Rmu_sc0000640.1_g000004

tRNA-splicing endonuclease subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000640.1
Physical Location & Seq
Reverse (-)
28516 .. 31171
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000640.1_g000004.1.cds

Sequence Viewer

Length: 1359 bp
atgggacctagatggaaaggaaaggatgcaaaagctaaagctcttgcagatcccatgtcaagtatagtattgcagcttcagtcttctctagtccaatcagatgcccaaggattcttgtgtgggtgcaatgtacttcttgaagcaggaccaaagcaaactgatctccttcttcgtgcctgcttaggcgaacccataaaaaacttgtctggtgaacccattatcaacaaaaacaataagcattggttttactttggcatggaggagacattcttcctatgcaattctctaaaatgcctcaagatacttgatggtttagataactgcccaaagaatgatcaagaacttttccagtacgtgaaatctaagaaaacaacattccccgattcttacaaggcttattctcatcttcggctgaaaaattgggttgtgatgtacgattccaattactgtgcagactttgttgcctaccgccaccatccctctctggtccattctgaatttgttgtgattctgttatcagaaggagatagcgaggcaaatgatcgattgagggtgtggtctgatgtccgtggcaccaaaaggatgtgtaaagttattaagaaggcattgctagttctaagcgttgataaaaatggtcatgatgctacctctccatcatgtttgaaaggatacacagttacagagcacactatttcgagatggagtccggaacaatgccatgaggatcaccctaaagatgtttgggaaccaagtagcagttctgtgccattaatgcctagcggaaccacattaaggtctaaagtggctttagccccacggctagtttctctcgatcaaatattcaaggctttggttattttcttttggaatatcttacccgcctcacgcctagcagacctgcatcaccagcccagtcgctatcctccacccacctgcagtgcctccgcgccagcagcacgatcgatctttcaatccagcctccgcgcgcacagcctagcctccgacccttgtagcaatgcctccgacccggccctgcatcagcgcctccgacccagccttgctgcctctcatctgcaacccaccggcagatccctgcaacctaacaacgatcgcagcaccgatcgatcccgacctccagtccaccgtcgctccccattgtcgcaacaaccaccgatcgcaaacgacgtaacagccccgccccgccctccccgacctctagaccagtccgcccctaaaccagaaggaaggaaagccggaggaggaagaagaaggaaaaaaaaaaaaaaaaggggcaactcgggccgaagtaaggacccggcccggaaagaaaaaaagggcccaaagaacagaaggccctga

Protein Analysis

452

Amino Acids

50.44

Weight (kDa)

9.82

Isoelectric Point (pI)

67.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 941
Acc36I ACCTGC 2 cut(s) 906, 941
AccB1I GGYRCC 1 cut(s) 572
AccII CGCG 3 cut(s) 947, 984, 986
AccIII TCCGGA 1 cut(s) 706
AciI CCGC 8 cut(s) 469, 780, 879, 945, 982, 1196, 1201, 1227
AclWI GGATC 4 cut(s) 44, 732, 1083, 1119
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 3 cut(s) 132, 353, 434
AfiI CCNNNNNNNGG 2 cut(s) 792, 1309
AgsI TTSAA 4 cut(s) 140, 664, 844, 971
AhdI GACNNNNNGTC 1 cut(s) 1136
AjuI GAANNNNNNNTTGG 2 cut(s) 742, 774
AluBI AGCT 3 cut(s) 35, 41, 76
AluI AGCT 3 cut(s) 35, 41, 76
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 4 cut(s) 44, 732, 1083, 1119
Ama87I CYCGRG 1 cut(s) 1297
Aor13HI TCCGGA 1 cut(s) 706
AoxI GGCC 5 cut(s) 1029, 1300, 1317, 1336, 1352
ApaI GGGCCC 1 cut(s) 1340
ApeKI GCWGC 4 cut(s) 73, 953, 1061, 1113
ApoI RAATTY 1 cut(s) 497
AseI ATTAAT 1 cut(s) 770
AspLEI GCGC 4 cut(s) 949, 986, 988, 1044
AsuC2I CCSGG 3 cut(s) 1028, 1316, 1321
AsuHPI GGTGA 3 cut(s) 221, 719, 896
AvaI CYCGRG 1 cut(s) 1297
AvaII GGWCC 4 cut(s) 5, 146, 487, 1312
BaeGI GKGCMC 1 cut(s) 1340
BanI GGYRCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 1340
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 4 cut(s) 85, 965, 1048, 1125
BccI CCATC 5 cut(s) 6, 302, 483, 661, 693
BceAI ACGGC 1 cut(s) 833
BcgI CGANNNNNNTGC 2 cut(s) 942, 976
BciVI GTATCC 1 cut(s) 662
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 3 cut(s) 1028, 1316, 1321
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 8 cut(s) 9, 89, 611, 777, 821, 890, 995, 1217
BfmI CTRYAG 1 cut(s) 934
BfoI RGCGCY 1 cut(s) 1045
BfuAI ACCTGC 2 cut(s) 906, 941
BfuI GTATCC 1 cut(s) 662
BisI GCNGC 4 cut(s) 74, 954, 1062, 1114
BlsI GCNGC 4 cut(s) 75, 955, 1063, 1115
Bme1390I CCNGG 3 cut(s) 1028, 1316, 1321
Bme18I GGWCC 4 cut(s) 5, 146, 487, 1312
BmeRI GACNNNNNGTC 1 cut(s) 1136
BmeT110I CYCGRG 1 cut(s) 1297
BmiI GGNNCC 6 cut(s) 6, 574, 747, 784, 1314, 1338
BmrFI CCNGG 3 cut(s) 1028, 1316, 1321
BmrI ACTGGG 1 cut(s) 906
BmsI GCATC 5 cut(s) 16, 91, 631, 910, 1045
BmuI ACTGGG 1 cut(s) 906
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 1119
Bpu10I CCTNAGC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 3 cut(s) 1028, 1316, 1321
Bsa29I ATCGAT 3 cut(s) 544, 962, 1123
BsaAI YACGTR 1 cut(s) 355
BsaJI CCNNGG 3 cut(s) 106, 568, 815
BsaWI WCCGGW 1 cut(s) 706
BsaXI ACNNNNNCTCC 2 cut(s) 1133, 1163
Bsc4I CCNNNNNNNGG 2 cut(s) 792, 1309
Bse118I RCCGGY 1 cut(s) 1082
Bse1I ACTGG 4 cut(s) 349, 912, 1136, 1222
Bse3DI GCAATG 3 cut(s) 133, 605, 1021
BseAI TCCGGA 1 cut(s) 706
BseCI ATCGAT 3 cut(s) 544, 962, 1123
BseDI CCNNGG 3 cut(s) 106, 568, 815
BseGI GGATG 3 cut(s) 31, 475, 588
BseLI CCNNNNNNNGG 2 cut(s) 792, 1309
BseMI GCAATG 3 cut(s) 133, 605, 1021
BseNI ACTGG 4 cut(s) 349, 912, 1136, 1222
BsePI GCGCGC 1 cut(s) 984
BseRI GAGGAG 2 cut(s) 275, 1272
BseSI GKGCMC 1 cut(s) 1340
BseXI GCAGC 4 cut(s) 85, 965, 1048, 1125
BseYI CCCAGC 1 cut(s) 1052
BsgI GTGCAG 1 cut(s) 471
Bsh1236I CGCG 3 cut(s) 947, 984, 986
Bsh1285I CGRYCG 4 cut(s) 962, 1111, 1123, 1176
BshFI GGCC 5 cut(s) 1031, 1302, 1319, 1338, 1354
BshNI GGYRCC 1 cut(s) 572
BshVI ATCGAT 3 cut(s) 544, 962, 1123
BsiEI CGRYCG 4 cut(s) 962, 1111, 1123, 1176
BsiHKAI GWGCWC 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 1297
BsiSI CCGG 6 cut(s) 707, 1028, 1083, 1254, 1316, 1321
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 792, 1309
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 5 cut(s) 1031, 1302, 1319, 1338, 1354
BsoBI CYCGRG 1 cut(s) 1297
Bsp120I GGGCCC 1 cut(s) 1336
Bsp1286I GDGCHC 2 cut(s) 687, 1340
Bsp13I TCCGGA 1 cut(s) 706
BspACI CCGC 8 cut(s) 469, 780, 879, 945, 982, 1196, 1201, 1227
BspANI GGCC 5 cut(s) 1031, 1302, 1319, 1338, 1354
BspDI ATCGAT 3 cut(s) 544, 962, 1123
BspEI TCCGGA 1 cut(s) 706
BspFNI CGCG 3 cut(s) 947, 984, 986
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 6 cut(s) 6, 574, 747, 784, 1314, 1338
BspMAI CTGCAG 1 cut(s) 938
BspMI ACCTGC 2 cut(s) 906, 941
BspPI GGATC 4 cut(s) 44, 732, 1083, 1119
BspT107I GGYRCC 1 cut(s) 572
BsrDI GCAATG 3 cut(s) 133, 605, 1021
BsrFI RCCGGY 1 cut(s) 1082
BsrI ACTGG 4 cut(s) 349, 912, 1136, 1222
BssAI RCCGGY 1 cut(s) 1082
BssECI CCNNGG 3 cut(s) 106, 568, 815
BssHII GCGCGC 1 cut(s) 984
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 449, 676, 1145
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 178, 951, 986
BstDEI CTNAG 3 cut(s) 181, 363, 617
BstDSI CCRYGG 2 cut(s) 568, 815
BstF5I GGATG 3 cut(s) 31, 475, 588
BstFNI CGCG 3 cut(s) 947, 984, 986
BstH2I RGCGCY 1 cut(s) 1045
BstHHI GCGC 4 cut(s) 949, 986, 988, 1044
BstMAI GTCTC 1 cut(s) 257
BstMCI CGRYCG 4 cut(s) 962, 1111, 1123, 1176
BstMWI GCNNNNNNNGC 5 cut(s) 772, 907, 953, 990, 1299
BstSCI CCNGG 3 cut(s) 1026, 1314, 1319
BstSFI CTRYAG 1 cut(s) 934
BstSLI GKGCMC 1 cut(s) 1340
BstUI CGCG 3 cut(s) 947, 984, 986
BstV1I GCAGC 4 cut(s) 85, 965, 1048, 1125
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 49, 1088
BstYI RGATCY 2 cut(s) 49, 1088
Bsu15I ATCGAT 3 cut(s) 544, 962, 1123
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 5 cut(s) 1031, 1302, 1319, 1338, 1354
BsuTUI ATCGAT 3 cut(s) 544, 962, 1123
BtgI CCRYGG 2 cut(s) 568, 815
BtsCI GGATG 3 cut(s) 31, 475, 588
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 1 cut(s) 943
BveI ACCTGC 2 cut(s) 906, 941
Cac8I GCNNGC 3 cut(s) 178, 951, 986
CciI TCATGA 1 cut(s) 637
CfoI GCGC 4 cut(s) 949, 986, 988, 1044
Cfr10I RCCGGY 1 cut(s) 1082
ClaI ATCGAT 3 cut(s) 544, 962, 1123
Csp6I GTAC 3 cut(s) 131, 352, 433
CviAII CATG 5 cut(s) 55, 256, 638, 657, 719
CviQI GTAC 3 cut(s) 131, 352, 433
DdeI CTNAG 3 cut(s) 181, 363, 617
DriI GACNNNNNGTC 1 cut(s) 1136
Eam1105I GACNNNNNGTC 1 cut(s) 1136
EciI GGCGGA 1 cut(s) 1216
Eco130I CCWWGG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 1340
Eco47I GGWCC 4 cut(s) 5, 146, 487, 1312
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 1297
EcoO109I RGGNCCY 4 cut(s) 5, 1312, 1336, 1353
EcoT14I CCWWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 1340
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 5 cut(s) 58, 259, 641, 660, 722
FaiI YATR 8 cut(s) 56, 65, 194, 257, 277, 639, 658, 720
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 54, 255, 637, 656, 718
FauI CCCGC 3 cut(s) 886, 1203, 1208
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 4 cut(s) 74, 954, 1062, 1114
FokI GGATG 3 cut(s) 38, 462, 595
FriOI GRGCYC 1 cut(s) 1340
Fsp4HI GCNGC 4 cut(s) 74, 954, 1062, 1114
FspBI CTAG 8 cut(s) 9, 89, 611, 777, 821, 890, 995, 1217
GlaI GCGC 4 cut(s) 948, 985, 987, 1043
GluI GCNGC 4 cut(s) 74, 954, 1062, 1114
GsaI CCCAGC 1 cut(s) 1056
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 1045
HaeIII GGCC 5 cut(s) 1031, 1302, 1319, 1338, 1354
HapII CCGG 6 cut(s) 707, 1028, 1083, 1254, 1316, 1321
HhaI GCGC 4 cut(s) 949, 986, 988, 1044
Hin1II CATG 5 cut(s) 58, 259, 641, 660, 722
Hin6I GCGC 4 cut(s) 947, 984, 986, 1042
HinP1I GCGC 4 cut(s) 947, 984, 986, 1042
HinfI GANTC 5 cut(s) 111, 383, 437, 508, 703
HpaII CCGG 6 cut(s) 707, 1028, 1083, 1254, 1316, 1321
HphI GGTGA 3 cut(s) 221, 719, 896
Hpy166II GTNNAC 2 cut(s) 212, 1141
Hpy188I TCNGA 7 cut(s) 100, 496, 520, 562, 1003, 1024, 1049
Hpy188III TCNNGA 9 cut(s) 137, 298, 338, 638, 696, 707, 830, 1128, 1217
Hpy8I GTNNAC 2 cut(s) 212, 1141
Hpy99I CGWCG 2 cut(s) 1149, 1187
HpyAV CCTTC 7 cut(s) 176, 515, 595, 1235, 1239, 1263, 1344
HpyCH4III ACNGT 3 cut(s) 449, 676, 1145
HpyCH4IV ACGT 2 cut(s) 354, 1185
HpyF10VI GCNNNNNNNGC 5 cut(s) 772, 907, 953, 990, 1299
HpyF3I CTNAG 3 cut(s) 181, 363, 617
HpySE526I ACGT 2 cut(s) 354, 1185
Hsp92II CATG 5 cut(s) 58, 259, 641, 660, 722
HspAI GCGC 4 cut(s) 947, 984, 986, 1042
Kpn2I TCCGGA 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 334
LmnI GCTCC 1 cut(s) 1154
Lsp1109I GCAGC 4 cut(s) 85, 965, 1048, 1125
LweI GCATC 5 cut(s) 16, 91, 631, 910, 1045
MaeI CTAG 8 cut(s) 9, 89, 611, 777, 821, 890, 995, 1217
MaeII ACGT 2 cut(s) 354, 1185
MaeIII GTNAC 2 cut(s) 676, 1186
MboII GAAGA 6 cut(s) 75, 161, 262, 398, 1275, 1278
MflI RGATCY 2 cut(s) 49, 1088
MhlI GDGCHC 2 cut(s) 687, 1340
MluCI AATT 4 cut(s) 280, 418, 442, 497
MlyI GAGTC 1 cut(s) 712
MmeI TCCRAC 3 cut(s) 1026, 1047, 1072
MroI TCCGGA 1 cut(s) 706
MseI TTAA 3 cut(s) 597, 770, 791
MspI CCGG 6 cut(s) 707, 1028, 1083, 1254, 1316, 1321
MspR9I CCNGG 3 cut(s) 1028, 1316, 1321
MvnI CGCG 3 cut(s) 947, 984, 986
MwoI GCNNNNNNNGC 5 cut(s) 772, 907, 953, 990, 1299
NciI CCSGG 3 cut(s) 1028, 1316, 1321
NlaIII CATG 5 cut(s) 58, 259, 641, 660, 722
NlaIV GGNNCC 6 cut(s) 6, 574, 747, 784, 1314, 1338
PagI TCATGA 1 cut(s) 637
PaqCI CACCTGC 1 cut(s) 941
PauI GCGCGC 1 cut(s) 984
PcsI WCGNNNNNNNCGW 1 cut(s) 1182
PfeI GAWTC 4 cut(s) 111, 383, 437, 508
PkrI GCNGC 4 cut(s) 75, 955, 1063, 1115
Ple19I CGATCG 4 cut(s) 962, 1111, 1123, 1176
PleI GAGTC 1 cut(s) 711
PpsI GAGTC 1 cut(s) 711
Ppu21I YACGTR 1 cut(s) 355
PpuMI RGGWCCY 2 cut(s) 5, 1312
PshBI ATTAAT 1 cut(s) 770
Psp5II RGGWCCY 2 cut(s) 5, 1312
PspFI CCCAGC 1 cut(s) 1052
PspN4I GGNNCC 6 cut(s) 6, 574, 747, 784, 1314, 1338
PspOMI GGGCCC 1 cut(s) 1336
PspPPI RGGWCCY 2 cut(s) 5, 1312
PstI CTGCAG 1 cut(s) 938
PsuI RGATCY 2 cut(s) 49, 1088
PteI GCGCGC 1 cut(s) 984
PvuI CGATCG 4 cut(s) 962, 1111, 1123, 1176
RsaI GTAC 3 cut(s) 132, 353, 434
RsaNI GTAC 3 cut(s) 131, 352, 433
SaqAI TTAA 3 cut(s) 597, 770, 791
SatI GCNGC 4 cut(s) 74, 954, 1062, 1114
SchI GAGTC 1 cut(s) 712
ScrFI CCNGG 3 cut(s) 1028, 1316, 1321
SduI GDGCHC 2 cut(s) 687, 1340
SfaNI GCATC 5 cut(s) 16, 91, 631, 910, 1045
SfcI CTRYAG 1 cut(s) 934
SinI GGWCC 4 cut(s) 5, 146, 487, 1312
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 4 cut(s) 280, 418, 442, 497
SsiI CCGC 8 cut(s) 469, 780, 879, 945, 982, 1196, 1201, 1227
SspI AATATT 1 cut(s) 840
SspMI CTAG 8 cut(s) 9, 89, 611, 777, 821, 890, 995, 1217
StyD4I CCNGG 3 cut(s) 1026, 1314, 1319
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 3 cut(s) 449, 676, 1145
TaiI ACGT 2 cut(s) 357, 1188
TaqI TCGA 5 cut(s) 544, 695, 831, 962, 1123
TasI AATT 4 cut(s) 280, 418, 442, 497
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 4 cut(s) 111, 383, 437, 508
Tru1I TTAA 3 cut(s) 597, 770, 791
Tru9I TTAA 3 cut(s) 597, 770, 791
TscAI CASTG 1 cut(s) 943
TseI GCWGC 4 cut(s) 73, 953, 1061, 1113
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 1 cut(s) 943
VpaK11BI GGWCC 4 cut(s) 5, 146, 487, 1312
VspI ATTAAT 1 cut(s) 770
XapI RAATTY 1 cut(s) 497
XbaI TCTAGA 1 cut(s) 1216
XspI CTAG 8 cut(s) 9, 89, 611, 777, 821, 890, 995, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.