Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Forward (+)

66362320 .. 66363180

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTCAAGTATAGTATTGCAGCTTCAGTCTTCTCTAGTCCAATCAGATGCCCAAGGATTCTTGTGTGGGTGCAATGTACTTCTTGAAGCAGGACCAAAGCAAACTGATCTCCTTCTTCGTGCCTGCTTTGGCGAACCCATAAAAAACGTGTCTGGTGAACCCATTATCAACAAAAACAATAAGCATTGGTTTTACTTTGGCATGGAAGAGGCATTCTTCCTACGCAATTCTCTAAAATGCCTCAAGATACTTGATGGTTTAGATAACTGCCCAAAGAATGATCAAGAACTTTTCCAGTACATGAAATCTAAGAAAACAGCATTCCCCGATTCTTACAAGGCTTATTCTCATCTTCGGCTGATAAATTGGGTTGTGATGTACGATTCCAATTACTGTGCAGACTTTGTTGCCTACCGCCACCATCCCTCTCTGGTCCATTCTGAATTTGTTGTGATTCTGTTATCAGAAGGAGATAGCGAGGCAAATGATCGATTGAGGGTGTGGTCTGATGTCCGTGGCACCAAAAGGATGTGTAAAGTTATTAAGAAGGCATTGCTAGTTCTTAGCGTTGATAAAAATGGTCATGATGCTACCTCTCCATCATGTTTGGAAGGATACACAGTTACAGAGCACACAATTTCGAGATGGAGTCCTGAACAATGCCATGAGGATCACCCGAAAGATGATTGGGAACCAAGTAGTAGTTCTGTGCCATTAATGCCTAGCGGAACCACATTAAGGTCTAAAGTGGCTTTAGCCCCACGGCAAGTTTCTCTCGATCAAATATTCAAGGCTTTGGTTATTTTCTTTTGGACAATCGTAGTCTTCGGTTTTGGATTTGCTTTAGGAAAATTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

286

Amino Acids

32.35

Weight (kDa)

7.09

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_endo	PF01974	108 - 194	1e-11	tRNA intron endonuclease, catalytic C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	518
AciI	CCGC	2 cut(s)	415, 726
AclWI	GGATC	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	8
AfaI	GTAC	3 cut(s)	78, 299, 380
AfiI	CCNNNNNNNGG	1 cut(s)	738
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	86, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	688, 720
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	678
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	443
AseI	ATTAAT	1 cut(s)	716
AspS9I	GGNCC	2 cut(s)	92, 433
AsuHPI	GGTGA	2 cut(s)	167, 665
AvaII	GGWCC	2 cut(s)	92, 433
BanI	GGYRCC	1 cut(s)	518
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	21, 817
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	4 cut(s)	248, 429, 607, 639
BceAI	ACGGC	1 cut(s)	779
BciVI	GTATCC	1 cut(s)	608
BclI	TGATCA	1 cut(s)	280
BfaI	CTAG	3 cut(s)	35, 557, 723
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme18I	GGWCC	2 cut(s)	92, 433
BmgT120I	GGNCC	2 cut(s)	92, 433
BmiI	GGNNCC	3 cut(s)	520, 693, 730
BmsI	GCATC	2 cut(s)	37, 577
BpiI	GAAGAC	2 cut(s)	21, 817
BpuEI	CTTGAG	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	490
BsaJI	CCNNGG	3 cut(s)	52, 514, 761
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	79, 551
BseCI	ATCGAT	1 cut(s)	490
BseDI	CCNNGG	3 cut(s)	52, 514, 761
BseGI	GGATG	2 cut(s)	421, 534
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseMI	GCAATG	2 cut(s)	79, 551
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	518
BshVI	ATCGAT	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmI	GAATGC	2 cut(s)	212, 320
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	5 cut(s)	106, 280, 487, 670, 778
BspACI	CCGC	2 cut(s)	415, 726
BspDI	ATCGAT	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	520, 693, 730
BspPI	GGATC	1 cut(s)	678
BspT107I	GGYRCC	1 cut(s)	518
BsrDI	GCAATG	2 cut(s)	79, 551
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	52, 514, 761
BssMI	GATC	5 cut(s)	106, 280, 487, 670, 778
BssT1I	CCWWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	395, 622
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	309, 563
BstDSI	CCRYGG	2 cut(s)	514, 761
BstF5I	GGATG	2 cut(s)	421, 534
BstKTI	GATC	5 cut(s)	109, 283, 490, 673, 781
BstMBI	GATC	5 cut(s)	106, 280, 487, 670, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	718
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	21, 817
Bsu15I	ATCGAT	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	608
BsuTUI	ATCGAT	1 cut(s)	490
BtgI	CCRYGG	2 cut(s)	514, 761
BtsCI	GGATG	2 cut(s)	421, 534
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	92, 433
ClaI	ATCGAT	1 cut(s)	490
Csp6I	GTAC	3 cut(s)	77, 298, 379
CviAII	CATG	5 cut(s)	202, 301, 584, 603, 665
CviJI	RGCY	6 cut(s)	22, 341, 358, 752, 758, 794
CviKI_1	RGCY	6 cut(s)	22, 341, 358, 752, 758, 794
CviQI	GTAC	3 cut(s)	77, 298, 379
DdeI	CTNAG	2 cut(s)	309, 563
DpnI	GATC	5 cut(s)	108, 282, 489, 672, 780
DpnII	GATC	5 cut(s)	106, 280, 487, 670, 778
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	92, 433
Eco57I	CTGAAG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	5 cut(s)	205, 304, 587, 606, 668
FaiI	YATR	7 cut(s)	11, 140, 203, 302, 585, 604, 666
FatI	CATG	5 cut(s)	201, 300, 583, 602, 664
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	408, 541
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	3 cut(s)	35, 557, 723
GluI	GCNGC	1 cut(s)	20
Hin1II	CATG	5 cut(s)	205, 304, 587, 606, 668
HinfI	GANTC	5 cut(s)	57, 329, 383, 454, 649
HphI	GGTGA	2 cut(s)	167, 665
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	4 cut(s)	46, 442, 466, 508
Hpy188III	TCNNGA	7 cut(s)	83, 244, 284, 584, 642, 653, 776
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	4 cut(s)	122, 461, 541, 605
HpyCH4III	ACNGT	2 cut(s)	395, 622
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	19, 72, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	718
HpyF3I	CTNAG	2 cut(s)	309, 563
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	205, 304, 587, 606, 668
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	106, 280, 487, 670, 778
LpnPI	CCDG	6 cut(s)	75, 136, 138, 308, 416, 666
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	37, 577
MaeI	CTAG	3 cut(s)	35, 557, 723
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	5 cut(s)	108, 282, 489, 672, 780
MboI	GATC	5 cut(s)	106, 280, 487, 670, 778
MboII	GAAGA	6 cut(s)	21, 107, 208, 218, 344, 817
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	6 cut(s)	226, 364, 388, 443, 636, 851
MlyI	GAGTC	1 cut(s)	658
MnlI	CCTC	7 cut(s)	202, 251, 436, 472, 489, 604, 661
MseI	TTAA	3 cut(s)	543, 716, 737
Mva1269I	GAATGC	2 cut(s)	212, 320
MwoI	GCNNNNNNNGC	1 cut(s)	718
NdeII	GATC	5 cut(s)	106, 280, 487, 670, 778
NlaIII	CATG	5 cut(s)	205, 304, 587, 606, 668
NlaIV	GGNNCC	3 cut(s)	520, 693, 730
PagI	TCATGA	1 cut(s)	583
PctI	GAATGC	2 cut(s)	212, 320
PfeI	GAWTC	4 cut(s)	57, 329, 383, 454
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	657
PshBI	ATTAAT	1 cut(s)	716
PspN4I	GGNNCC	3 cut(s)	520, 693, 730
PspPI	GGNCC	2 cut(s)	92, 433
RsaI	GTAC	3 cut(s)	78, 299, 380
RsaNI	GTAC	3 cut(s)	77, 298, 379
SaqAI	TTAA	3 cut(s)	543, 716, 737
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	5 cut(s)	106, 280, 487, 670, 778
Sau96I	GGNCC	2 cut(s)	92, 433
SchI	GAGTC	1 cut(s)	658
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	4 cut(s)	24, 150, 596, 743
SfaNI	GCATC	2 cut(s)	37, 577
SinI	GGWCC	2 cut(s)	92, 433
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	6 cut(s)	226, 364, 388, 443, 636, 851
SsiI	CCGC	2 cut(s)	415, 726
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	3 cut(s)	35, 557, 723
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	395, 622
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	490, 641, 777
TasI	AATT	6 cut(s)	226, 364, 388, 443, 636, 851
TatI	WGTACW	2 cut(s)	76, 297
TfiI	GAWTC	4 cut(s)	57, 329, 383, 454
Tru1I	TTAA	3 cut(s)	543, 716, 737
Tru9I	TTAA	3 cut(s)	543, 716, 737
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	503
VpaK11BI	GGWCC	2 cut(s)	92, 433
VspI	ATTAAT	1 cut(s)	716
XapI	RAATTY	1 cut(s)	443
XspI	CTAG	3 cut(s)	35, 557, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.