Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Reverse (-)

73613242 .. 73614011

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0618600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCCATGGCTGATGGCTAGCGATGCTCGGTTGGTCACCAGCGTGATCGACGAGTGCAAAGGGGTTTTTGAAGGATTGGAGTCGTTGGTCGATGTTGGAGGTGGTACAGGAACTGTGGCGAAGGCCATTGCTGATGCATTCCCACATATTGAATGCACGGTACTTGATCTCCCACATGTGGTAGCTCATCTGCAAGGAAGTAAGAACTTGAAATATACTGGAGGTGACATGTTTGAGGCAGTTCCTCCTGCCCATGCAGTTTTACTCAAGTGGATATTGCATGACTGGAATGATGAAGAATGTGTCAAAATACTTAAGCGATCTAAAGAGGCAATTACAAGCAAGGACAAGAAAGGCAAGGTGATTATCATAGATATGATCATGGAGAACCAGAAAGGCGAAGAGGAATCAATTGAAACGCAGCTGTTCTTTGACATGTTGATGATGGTCCTCTCACAGGAAAAGAAAGGAATGAGAAAGAATGGGCTAAGCTCTTCACTGATGCTGGTTTCAGTGACTATAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

175

Amino Acids

19.34

Weight (kDa)

5.55

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	7 - 153	1.9e-40	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	106, 162
AfiI	CCNNNNNNNGG	2 cut(s)	178, 457
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	3 cut(s)	175, 228, 435
AgsI	TTSAA	4 cut(s)	71, 152, 211, 416
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	3 cut(s)	185, 424, 492
AluI	AGCT	3 cut(s)	185, 424, 492
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	3 cut(s)	28, 236, 373
AsuNHI	GCTAGC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	7, 439
BclI	TGATCA	1 cut(s)	378
BfaI	CTAG	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	422
BlpI	GCTNAGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmsI	GCATC	3 cut(s)	13, 124, 492
BmtI	GCTAGC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 457
Bse1I	ACTGG	2 cut(s)	223, 290
Bse3DI	GCAATG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	178, 457
BseMI	GCAATG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	223, 290
BseXI	GCAGC	1 cut(s)	433
BshFI	GGCC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	178, 457
BsmI	GAATGC	2 cut(s)	137, 158
BsnI	GGCC	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	45, 166, 320, 378
Bsp1720I	GCTNAGC	1 cut(s)	488
Bsp19I	CCATGG	1 cut(s)	5
BspANI	GGCC	1 cut(s)	125
BspOI	GCTAGC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	499
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	223, 290
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	4 cut(s)	45, 166, 320, 378
BssT1I	CCWWGG	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	115, 160
Bst6I	CTCTTC	2 cut(s)	396, 499
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	488
BstDSI	CCRYGG	1 cut(s)	5
BstEII	GGTNACC	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstKTI	GATC	4 cut(s)	48, 169, 323, 381
BstMBI	GATC	4 cut(s)	45, 166, 320, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	3 cut(s)	179, 232, 439
BstPI	GGTNACC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	497, 519
Cac8I	GCNNGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	105, 161
CviAII	CATG	7 cut(s)	6, 176, 229, 254, 281, 382, 436
CviJI	RGCY	7 cut(s)	10, 17, 125, 185, 424, 487, 492
CviKI_1	RGCY	7 cut(s)	10, 17, 125, 185, 424, 487, 492
CviQI	GTAC	2 cut(s)	105, 161
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	4 cut(s)	47, 168, 322, 380
DpnII	GATC	4 cut(s)	45, 166, 320, 378
Eam1104I	CTCTTC	2 cut(s)	396, 499
EarI	CTCTTC	2 cut(s)	396, 499
Eco130I	CCWWGG	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	7 cut(s)	9, 179, 232, 257, 284, 385, 439
FatI	CATG	7 cut(s)	5, 175, 228, 253, 280, 381, 435
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	7 cut(s)	9, 179, 232, 257, 284, 385, 439
HinfI	GANTC	2 cut(s)	80, 407
HphI	GGTGA	3 cut(s)	28, 236, 373
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	65, 115
HpyCH4III	ACNGT	2 cut(s)	115, 160
HpyCH4V	TGCA	6 cut(s)	57, 137, 156, 193, 257, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	488
Hsp92II	CATG	7 cut(s)	9, 179, 232, 257, 284, 385, 439
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	4 cut(s)	45, 166, 320, 378
LguI	GCTCTTC	1 cut(s)	499
LpnPI	CCDG	8 cut(s)	52, 93, 204, 261, 271, 404, 443, 491
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	3 cut(s)	13, 124, 492
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	34, 224, 514
MalI	GATC	4 cut(s)	47, 168, 322, 380
MboI	GATC	4 cut(s)	45, 166, 320, 378
MboII	GAAGA	3 cut(s)	308, 413, 486
MfeI	CAATTG	1 cut(s)	411
MluCI	AATT	2 cut(s)	333, 411
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	92, 215, 229, 255, 322, 397, 461
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	3 cut(s)	41, 374, 440
MspA1I	CMGCKG	1 cut(s)	424
MspCI	CTTAAG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	2 cut(s)	137, 158
MwoI	GCNNNNNNNGC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	5
NdeII	GATC	4 cut(s)	45, 166, 320, 378
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	7 cut(s)	9, 179, 232, 257, 284, 385, 439
NmuCI	GTSAC	3 cut(s)	34, 224, 514
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	3 cut(s)	179, 232, 439
OliI	CACNNNNGTG	1 cut(s)	41
PciI	ACATGT	3 cut(s)	175, 228, 435
PciSI	GCTCTTC	1 cut(s)	499
PctI	GAATGC	2 cut(s)	137, 158
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	3 cut(s)	175, 228, 435
PspEI	GGTNACC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	106, 162
RsaNI	GTAC	2 cut(s)	105, 161
RseI	CAYNNNNRTG	3 cut(s)	41, 374, 440
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	4 cut(s)	45, 166, 320, 378
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	89
SetI	ASST	6 cut(s)	103, 187, 226, 363, 426, 494
SfaNI	GCATC	3 cut(s)	13, 124, 492
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	3 cut(s)	41, 374, 440
SmlI	CTYRAG	2 cut(s)	266, 314
SmoI	CTYRAG	2 cut(s)	266, 314
Sse9I	AATT	2 cut(s)	333, 411
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	115, 160
TaqI	TCGA	2 cut(s)	48, 90
TasI	AATT	2 cut(s)	333, 411
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	504, 519
TseFI	GTSAC	3 cut(s)	34, 224, 514
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	3 cut(s)	34, 224, 514
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	504, 519
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	455
XceI	RCATGY	3 cut(s)	179, 232, 439
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.