Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Reverse (-)

839303 .. 841658

Gene Structure 2356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGGAACGATTCAGAGTTGGTGACCCCAGGCGAAAAGCTCGGAAGAGCCTCCGAGTTTAAAGCAGGCAGAGGCGCCTACGTGTCACCCGATAACCTCACCGTCTATGCTTCTCTCACTGGCCTCCGCCGCATCCTATCCCCGCCTCCTGACTCACCTGACCAGAGACCCGTTGTGGAAGTAACTGGTCACAAGGCCCATGGTGCTATTCCGGAGCCTGGATCTATTGTCATTGCTAGAGTTACAAAAGTGATGGCCAGAATGGCTTCTGCTGATATTATGTGTCTTGGCACAAAGTCTGTGCGGGAAAACTTTACTGGCATAATTAGGCTTCAAGATATCAGAGCAACTGAGATTGATAAAGTGGATATGCACCAGTCTTTTCGCCCTGGTGACATCGTCAGAGCTATTGTGCTATCCCTTGGAGATGCAAGAGCTTACTTTCTATCTACTGCAAAGAATGAGCTGGGAGTTATTTCTGCTCAGAGTGCAGCAGGTGTGCCAATGGTGGCAATAAGTTGGACTGAGATGCAATGCCCCATTACAGGGCAAATTGAGCTTAGAAAAGTTGCTAAGGTTGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

196

Amino Acids

20.81

Weight (kDa)

8.97

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECR1_N	PF14382	7 - 45	1.1e-09	Exosome complex exonuclease RRP4 N-terminal region
EXOSC1	PF10447	100 - 141	1.1e-12	Exosome component EXOSC1/CSL4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	4 cut(s)	127, 130, 143, 304
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	3 cut(s)	28, 217, 388
AluBI	AGCT	5 cut(s)	40, 407, 437, 466, 559
AluI	AGCT	5 cut(s)	40, 407, 437, 466, 559
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	3 cut(s)	121, 195, 255
ApeKI	GCWGC	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	5 cut(s)	34, 78, 91, 147, 404
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	3 cut(s)	30, 219, 390
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	130, 492
BlsI	GCNGC	2 cut(s)	131, 493
Bme1390I	CCNGG	3 cut(s)	30, 219, 390
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	76, 216
BmrFI	CCNGG	3 cut(s)	30, 219, 390
BmsI	GCATC	3 cut(s)	141, 418, 519
Bpu10I	CCTNAGC	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	4 cut(s)	28, 199, 388, 421
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 545, 546
Bse1I	ACTGG	4 cut(s)	124, 190, 322, 376
Bse3DI	GCAATG	2 cut(s)	231, 539
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	3 cut(s)	30, 219, 390
BseDI	CCNNGG	4 cut(s)	28, 199, 388, 421
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BseMI	GCAATG	2 cut(s)	231, 539
BseMII	CTCAG	3 cut(s)	342, 497, 516
BseNI	ACTGG	4 cut(s)	124, 190, 322, 376
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	123, 197, 257
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	3 cut(s)	123, 197, 257
Bso31I	GGTCTC	1 cut(s)	160
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	4 cut(s)	127, 130, 143, 304
BspANI	GGCC	3 cut(s)	123, 197, 257
BspCNI	CTCAG	3 cut(s)	343, 496, 517
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	76, 216
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	231, 539
BsrI	ACTGG	4 cut(s)	124, 190, 322, 376
BssECI	CCNNGG	4 cut(s)	28, 199, 388, 421
BssMI	GATC	1 cut(s)	221
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	199, 421
Bst2UI	CCWGG	3 cut(s)	30, 219, 390
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	5 cut(s)	351, 483, 525, 560, 573
BstDSI	CCRYGG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 203, 263, 488, 556
BstNI	CCWGG	3 cut(s)	30, 219, 390
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	28, 217, 388
BstV1I	GCAGC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	123, 197, 257
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	1 cut(s)	200
DdeI	CTNAG	5 cut(s)	351, 483, 525, 560, 573
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
DraI	TTTAAA	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	199, 421
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	22
EcoRII	CCWGG	3 cut(s)	28, 217, 388
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	199, 421
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	2 cut(s)	199, 421
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	108, 201, 281, 323, 371
FatI	CATG	1 cut(s)	199
FauI	CCCGC	2 cut(s)	150, 297
Fnu4HI	GCNGC	2 cut(s)	130, 492
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	130, 492
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	2 cut(s)	130, 492
GsaI	CCCAGC	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	123, 197, 257
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	11, 152
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	5 cut(s)	34, 78, 91, 147, 404
Hpy188I	TCNGA	6 cut(s)	16, 44, 55, 344, 404, 486
Hpy188III	TCNNGA	3 cut(s)	149, 212, 335
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	373, 431, 455, 491, 532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 203, 263, 488, 556
HpyF3I	CTNAG	5 cut(s)	351, 483, 525, 560, 573
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	221
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	3 cut(s)	141, 418, 519
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	6 cut(s)	22, 84, 181, 188, 241, 392
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	1 cut(s)	57
MflI	RGATCY	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	324, 552
MluNI	TGGCCA	1 cut(s)	257
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	500, 559
MnlI	CCTC	6 cut(s)	61, 65, 107, 134, 156, 575
Mox20I	TGGCCA	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	30, 219, 390
MvaI	CCWGG	3 cut(s)	30, 219, 390
MwoI	GCNNNNNNNGC	5 cut(s)	129, 203, 263, 488, 556
NarI	GGCGCC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	2 cut(s)	76, 216
NmuCI	GTSAC	4 cut(s)	22, 84, 188, 392
PaqCI	CACCTGC	1 cut(s)	485
PciSI	GCTCTTC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	131, 493
PleI	GAGTC	1 cut(s)	146
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	28, 217, 388
PspEI	GGTNACC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	3 cut(s)	28, 217, 388
PspN4I	GGNNCC	2 cut(s)	76, 216
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	130, 492
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	30, 219, 390
SfaNI	GCATC	3 cut(s)	141, 418, 519
SfoI	GGCGCC	1 cut(s)	76
Sse9I	AATT	2 cut(s)	324, 552
SsiI	CCGC	4 cut(s)	127, 130, 143, 304
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	3 cut(s)	28, 217, 388
StyI	CCWWGG	2 cut(s)	199, 421
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	84
TasI	AATT	2 cut(s)	324, 552
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	4 cut(s)	22, 84, 188, 392
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	4 cut(s)	22, 84, 188, 392
TspRI	CASTG	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.