Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Forward (+)

32073278 .. 32075919

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1250600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGAGAAAATAGTGAGTGGGTAACCCCAGGGGAAGTTCTCGGTAAAGCCTCCAAGTTCAAAGCAGGCAGAGGTGCCTACGTGTCCCCCGACAAGCTCACCGTCTACGCTTCCCTCACTGGGTCCCGCCGTATCCTATCCCCCCCTTCCGACTCGCCCGACCAGAGACCCACTGTGGAAGTAACTGGTCACAAGGCCCATGGTGCCATTCCAGAGCCTGGATCAGTTGTCATTGCTAGAGTTACCAAAGTGATGGAAAGGATGGCTTCTGCTGATATTTTGTGTCTTGGCACGAAATCTGTGCGAGAAAAGTTTAGTGGCATAATTAGGCTTCAAGATGTAAGAGCCACCGAAATTGATAAAGTGGATATGCTTTCGTCTTTTCGCCCGGGTGACATTGTCAGAGCTCATGTTCTGTCCCTTGGAGATGCTAGGGCTTATTATCTGTCAACTGCAAAGAATGAATTGGGTGTTATTTCGGCACAGAGTGCTGCATCAGGTGAAACAATGGTACCAATAAGCTGGACAGAGATGCAGTGCCCCAGGACAGGGCAAATCGAGCAAAGAAAGGTCGCTAAGGTCGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ECR1_N EXOSC1

Protein Analysis

197

Amino Acids

21.01

Weight (kDa)

9.3

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECR1_N	PF14382	8 - 45	3.9e-09	Exosome complex exonuclease RRP4 N-terminal region
EXOSC1	PF10447	100 - 141	1.6e-12	Exosome component EXOSC1/CSL4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	3 cut(s)	74, 203, 511
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	229
AdeI	CACNNNGTG	1 cut(s)	488
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	4 cut(s)	120, 218, 548, 549
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	61, 335
AjnI	CCWGG	3 cut(s)	28, 217, 542
AluBI	AGCT	3 cut(s)	97, 407, 522
AluI	AGCT	3 cut(s)	97, 407, 522
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	491
Asp718I	GGTACC	1 cut(s)	511
AspS9I	GGNCC	2 cut(s)	123, 196
AsuC2I	CCSGG	2 cut(s)	389, 390
AsuHPI	GGTGA	3 cut(s)	91, 404, 512
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	542
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BanI	GGYRCC	3 cut(s)	74, 203, 511
BanII	GRGCYC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	247, 256
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	3 cut(s)	30, 219, 544
BciVI	GTATCC	1 cut(s)	143
BcnI	CCSGG	2 cut(s)	389, 390
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	237, 432
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
Bme1390I	CCNGG	5 cut(s)	30, 219, 389, 390, 544
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	123, 196
BmiI	GGNNCC	5 cut(s)	76, 124, 125, 205, 513
BmrFI	CCNGG	5 cut(s)	30, 219, 389, 390, 544
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	3 cut(s)	418, 503, 522
BmuI	ACTGGG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	576
BpuMI	CCSGG	2 cut(s)	389, 390
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	6 cut(s)	28, 29, 199, 388, 421, 542
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 218, 548, 549
Bse1I	ACTGG	2 cut(s)	124, 190
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	30, 219, 544
BseDI	CCNNGG	6 cut(s)	28, 29, 199, 388, 421, 542
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	4 cut(s)	120, 218, 548, 549
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	124, 190
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	478
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	3 cut(s)	74, 203, 511
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	3 cut(s)	70, 109, 403
BslI	CCNNNNNNNGG	4 cut(s)	120, 218, 548, 549
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	3 cut(s)	70, 109, 403
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	2 cut(s)	409, 542
Bsp143I	GATC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	197
BspLI	GGNNCC	5 cut(s)	76, 124, 125, 205, 513
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	3 cut(s)	74, 203, 511
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	124, 190
BssECI	CCNNGG	6 cut(s)	28, 29, 199, 388, 421, 542
BssMI	GATC	1 cut(s)	221
BssT1I	CCWWGG	2 cut(s)	199, 421
Bst2UI	CCWGG	3 cut(s)	30, 219, 544
Bst4CI	ACNGT	2 cut(s)	103, 175
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	576
BstDSI	CCRYGG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 488, 559
BstNI	CCWGG	3 cut(s)	30, 219, 544
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	5 cut(s)	28, 217, 387, 388, 542
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	478
BstXI	CCANNNNNNTGG	2 cut(s)	253, 522
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	3 cut(s)	117, 171, 542
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	123, 196
Cfr9I	CCCGGG	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	2 cut(s)	200, 410
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
DraIII	CACNNNGTG	1 cut(s)	488
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	199, 421
Eco24I	GRGCYC	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	388
Eco91I	GGTNACC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	123
EcoO65I	GGTNACC	1 cut(s)	22
EcoRII	CCWGG	3 cut(s)	28, 217, 542
EcoT14I	CCWWGG	2 cut(s)	199, 421
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	199, 421
FaeI	CATG	2 cut(s)	203, 413
FaiI	YATR	4 cut(s)	201, 323, 371, 411
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	3 cut(s)	70, 109, 403
FatI	CATG	2 cut(s)	199, 409
FauI	CCCGC	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	2 cut(s)	237, 432
GluI	GCNGC	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	2 cut(s)	203, 413
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	3 cut(s)	91, 404, 512
Hpy166II	GTNNAC	2 cut(s)	106, 450
Hpy188I	TCNGA	3 cut(s)	151, 404, 584
Hpy188III	TCNNGA	2 cut(s)	212, 335
Hpy8I	GTNNAC	2 cut(s)	106, 450
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	2 cut(s)	103, 175
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	455, 494, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 488, 559
HpyF3I	CTNAG	1 cut(s)	576
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	203, 413
KflI	GGGWCCC	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	515
Kzo9I	GATC	1 cut(s)	221
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	3 cut(s)	418, 503, 522
MaeI	CTAG	2 cut(s)	237, 432
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	5 cut(s)	22, 181, 188, 241, 392
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	409, 542
MluCI	AATT	3 cut(s)	324, 354, 464
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	174, 562
MnlI	CCTC	4 cut(s)	61, 65, 125, 578
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	5 cut(s)	30, 219, 389, 390, 544
MvaI	CCWGG	3 cut(s)	30, 219, 544
MwoI	GCNNNNNNNGC	3 cut(s)	203, 488, 559
NciI	CCSGG	2 cut(s)	389, 390
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	203, 413
NlaIV	GGNNCC	5 cut(s)	76, 124, 125, 205, 513
NmuCI	GTSAC	2 cut(s)	188, 392
PasI	CCCWGGG	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	123
Psp6I	CCWGG	3 cut(s)	28, 217, 542
PspEI	GGTNACC	1 cut(s)	22
PspGI	CCWGG	3 cut(s)	28, 217, 542
PspN4I	GGNNCC	5 cut(s)	76, 124, 125, 205, 513
PspPI	GGNCC	2 cut(s)	123, 196
PspPPI	RGGWCCY	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	409
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	2 cut(s)	123, 196
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	5 cut(s)	30, 219, 389, 390, 544
SduI	GDGCHC	2 cut(s)	409, 542
SetI	ASST	8 cut(s)	76, 84, 99, 409, 502, 524, 573, 582
SfaNI	GCATC	3 cut(s)	418, 503, 522
SinI	GGWCC	1 cut(s)	123
SmaI	CCCGGG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	324, 354, 464
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	2 cut(s)	237, 432
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	5 cut(s)	28, 217, 387, 388, 542
StyI	CCWWGG	2 cut(s)	199, 421
TaaI	ACNGT	2 cut(s)	103, 175
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	558
TasI	AATT	3 cut(s)	324, 354, 464
TscAI	CASTG	3 cut(s)	124, 178, 542
TseFI	GTSAC	2 cut(s)	188, 392
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	188, 392
TspDTI	ATGAA	1 cut(s)	477
TspMI	CCCGGG	1 cut(s)	388
TspRI	CASTG	3 cut(s)	124, 178, 542
Tth111I	GACNNNGTC	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	123
XmaI	CCCGGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	237, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.