 cut(s)	403, 436, 690, 835
DdeI	CTNAG	3 cut(s)	234, 675, 1047
DpnI	GATC	6 cut(s)	48, 283, 322, 688, 735, 1042
DpnII	GATC	6 cut(s)	46, 281, 320, 686, 733, 1040
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	311, 732
EarI	CTCTTC	2 cut(s)	311, 732
EciI	GGCGGA	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	1027
Eco147I	AGGCCT	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	674, 750
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	1027
ErhI	CCWWGG	1 cut(s)	1027
FaeI	CATG	4 cut(s)	406, 439, 693, 838
FalI	AAGNNNNNCTT	6 cut(s)	64, 96, 137, 169, 167, 199
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	4 cut(s)	402, 435, 689, 834
FauI	CCCGC	1 cut(s)	489
FauNDI	CATATG	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	54, 162, 445
FokI	GGATG	2 cut(s)	671, 1015
Fsp4HI	GCNGC	3 cut(s)	54, 162, 445
FspBI	CTAG	4 cut(s)	612, 618, 894, 1028
GluI	GCNGC	3 cut(s)	54, 162, 445
GsuI	CTGGAG	2 cut(s)	191, 396
HaeIII	GGCC	2 cut(s)	179, 401
HgaI	GACGC	1 cut(s)	45
Hin1II	CATG	4 cut(s)	406, 439, 693, 838
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HindIII	AAGCTT	1 cut(s)	503
HphI	GGTGA	1 cut(s)	1016
Hpy166II	GTNNAC	2 cut(s)	266, 949
Hpy188III	TCNNGA	4 cut(s)	170, 422, 731, 797
Hpy8I	GTNNAC	2 cut(s)	266, 949
HpyAV	CCTTC	3 cut(s)	169, 190, 649
HpyCH4III	ACNGT	2 cut(s)	640, 775
HpyCH4IV	ACGT	4 cut(s)	450, 850, 945, 1070
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 776
HpyF3I	CTNAG	3 cut(s)	234, 675, 1047
HpySE526I	ACGT	4 cut(s)	450, 850, 945, 1070
Hsp92II	CATG	4 cut(s)	406, 439, 693, 838
Kzo9I	GATC	6 cut(s)	46, 281, 320, 686, 733, 1040
LmnI	GCTCC	2 cut(s)	328, 784
Lsp1109I	GCAGC	2 cut(s)	40, 456
LweI	GCATC	2 cut(s)	555, 649
MaeI	CTAG	4 cut(s)	612, 618, 894, 1028
MaeII	ACGT	4 cut(s)	450, 850, 945, 1070
MaeIII	GTNAC	2 cut(s)	571, 760
MalI	GATC	6 cut(s)	48, 283, 322, 688, 735, 1042
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	6 cut(s)	46, 281, 320, 686, 733, 1040
MfeI	CAATTG	1 cut(s)	395
MflI	RGATCY	3 cut(s)	46, 281, 320
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	395, 927, 1020
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	3 cut(s)	90, 664, 848
Mox20I	TGGCCA	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	4 cut(s)	926, 1019, 1062, 1078
Msp20I	TGGCCA	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	523
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	2 cut(s)	50, 776
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	6 cut(s)	46, 281, 320, 686, 733, 1040
NlaIII	CATG	4 cut(s)	406, 439, 693, 838
NlaIV	GGNNCC	1 cut(s)	713
NmuCI	GTSAC	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	1010
PceI	AGGCCT	1 cut(s)	179
PctI	GAATGC	1 cut(s)	877
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	9 cut(s)	8, 25, 62, 112, 343, 557, 649, 671, 1007
PkrI	GCNGC	3 cut(s)	55, 163, 446
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	1 cut(s)	713
PspPI	GGNCC	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	3 cut(s)	46, 281, 320
SaqAI	TTAA	4 cut(s)	926, 1019, 1062, 1078
SatI	GCNGC	3 cut(s)	54, 162, 445
Sau3AI	GATC	6 cut(s)	46, 281, 320, 686, 733, 1040
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	555, 649
SfcI	CTRYAG	1 cut(s)	747
SfuI	TTCGAA	1 cut(s)	1010
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	795, 822
SmoI	CTYRAG	2 cut(s)	795, 822
Sse9I	AATT	3 cut(s)	395, 927, 1020
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	3 cut(s)	162, 361, 482
SspMI	CTAG	4 cut(s)	612, 618, 894, 1028
StuI	AGGCCT	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	521
StyI	CCWWGG	1 cut(s)	1027
TaaI	ACNGT	2 cut(s)	640, 775
TaiI	ACGT	4 cut(s)	453, 853, 948, 1073
TaqI	TCGA	2 cut(s)	487, 1010
TasI	AATT	3 cut(s)	395, 927, 1020
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	9 cut(s)	8, 25, 62, 112, 343, 557, 649, 671, 1007
Tru1I	TTAA	4 cut(s)	926, 1019, 1062, 1078
Tru9I	TTAA	4 cut(s)	926, 1019, 1062, 1078
TscAI	CASTG	1 cut(s)	809
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	53, 444
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	4 cut(s)	175, 323, 443, 497
TspRI	CASTG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	35
XmaJI	CCTAGG	1 cut(s)	1027
XmiI	GTMKAC	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	4 cut(s)	612, 618, 894, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.