Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Forward (+)

66746309 .. 66747227

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGACCTAGATGGAAAGGAAAGGATGCAAAAGCTAAAGCTCTTGCAGATCCCATGTCAAGTATAGTATTGCAGCTTCAGTCTTCTCTAGTCCAATCAGATGCCCAAGGATTCTTGTGTGGGTGCAATGTACTTCTTGAAGCAGGACCAAAGCAAACTGATCTCCTTCTTCGTGCCTGCTTTGGCGAACCCATAAAAAACTTGTCTGGTGAACCCATTATCAACAAAAACAATAAGCATTGGTTTTACTTTGGCATGGAAGAGGCATTCTTCCTATGCAATTCTCTAAAATGCCTCAAGATACTTGATGAAGGAGATAGCGAGGCAAATGATCGATTGAGGGTGTGGTCTGATGTCCGTGGCACCAAAAGGATGTGTAAAGTTATTAAGAAGGCATTGCTAGTTCATAGCATTGATAAAAATGGTCATGATGCTACCTCTCCATCATGTTTGGAAGGATACACAGTTACAGAGCACACAATTTCGAGATGGAGTCCGGAACAATGCCATGAGGATCACCCGAAAGATGATTGGGAACCAATTAGTAGTTCTGTGCCATTAATGCCTAGCGGAACCACATTAAGGTCTAAAGTGGCTTTAGCCCCACGGCAAGTTTCTCTCGATCAAATATTCAAGGCTTTGGTTATTTTCTTTTGGACAATCGTAGTCTTCGGTTTTGGATTTGCTTTAGGAAAATTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

235

Amino Acids

26.07

Weight (kDa)

8.09

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	2 cut(s)	44, 522
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	582
AgsI	TTSAA	2 cut(s)	140, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	3 cut(s)	35, 41, 76
AluI	AGCT	3 cut(s)	35, 41, 76
Alw21I	GWGCWC	1 cut(s)	477
AlwI	GGATC	2 cut(s)	44, 522
Aor13HI	TCCGGA	1 cut(s)	496
ApeKI	GCWGC	1 cut(s)	73
AseI	ATTAAT	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	5, 146
AsuHPI	GGTGA	2 cut(s)	221, 509
AvaII	GGWCC	2 cut(s)	5, 146
BanI	GGYRCC	1 cut(s)	362
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BbsI	GAAGAC	2 cut(s)	75, 661
Bbv12I	GWGCWC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	6, 451, 483
BceAI	ACGGC	1 cut(s)	623
BciVI	GTATCC	1 cut(s)	452
BfaI	CTAG	4 cut(s)	9, 89, 401, 567
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme18I	GGWCC	2 cut(s)	5, 146
BmgT120I	GGNCC	2 cut(s)	5, 146
BmiI	GGNNCC	4 cut(s)	6, 364, 537, 574
BmsI	GCATC	3 cut(s)	16, 91, 421
BpiI	GAAGAC	2 cut(s)	75, 661
BpuEI	CTTGAG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	106, 358, 605
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse3DI	GCAATG	2 cut(s)	133, 395
BseAI	TCCGGA	1 cut(s)	496
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	3 cut(s)	106, 358, 605
BseGI	GGATG	2 cut(s)	31, 378
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMI	GCAATG	2 cut(s)	133, 395
BseXI	GCAGC	1 cut(s)	85
BshNI	GGYRCC	1 cut(s)	362
BshVI	ATCGAT	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	582
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp13I	TCCGGA	1 cut(s)	496
Bsp143I	GATC	5 cut(s)	49, 160, 331, 514, 622
BspACI	CCGC	1 cut(s)	570
BspDI	ATCGAT	1 cut(s)	334
BspEI	TCCGGA	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	6, 364, 537, 574
BspPI	GGATC	2 cut(s)	44, 522
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	133, 395
BssECI	CCNNGG	3 cut(s)	106, 358, 605
BssMI	GATC	5 cut(s)	49, 160, 331, 514, 622
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	178
BstDSI	CCRYGG	2 cut(s)	358, 605
BstF5I	GGATG	2 cut(s)	31, 378
BstKTI	GATC	5 cut(s)	52, 163, 334, 517, 625
BstMBI	GATC	5 cut(s)	49, 160, 331, 514, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	2 cut(s)	75, 661
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	452
BsuTUI	ATCGAT	1 cut(s)	334
BtgI	CCRYGG	2 cut(s)	358, 605
BtsCI	GGATG	2 cut(s)	31, 378
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	5, 146
ClaI	ATCGAT	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	5 cut(s)	55, 256, 428, 447, 509
CviJI	RGCY	6 cut(s)	35, 41, 76, 596, 602, 638
CviKI_1	RGCY	6 cut(s)	35, 41, 76, 596, 602, 638
CviQI	GTAC	1 cut(s)	131
DpnI	GATC	5 cut(s)	51, 162, 333, 516, 624
DpnII	GATC	5 cut(s)	49, 160, 331, 514, 622
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	5, 146
Eco57I	CTGAAG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	5 cut(s)	58, 259, 431, 450, 512
FaiI	YATR	9 cut(s)	56, 65, 194, 257, 277, 408, 429, 448, 510
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	54, 255, 427, 446, 508
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	2 cut(s)	38, 385
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	4 cut(s)	9, 89, 401, 567
GluI	GCNGC	1 cut(s)	74
HapII	CCGG	1 cut(s)	497
Hin1II	CATG	5 cut(s)	58, 259, 431, 450, 512
HinfI	GANTC	2 cut(s)	111, 493
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	2 cut(s)	221, 509
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	100, 352
Hpy188III	TCNNGA	6 cut(s)	137, 298, 428, 486, 497, 620
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	4 cut(s)	176, 305, 385, 449
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	5 cut(s)	29, 47, 73, 126, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
Hsp92II	CATG	5 cut(s)	58, 259, 431, 450, 512
Kpn2I	TCCGGA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	49, 160, 331, 514, 622
LpnPI	CCDG	4 cut(s)	129, 190, 192, 510
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	3 cut(s)	16, 91, 421
MaeI	CTAG	4 cut(s)	9, 89, 401, 567
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	5 cut(s)	51, 162, 333, 516, 624
MboI	GATC	5 cut(s)	49, 160, 331, 514, 622
MboII	GAAGA	5 cut(s)	75, 161, 262, 272, 661
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	4 cut(s)	280, 480, 540, 695
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	6 cut(s)	256, 305, 316, 333, 448, 505
MroI	TCCGGA	1 cut(s)	496
MseI	TTAA	3 cut(s)	387, 560, 581
MspI	CCGG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	562
NdeII	GATC	5 cut(s)	49, 160, 331, 514, 622
NlaIII	CATG	5 cut(s)	58, 259, 431, 450, 512
NlaIV	GGNNCC	4 cut(s)	6, 364, 537, 574
PagI	TCATGA	1 cut(s)	427
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PpuMI	RGGWCCY	1 cut(s)	5
PshBI	ATTAAT	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	4 cut(s)	6, 364, 537, 574
PspPI	GGNCC	2 cut(s)	5, 146
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	387, 560, 581
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	5 cut(s)	49, 160, 331, 514, 622
Sau96I	GGNCC	2 cut(s)	5, 146
SchI	GAGTC	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	6 cut(s)	10, 37, 43, 78, 440, 587
SfaNI	GCATC	3 cut(s)	16, 91, 421
SinI	GGWCC	2 cut(s)	5, 146
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	280, 480, 540, 695
SsiI	CCGC	1 cut(s)	570
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	4 cut(s)	9, 89, 401, 567
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	334, 485, 621
TasI	AATT	4 cut(s)	280, 480, 540, 695
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	3 cut(s)	387, 560, 581
Tru9I	TTAA	3 cut(s)	387, 560, 581
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	324, 395
TspGWI	ACGGA	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	5, 146
VspI	ATTAAT	1 cut(s)	560
XspI	CTAG	4 cut(s)	9, 89, 401, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.