Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Forward (+)

23760023 .. 23762107

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGAGAAAATAGTGAGTGGGTAACCCCAGGGGAAGTTCTCGGTAAAGCCTCCAAGTTCAAAGCAGGCAGAGGTGCCTACGTGTCCCCCGACAAGCTCACTGTCTACGCTTCCCTCACCGGATCCCGCCGCATCCTATCCCCCCCTCCCGGCTCGCCCGACCAGAGACCCACTGTGGAAGTAACTGGTCACAAGGCCCATGGTGCCATTCCAGAGCCTGGATCAGTTGTCATTGCTAGAGTTACCAAAGTGATGGAAAGGATGGCTTCTGCTGATATTTTGTGTCTTGGCACGAAGTCTGTGCGGGAAAAATTTAGTGGCATAATTAGGCTTCAAGATGTAAGAGCCACCGAAATTGATAAAGTGGATATGCTTTCGTCTTTTCGCCCAGGTGACATTGTCAGAGCTCATGTTCTGTCCCTTGGAGACGCTAGGGCTTATTATCTGTCAACTGCAAAGAATGAATTGGGTGTTATTTCGGCACAGAGTGCAGCATCAGGTGAAACAATGGTCCCAATAAGCTGGACAGAGATGCAGTGCCCCAGGACAGGGCAAATCGAGCAAAGAAAGGTCGCTAAGGTCGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ECR1_N EXOSC1

Protein Analysis

197

Amino Acids

20.96

Weight (kDa)

9.45

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	74, 203
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	3 cut(s)	127, 130, 304
AclWI	GGATC	3 cut(s)	117, 130, 229
AcsI	RAATTY	1 cut(s)	311
AdeI	CACNNNGTG	1 cut(s)	488
AfiI	CCNNNNNNNGG	4 cut(s)	149, 218, 548, 549
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	61, 335
AjnI	CCWGG	4 cut(s)	28, 217, 388, 542
AluBI	AGCT	3 cut(s)	97, 407, 522
AluI	AGCT	3 cut(s)	97, 407, 522
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	160, 420
AlwI	GGATC	3 cut(s)	117, 130, 229
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	196, 511
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	109, 404, 512
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	74, 203
BanII	GRGCYC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	247, 256
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	4 cut(s)	30, 219, 390, 544
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	160, 420
BfaI	CTAG	2 cut(s)	237, 432
BisI	GCNGC	2 cut(s)	130, 492
BlsI	GCNGC	2 cut(s)	131, 493
Bme1390I	CCNGG	5 cut(s)	30, 150, 219, 390, 544
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	196, 511
BmiI	GGNNCC	4 cut(s)	76, 124, 205, 513
BmrFI	CCNGG	5 cut(s)	30, 150, 219, 390, 544
BmsI	GCATC	3 cut(s)	141, 503, 522
Bpu10I	CCTNAGC	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	6 cut(s)	28, 29, 199, 388, 421, 542
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 218, 548, 549
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	4 cut(s)	30, 219, 390, 544
BseDI	CCNNGG	6 cut(s)	28, 29, 199, 388, 421, 542
BseGI	GGATG	2 cut(s)	132, 267
BseLI	CCNNNNNNNGG	4 cut(s)	149, 218, 548, 549
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	2 cut(s)	74, 203
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	2 cut(s)	120, 150
BslFI	GGGAC	3 cut(s)	70, 403, 497
BslI	CCNNNNNNNGG	4 cut(s)	149, 218, 548, 549
BsmAI	GTCTC	2 cut(s)	160, 420
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	3 cut(s)	70, 403, 497
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	409, 542
Bsp143I	GATC	2 cut(s)	122, 221
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	3 cut(s)	127, 130, 304
BspANI	GGCC	1 cut(s)	197
BspLI	GGNNCC	4 cut(s)	76, 124, 205, 513
BspPI	GGATC	3 cut(s)	117, 130, 229
BspT107I	GGYRCC	2 cut(s)	74, 203
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	6 cut(s)	28, 29, 199, 388, 421, 542
BssMI	GATC	2 cut(s)	122, 221
BssT1I	CCWWGG	2 cut(s)	199, 421
Bst2UI	CCWGG	4 cut(s)	30, 219, 390, 544
Bst4CI	ACNGT	2 cut(s)	103, 175
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	67, 155
BstDEI	CTNAG	1 cut(s)	576
BstDSI	CCRYGG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	132, 267
BstKTI	GATC	2 cut(s)	125, 224
BstMAI	GTCTC	2 cut(s)	160, 420
BstMBI	GATC	2 cut(s)	122, 221
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 488, 559
BstNI	CCWGG	4 cut(s)	30, 219, 390, 544
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	5 cut(s)	28, 148, 217, 388, 542
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	122
BstXI	CCANNNNNNTGG	2 cut(s)	253, 522
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	132, 267
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	3 cut(s)	99, 171, 542
Cac8I	GCNNGC	2 cut(s)	67, 155
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	196, 511
CseI	GACGC	1 cut(s)	437
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	2 cut(s)	200, 410
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	2 cut(s)	124, 223
DpnII	GATC	2 cut(s)	122, 221
DraIII	CACNNNGTG	1 cut(s)	488
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	199, 421
Eco24I	GRGCYC	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	407
Eco91I	GGTNACC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	407
EcoO65I	GGTNACC	1 cut(s)	22
EcoRII	CCWGG	4 cut(s)	28, 217, 388, 542
EcoT14I	CCWWGG	2 cut(s)	199, 421
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	199, 421
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	2 cut(s)	203, 413
FaiI	YATR	4 cut(s)	201, 323, 371, 411
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	3 cut(s)	70, 403, 497
FatI	CATG	2 cut(s)	199, 409
FauI	CCCGC	2 cut(s)	134, 297
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	130, 492
FokI	GGATG	2 cut(s)	119, 274
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	130, 492
FspBI	CTAG	2 cut(s)	237, 432
GluI	GCNGC	2 cut(s)	130, 492
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	2 cut(s)	120, 150
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	203, 413
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HpaII	CCGG	2 cut(s)	120, 150
HphI	GGTGA	3 cut(s)	109, 404, 512
Hpy166II	GTNNAC	2 cut(s)	106, 450
Hpy188I	TCNGA	2 cut(s)	404, 584
Hpy188III	TCNNGA	2 cut(s)	212, 335
Hpy8I	GTNNAC	2 cut(s)	106, 450
HpyCH4III	ACNGT	2 cut(s)	103, 175
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	455, 491, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 488, 559
HpyF3I	CTNAG	1 cut(s)	576
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	203, 413
Kzo9I	GATC	2 cut(s)	122, 221
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	3 cut(s)	141, 503, 522
MaeI	CTAG	2 cut(s)	237, 432
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	5 cut(s)	22, 181, 188, 241, 392
MalI	GATC	2 cut(s)	124, 223
MboI	GATC	2 cut(s)	122, 221
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	409, 542
MluCI	AATT	4 cut(s)	311, 324, 354, 464
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	5 cut(s)	61, 65, 125, 156, 578
MspI	CCGG	2 cut(s)	120, 150
MspR9I	CCNGG	5 cut(s)	30, 150, 219, 390, 544
MvaI	CCWGG	4 cut(s)	30, 219, 390, 544
MwoI	GCNNNNNNNGC	3 cut(s)	203, 488, 559
NciI	CCSGG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	122, 221
NlaIII	CATG	2 cut(s)	203, 413
NlaIV	GGNNCC	4 cut(s)	76, 124, 205, 513
NmuCI	GTSAC	2 cut(s)	188, 392
PasI	CCCWGGG	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	131, 493
Ppu21I	YACGTR	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	4 cut(s)	28, 217, 388, 542
PspEI	GGTNACC	1 cut(s)	22
PspGI	CCWGG	4 cut(s)	28, 217, 388, 542
PspN4I	GGNNCC	4 cut(s)	76, 124, 205, 513
PspPI	GGNCC	2 cut(s)	196, 511
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	122
PsyI	GACNNNGTC	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	409
SatI	GCNGC	2 cut(s)	130, 492
Sau3AI	GATC	2 cut(s)	122, 221
Sau96I	GGNCC	2 cut(s)	196, 511
ScrFI	CCNGG	5 cut(s)	30, 150, 219, 390, 544
SduI	GDGCHC	2 cut(s)	409, 542
SetI	ASST	9 cut(s)	76, 84, 99, 394, 409, 502, 524, 573, 582
SfaNI	GCATC	3 cut(s)	141, 503, 522
SinI	GGWCC	1 cut(s)	511
Sse9I	AATT	4 cut(s)	311, 324, 354, 464
SsiI	CCGC	3 cut(s)	127, 130, 304
SspMI	CTAG	2 cut(s)	237, 432
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	5 cut(s)	28, 148, 217, 388, 542
StyI	CCWWGG	2 cut(s)	199, 421
TaaI	ACNGT	2 cut(s)	103, 175
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	558
TasI	AATT	4 cut(s)	311, 324, 354, 464
TauI	GCSGC	1 cut(s)	132
TscAI	CASTG	3 cut(s)	106, 178, 542
TseFI	GTSAC	2 cut(s)	188, 392
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	188, 392
TspDTI	ATGAA	1 cut(s)	477
TspRI	CASTG	3 cut(s)	106, 178, 542
Tth111I	GACNNNGTC	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	237, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.