Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Reverse (-)

836081 .. 839043

Gene Structure 2963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01503.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGGCCTAGATGGAAAGGAAAGGGCTTCAAGGCTAAAGCACTAGCAGACCCCATGTCAAAGATAGTACTGAAGCTTCAGTCTTCTCTAAATCAATCAAACTGTGAAGGGTTGCTATGTGGGAGTAGTGTGCTTCTCTCAGTGGAAGCAGAACAAGCTGATCTCCTCAACCGTTCGTGCTTCGGCGTAGCCATGGTTACTGCTGAGAAGGATAAGCAGTGGTTTGAGTTGAGTTTGGAAGAGGGCTTTTATCTGAGCTATGCTCTAAGATGCCTCAGGATAGTTGAAGATAAATGTGTGAAGAGTGAGGAGCAGCTATGGGAGTGTATGAAGTCTAGGAATGCATTGTTTTCCTATTATTATAAGGCGTATTGTCATCTTAGGATGAAGAATTGGGTTGTTATGTCGGGGATTACATATGGTGCGGACTTTGTTGCTTACCGTCATCATCCAGAGTTGGTACATTCTGAATATGCAGTGATTGTGTCCTCGGAGGAGGGTGGTGCAAGTAATCGATTGAGGGTGTGGTCTGATGTGCATTGCGCTACTCGGCTTTGTGGAGGTGTGGCAAAGACATTACTGGTTCTTGATATCAGCAGAAATGGTCATGGTGCAGACTCTCCATCGTGTTTGGAGATGTATACTATCAGGGAGCGCACAATCACAAGATGGAGTCCAGAACAGTGCCGCGAGGATCATACAATGGTTGAAAGTGAAAATGGAGCCAAGGAAGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

247

Amino Acids

27.84

Weight (kDa)

6.4

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_endo_N	PF02778	36 - 107	1.7e-10	tRNA intron endonuclease, N-terminal domain
tRNA_int_endo	PF01974	120 - 200	6e-15	tRNA intron endonuclease, catalytic C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	641
AccII	CGCG	1 cut(s)	690
AciI	CCGC	2 cut(s)	425, 688
AclWI	GGATC	1 cut(s)	702
AcuI	CTGAAG	2 cut(s)	62, 92
AfaI	GTAC	2 cut(s)	69, 462
AgsI	TTSAA	3 cut(s)	31, 287, 710
AhdI	GACNNNNNGTC	1 cut(s)	55
AluBI	AGCT	4 cut(s)	76, 158, 258, 316
AluI	AGCT	4 cut(s)	76, 158, 258, 316
AlwI	GGATC	1 cut(s)	702
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	313
AspLEI	GCGC	2 cut(s)	545, 657
AspS9I	GGNCC	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	3 cut(s)	6, 631, 663
BfaI	CTAG	3 cut(s)	9, 44, 336
BisI	GCNGC	2 cut(s)	314, 688
BlsI	GCNGC	2 cut(s)	315, 689
BmcAI	AGTACT	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	6, 724
BmsI	GCATC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
Bsa29I	ATCGAT	1 cut(s)	514
BsaJI	CCNNGG	3 cut(s)	192, 489, 726
Bse1I	ACTGG	1 cut(s)	585
Bse21I	CCTNAGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	538
BseCI	ATCGAT	1 cut(s)	514
BseDI	CCNNGG	3 cut(s)	192, 489, 726
BseGI	GGATG	2 cut(s)	390, 448
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	4 cut(s)	153, 195, 245, 289
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	3 cut(s)	155, 323, 509
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	7
BshVI	ATCGAT	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	160, 694
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	2 cut(s)	425, 688
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	4 cut(s)	152, 196, 246, 288
BspDI	ATCGAT	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	2 cut(s)	6, 724
BspPI	GGATC	1 cut(s)	702
BsrDI	GCAATG	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	192, 489, 726
BssMI	GATC	2 cut(s)	160, 694
BssNAI	GTATAC	1 cut(s)	642
BssT1I	CCWWGG	2 cut(s)	192, 726
Bst1107I	GTATAC	1 cut(s)	642
Bst4CI	ACNGT	4 cut(s)	104, 173, 443, 684
Bst6I	CTCTTC	3 cut(s)	234, 296, 726
BstDEI	CTNAG	6 cut(s)	139, 204, 254, 266, 275, 380
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	390, 448
BstFNI	CGCG	1 cut(s)	690
BstHHI	GCGC	2 cut(s)	545, 657
BstKTI	GATC	2 cut(s)	163, 697
BstMBI	GATC	2 cut(s)	160, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	75
BstZ17I	GTATAC	1 cut(s)	642
Bsu15I	ATCGAT	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	7
BsuTUI	ATCGAT	1 cut(s)	514
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	390, 448
BtsI	GCAGTG	2 cut(s)	224, 483
BtsIMutI	CAGTG	4 cut(s)	147, 224, 483, 689
CfoI	GCGC	2 cut(s)	545, 657
Cfr13I	GGNCC	1 cut(s)	5
ClaI	ATCGAT	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	68, 461
CviAII	CATG	3 cut(s)	55, 193, 608
CviQI	GTAC	2 cut(s)	68, 461
DdeI	CTNAG	6 cut(s)	139, 204, 254, 266, 275, 380
DpnI	GATC	2 cut(s)	162, 696
DpnII	GATC	2 cut(s)	160, 694
DriI	GACNNNNNGTC	1 cut(s)	55
Eam1104I	CTCTTC	3 cut(s)	234, 296, 726
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	3 cut(s)	234, 296, 726
Eco130I	CCWWGG	2 cut(s)	192, 726
Eco32I	GATATC	1 cut(s)	592
Eco57I	CTGAAG	2 cut(s)	62, 92
Eco81I	CCTNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	2 cut(s)	192, 726
EcoT22I	ATGCAT	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	192, 726
FaeI	CATG	3 cut(s)	58, 196, 611
FatI	CATG	3 cut(s)	54, 192, 607
FauNDI	CATATG	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	2 cut(s)	314, 688
FokI	GGATG	2 cut(s)	397, 435
Fsp4HI	GCNGC	2 cut(s)	314, 688
FspBI	CTAG	3 cut(s)	9, 44, 336
GlaI	GCGC	2 cut(s)	544, 656
GluI	GCNGC	2 cut(s)	314, 688
HaeIII	GGCC	1 cut(s)	7
HhaI	GCGC	2 cut(s)	545, 657
Hin1II	CATG	3 cut(s)	58, 196, 611
Hin6I	GCGC	2 cut(s)	543, 655
HinP1I	GCGC	2 cut(s)	543, 655
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	617, 673
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	4 cut(s)	255, 469, 493, 532
Hpy188III	TCNNGA	4 cut(s)	277, 452, 587, 677
Hpy8I	GTNNAC	1 cut(s)	642
HpyAV	CCTTC	2 cut(s)	101, 202
HpyCH4III	ACNGT	4 cut(s)	104, 173, 443, 684
HpyCH4V	TGCA	5 cut(s)	344, 476, 506, 538, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	6 cut(s)	139, 204, 254, 266, 275, 380
Hsp92II	CATG	3 cut(s)	58, 196, 611
HspAI	GCGC	2 cut(s)	543, 655
Kzo9I	GATC	2 cut(s)	160, 694
LmnI	GCTCC	3 cut(s)	310, 652, 722
LpnPI	CCDG	5 cut(s)	262, 465, 566, 634, 690
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	3 cut(s)	9, 44, 336
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	162, 696
MboI	GATC	2 cut(s)	160, 694
MboII	GAAGA	5 cut(s)	75, 251, 299, 313, 400
MluCI	AATT	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	611, 682
Mph1103I	ATGCAT	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	346
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	160, 694
NlaIII	CATG	3 cut(s)	58, 196, 611
NlaIV	GGNNCC	2 cut(s)	6, 724
NmeAIII	GCCGAG	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	346
PctI	GAATGC	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	315, 689
PleI	GAGTC	2 cut(s)	611, 681
PpsI	GAGTC	2 cut(s)	611, 681
PsiI	TTATAA	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	6, 724
PspPI	GGNCC	1 cut(s)	5
RsaI	GTAC	2 cut(s)	69, 462
RsaNI	GTAC	2 cut(s)	68, 461
SatI	GCNGC	2 cut(s)	314, 688
Sau3AI	GATC	2 cut(s)	160, 694
Sau96I	GGNCC	1 cut(s)	5
ScaI	AGTACT	1 cut(s)	69
SchI	GAGTC	2 cut(s)	611, 682
SetI	ASST	5 cut(s)	78, 160, 260, 318, 565
SfaNI	GCATC	1 cut(s)	260
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	2 cut(s)	425, 688
SspMI	CTAG	3 cut(s)	9, 44, 336
StyI	CCWWGG	2 cut(s)	192, 726
TaaI	ACNGT	4 cut(s)	104, 173, 443, 684
TaqI	TCGA	1 cut(s)	514
TasI	AATT	1 cut(s)	391
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	1 cut(s)	690
TscAI	CASTG	4 cut(s)	147, 224, 483, 689
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	344, 401
TspRI	CASTG	4 cut(s)	147, 224, 483, 689
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	3 cut(s)	9, 44, 336
ZrmI	AGTACT	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.