Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Forward (+)

30032857 .. 30035026

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G352700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGAGAAGATAGTGAGTGGGTGACCCCAGGGGAAGTGCTTGGGAAAGCCTCCAAGTTTAAAGCAGGCAGAGGTGCCTACGTGTCGCCTGACAATCTCACCGTTTATGCTTCCCTCACTGGACTCCGCCGCATCCTATCCCCCCGTCCCGACTCACCCGACCAGAGACCCACTGTGGAAGTAACTGGTCACAAGGCCCATGGTGCCATTCCAGAGCCTGGATCAATTGTCATTGCTAGAGTTACCAAAGTTATGGCAAGAATGGCTTCTGCTGATATTATGTGTCTTGGCACTAAGTCTGTCCGTGAAAAATTTACCGGTATAATCAGGCTTCAAGATGTTCGAGCAACCGAGATCGACAAAGTGGATATGCACATGTCTTTTCACCCTGGTGACATTGTCAGAGCTGTTGTGCTGTCCCTTGGAGACGCTAGGGCTTATTATCTGTCAACTGCAAAGAACGAATTAGGTGTTATTTCTGCCCAGAGTGCAGCAGGTGCAACAATGGTGCCAATAAGCTGGACAGAGATGCAATGCCCTCTTACAGGGCAAATTGAGCACAGAAAGGTTGCTAAGGTCGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ECR1_N EXOSC1

Protein Analysis

196

Amino Acids

20.91

Weight (kDa)

9.14

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	3 cut(s)	74, 203, 508
AccB7I	CCANNNNNTGG	1 cut(s)	218
AciI	CCGC	2 cut(s)	127, 130
AclWI	GGATC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	218, 545
AflIII	ACRYGT	2 cut(s)	81, 375
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	3 cut(s)	28, 217, 388
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	2 cut(s)	407, 519
AluI	AGCT	2 cut(s)	407, 519
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	160, 420
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	311
AsiGI	ACCGGT	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	5 cut(s)	34, 91, 147, 377, 404
BanI	GGYRCC	3 cut(s)	74, 203, 508
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	503
BciT130I	CCWGG	3 cut(s)	30, 219, 390
BcoDI	GTCTC	2 cut(s)	160, 420
BfaI	CTAG	2 cut(s)	237, 432
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	2 cut(s)	130, 492
BlsI	GCNGC	2 cut(s)	131, 493
Bme1390I	CCNGG	3 cut(s)	30, 219, 390
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	3 cut(s)	76, 205, 510
BmrFI	CCNGG	3 cut(s)	30, 219, 390
BmsI	GCATC	2 cut(s)	141, 519
Bpu10I	CCTNAGC	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	5 cut(s)	28, 29, 199, 388, 421
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 545
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	124, 190
Bse3DI	GCAATG	2 cut(s)	231, 539
BseBI	CCWGG	3 cut(s)	30, 219, 390
BseDI	CCNNGG	5 cut(s)	28, 29, 199, 388, 421
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	218, 545
BseMI	GCAATG	2 cut(s)	231, 539
BseNI	ACTGG	2 cut(s)	124, 190
BseXI	GCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	3 cut(s)	74, 203, 508
BshTI	ACCGGT	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	132, 403
BslI	CCNNNNNNNGG	2 cut(s)	218, 545
BsmAI	GTCTC	2 cut(s)	160, 420
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	2 cut(s)	132, 403
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	221, 354
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	2 cut(s)	127, 130
BspANI	GGCC	1 cut(s)	197
BspLI	GGNNCC	3 cut(s)	76, 205, 510
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	3 cut(s)	74, 203, 508
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	231, 539
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	124, 190
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	5 cut(s)	28, 29, 199, 388, 421
BssMI	GATC	2 cut(s)	221, 354
BssT1I	CCWWGG	2 cut(s)	199, 421
Bst2UI	CCWGG	3 cut(s)	30, 219, 390
Bst4CI	ACNGT	2 cut(s)	103, 175
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	294, 573
BstDSI	CCRYGG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	224, 357
BstMAI	GTCTC	2 cut(s)	160, 420
BstMBI	GATC	2 cut(s)	221, 354
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 263, 488, 497, 556
BstNI	CCWGG	3 cut(s)	30, 219, 390
BstNSI	RCATGY	1 cut(s)	379
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	28, 217, 388
BstV1I	GCAGC	1 cut(s)	503
BstXI	CCANNNNNNTGG	2 cut(s)	253, 519
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	117, 171
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	437
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	2 cut(s)	200, 376
CviJI	RGCY	8 cut(s)	50, 197, 217, 266, 331, 407, 437, 519
CviKI_1	RGCY	8 cut(s)	50, 197, 217, 266, 331, 407, 437, 519
DdeI	CTNAG	2 cut(s)	294, 573
DpnI	GATC	2 cut(s)	223, 356
DpnII	GATC	2 cut(s)	221, 354
DraI	TTTAAA	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	199, 421
Eco31I	GGTCTC	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	22
EcoNI	CCTNNNNNAGG	1 cut(s)	543
EcoO65I	GGTNACC	1 cut(s)	22
EcoRII	CCWGG	3 cut(s)	28, 217, 388
EcoT14I	CCWWGG	2 cut(s)	199, 421
ErhI	CCWWGG	2 cut(s)	199, 421
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	2 cut(s)	203, 379
FaiI	YATR	7 cut(s)	108, 201, 254, 281, 323, 371, 377
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	2 cut(s)	132, 403
FatI	CATG	2 cut(s)	199, 375
Fnu4HI	GCNGC	2 cut(s)	130, 492
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	130, 492
FspBI	CTAG	2 cut(s)	237, 432
GluI	GCNGC	2 cut(s)	130, 492
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	203, 379
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	123, 152
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	5 cut(s)	34, 91, 147, 377, 404
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	2 cut(s)	404, 581
Hpy188III	TCNNGA	3 cut(s)	149, 212, 335
Hpy8I	GTNNAC	1 cut(s)	450
HpyCH4III	ACNGT	2 cut(s)	103, 175
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	373, 455, 491, 500, 532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 263, 488, 497, 556
HpyF3I	CTNAG	2 cut(s)	294, 573
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	203, 379
Kzo9I	GATC	2 cut(s)	221, 354
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	2 cut(s)	141, 519
MaeI	CTAG	2 cut(s)	237, 432
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	5 cut(s)	22, 181, 188, 241, 392
MalI	GATC	2 cut(s)	223, 356
MboI	GATC	2 cut(s)	221, 354
MboII	GAAGA	1 cut(s)	20
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	4 cut(s)	225, 311, 464, 552
MlyI	GAGTC	2 cut(s)	117, 146
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	5 cut(s)	61, 65, 125, 549, 575
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	390
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	30, 219, 390
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	3 cut(s)	30, 219, 390
MwoI	GCNNNNNNNGC	5 cut(s)	203, 263, 488, 497, 556
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	221, 354
NlaIII	CATG	2 cut(s)	203, 379
NlaIV	GGNNCC	3 cut(s)	76, 205, 510
NmuCI	GTSAC	3 cut(s)	22, 188, 392
NspI	RCATGY	1 cut(s)	379
OliI	CACNNNNGTG	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	485
PasI	CCCWGGG	1 cut(s)	29
PciI	ACATGT	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	265
PflFI	GACNNNGTC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	131, 493
PleI	GAGTC	2 cut(s)	117, 146
PpsI	GAGTC	2 cut(s)	117, 146
Ppu21I	YACGTR	1 cut(s)	82
PscI	ACATGT	1 cut(s)	375
Psp6I	CCWGG	3 cut(s)	28, 217, 388
PspEI	GGTNACC	1 cut(s)	22
PspGI	CCWGG	3 cut(s)	28, 217, 388
PspN4I	GGNNCC	3 cut(s)	76, 205, 510
PspPI	GGNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	130, 492
Sau3AI	GATC	2 cut(s)	221, 354
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	117, 146
ScrFI	CCNGG	3 cut(s)	30, 219, 390
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	8 cut(s)	76, 84, 409, 472, 499, 521, 570, 579
SfaNI	GCATC	2 cut(s)	141, 519
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	4 cut(s)	225, 311, 464, 552
SsiI	CCGC	2 cut(s)	127, 130
SspMI	CTAG	2 cut(s)	237, 432
StyD4I	CCNGG	3 cut(s)	28, 217, 388
StyI	CCWWGG	2 cut(s)	199, 421
TaaI	ACNGT	2 cut(s)	103, 175
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	343, 357
TasI	AATT	4 cut(s)	225, 311, 464, 552
TauI	GCSGC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	124, 178
TseFI	GTSAC	3 cut(s)	22, 188, 392
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	3 cut(s)	22, 188, 392
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	2 cut(s)	124, 178
Tth111I	GACNNNGTC	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	543
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	2 cut(s)	237, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.