Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387241.1

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 283

Gene Structure 283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

atggggaacgatacagagttggtgaccccaggtgaaaagcttggaagagcctccgaattcaaagcaggcagaggtgcctacgtgtcacctgataatctcaccgtctacgcttccctcactggcctccgccgcatcctatccccgcctcctgactcaccggaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

55

Amino Acids

5.85

Weight (kDa)

5.04

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	3 cut(s)	127, 130, 143
AcsI	RAATTY	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	5 cut(s)	34, 44, 78, 91, 147
AvaII	GGWCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	30
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	158
BsnI	GGCC	1 cut(s)	123
BspACI	CCGC	3 cut(s)	127, 130, 143
BspANI	GGCC	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	160
CviJI	RGCY	3 cut(s)	40, 50, 123
CviKI_1	RGCY	3 cut(s)	40, 50, 123
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	28
FauI	CCCGC	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	5 cut(s)	34, 44, 78, 91, 147
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	81
LguI	GCTCTTC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	15, 42, 51, 102, 105
LweI	GCATC	1 cut(s)	141
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	22, 84
MboII	GAAGA	1 cut(s)	57
MluCI	AATT	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	61, 65, 125, 134, 156
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	22, 84
PciSI	GCTCTTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	40
SatI	GCNGC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	5 cut(s)	34, 42, 76, 84, 91
SfaNI	GCATC	1 cut(s)	141
SgeI	CNNG	9 cut(s)	41, 42, 53, 78, 94, 101, 132, 154, 161
SinI	GGWCC	1 cut(s)	160
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	127, 130, 143
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	84
TasI	AATT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	132
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	22, 84
Tsp45I	GTSAC	2 cut(s)	22, 84
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.