Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004860

Physical Location & Seq

Genomic Coordinates Reverse (-)

61370841 .. 61371419

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG449000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGCGATTCTGGTTTTGATGTTTCAGGGTTAAATCTCCTCTCAGAGGTTGCAGATCTTGCTGGCTTTGATTCCAACACAAGGGCTTCCTCTTCTTCTTTGAAATCTTGCGATGTTGTGATTCAGATGTTGACGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTGGCCGCTCATCTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGGTCCAATTTTTCTATTTCTCTTTCTTTTTCTAAGAGGAGGACTGACTTGTTGGCTTTCTGTATACCCAAAAAGAAAAGATTTAATCTTGTTTCTCATATGATGATGAAAAGGAAGAGATCTGGGGAGCAAGATGGTCAGATTCCAAGACTAAAGAGGCGGAGAACTATTACTGGAGATGTCTTGGGTTCTCCACTGGCCATGCCCTCTCGTTCTCAAGAAATGAAAAACATGATTAGCAGCCACGTCCCACTCATGTCATTCCAAAAGAAATCCCCCTTCGATTTTCCCTCATCAACCTTCATCTATCTGCCGCCAGGACAACTGTGGTTAGTTAGTGAGCACATTCTGAGGTATTTTATTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.78

Weight (kDa)

10.29

Isoelectric Point (pI)

71.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35081 FvH4_5g35082 FvH4_5g35230
rosa_chinensis	RchiOBHm_Chr0c11g0499531 RchiOBHm_Chr7g0236081 RchiOBHm_Chr7g0236361
rosa_multiflora	Rmu_sc0002449.1_g000017
rosa_roxburghii	Rroxscaffold_3G00225120 Rroxscaffold_3G00225130 Rroxscaffold_3G00225150 Rroxscaffold_3G00225160 Rroxscaffold_3G00225180 Rroxscaffold_3G00225200 Rroxscaffold_3G00225430 Rroxscaffold_3G00225440
rosa_rugosa	Rorug07G0117500 Rorug07G0286400 Rorug07G0293500 Rorug07G0293600 Rorug07G0296800
rosa_samantha	Rh1DG165500 Rh5DG246000 Rh7AG448400 Rh7AG448500 Rh7AG448900 Rh7AG449000 Rh7AG449100 Rh7AG449200
rosa_wichuraiana	Rw0G007960 Rw0G019900 Rw5G021720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	3 cut(s)	171, 370, 524
AcoI	YGGCCR	2 cut(s)	168, 408
AfiI	CCNNNNNNNGG	2 cut(s)	46, 81
AgsI	TTSAA	2 cut(s)	103, 142
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	526
Alw21I	GWGCWC	1 cut(s)	555
AoxI	GGCC	3 cut(s)	168, 186, 408
ApeKI	GCWGC	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	528
BglII	AGATCT	2 cut(s)	55, 329
BisI	GCNGC	3 cut(s)	171, 451, 524
BlsI	GCNGC	3 cut(s)	172, 452, 525
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	528
BpmI	CTGGAG	2 cut(s)	200, 405
BpuEI	CTTGAG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 81
Bse1I	ACTGG	2 cut(s)	388, 411
BseBI	CCWGG	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	46, 81
BseMII	CTCAG	2 cut(s)	57, 551
BseNI	ACTGG	2 cut(s)	388, 411
BseRI	GAGGAG	2 cut(s)	29, 262
BseXI	GCAGC	1 cut(s)	462
BshFI	GGCC	3 cut(s)	170, 188, 410
BsiHKAI	GWGCWC	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	46, 81
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	170, 188, 410
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	55, 329
BspACI	CCGC	3 cut(s)	171, 370, 524
BspANI	GGCC	3 cut(s)	170, 188, 410
BspCNI	CTCAG	2 cut(s)	56, 552
BsrBI	CCGCTC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	388, 411
BssMI	GATC	2 cut(s)	55, 329
BssNAI	GTATAC	1 cut(s)	275
Bst1107I	GTATAC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	537
Bst6I	CTCTTC	2 cut(s)	97, 320
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	64, 164, 168
BstDEI	CTNAG	3 cut(s)	43, 243, 560
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstKTI	GATC	2 cut(s)	58, 332
BstMBI	GATC	2 cut(s)	55, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	55, 329
BstYI	RGATCY	2 cut(s)	55, 329
BstZ17I	GTATAC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	170, 188, 410
BtgZI	GCGATG	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	3 cut(s)	64, 164, 168
Cfr13I	GGNCC	1 cut(s)	213
CviAII	CATG	3 cut(s)	412, 442, 466
CviJI	RGCY	8 cut(s)	66, 86, 162, 170, 188, 266, 410, 453
CviKI_1	RGCY	8 cut(s)	66, 86, 162, 170, 188, 266, 410, 453
DdeI	CTNAG	3 cut(s)	43, 243, 560
DpnI	GATC	2 cut(s)	57, 331
DpnII	GATC	2 cut(s)	55, 329
EaeI	YGGCCR	2 cut(s)	168, 408
Eam1104I	CTCTTC	2 cut(s)	97, 320
EarI	CTCTTC	2 cut(s)	97, 320
EciI	GGCGGA	1 cut(s)	385
Eco147I	AGGCCT	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	526
FaeI	CATG	3 cut(s)	415, 445, 469
FaiI	YATR	7 cut(s)	149, 275, 309, 311, 413, 443, 467
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 176, 208
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	3 cut(s)	411, 441, 465
FauNDI	CATATG	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	171, 451, 524
Fsp4HI	GCNGC	3 cut(s)	171, 451, 524
GluI	GCNGC	3 cut(s)	171, 451, 524
GsuI	CTGGAG	2 cut(s)	200, 405
HaeIII	GGCC	3 cut(s)	170, 188, 410
Hin1II	CATG	3 cut(s)	415, 445, 469
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	4 cut(s)	8, 71, 121, 352
Hpy166II	GTNNAC	2 cut(s)	132, 275
Hpy188I	TCNGA	5 cut(s)	46, 126, 351, 561, 578
Hpy188III	TCNNGA	3 cut(s)	142, 179, 428
Hpy8I	GTNNAC	2 cut(s)	132, 275
HpyAV	CCTTC	4 cut(s)	178, 199, 499, 520
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	3 cut(s)	43, 243, 560
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	3 cut(s)	415, 445, 469
Kzo9I	GATC	2 cut(s)	55, 329
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	12, 48, 152, 164, 318, 369, 392, 513, 540
Lsp1109I	GCAGC	1 cut(s)	462
MaeII	ACGT	1 cut(s)	456
MalI	GATC	2 cut(s)	57, 331
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	2 cut(s)	55, 329
MboII	GAAGA	7 cut(s)	84, 87, 163, 166, 184, 217, 337
MflI	RGATCY	2 cut(s)	55, 329
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	1 cut(s)	217
MluNI	TGGCCA	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	9 cut(s)	40, 50, 100, 240, 243, 360, 427, 511, 555
Mox20I	TGGCCA	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	32, 294
Msp20I	TGGCCA	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeI	CATATG	1 cut(s)	309
NdeII	GATC	2 cut(s)	55, 329
NlaIII	CATG	3 cut(s)	415, 445, 469
PceI	AGGCCT	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	4 cut(s)	8, 71, 121, 352
PkrI	GCNGC	3 cut(s)	172, 452, 525
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	55, 329
SaqAI	TTAA	2 cut(s)	32, 294
SatI	GCNGC	3 cut(s)	171, 451, 524
Sau3AI	GATC	2 cut(s)	55, 329
Sau96I	GGNCC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	5 cut(s)	51, 215, 459, 512, 566
SinI	GGWCC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	1 cut(s)	217
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	3 cut(s)	171, 370, 524
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	537
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	1 cut(s)	492
TasI	AATT	1 cut(s)	217
TauI	GCSGC	2 cut(s)	173, 526
TfiI	GAWTC	4 cut(s)	8, 71, 121, 352
Tru1I	TTAA	2 cut(s)	32, 294
Tru9I	TTAA	2 cut(s)	32, 294
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	5 cut(s)	164, 184, 332, 449, 502
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.