Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Reverse (-)

11361706 .. 11363055

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1123700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCAAAGATAGTATTGAAGCTTCAGTCTTCTCTTATCCAATCAGATGCCCGAGGAATCTTATGCGGGAGCAGCGTACTTCTTGCTGCAGAAGAAGAACAAGCCCTTCTCTTCGGCCGTGCCTACTTTGGCCACCCGATTGTTAATGCCGATAAGGATAGGCAGTGGTTTCAGTTGGGCATGGAAGAGGCATTTTTCCTGTGCTATTCTTTAAAATGCCTCAAGATAGCGGGCGAAGACAAACGCCCGAAGGACGATCAAGAGCTTTGGCAGTGCATGAAGTCCAAAAAAGCGGGATTTCCTGTATTTTACAAGGCGTATTCTCACCTTCGAACGAAAAACTGGGTTGTGAGACCCGGACTTCAATATGGTGCGGACTTTGTTGCTTACCGTCACCATCCGAGTTTGGTCCATTCTGAATATGCTGTGCTTGTGTCATCAGAAGGAGATGCTGAAGCAAATGGGCGACTGAAGGTGTGGTCTGATGTTCATTGCACCTTAAGGCTTTGTTTAGGTGTTGTAAAAACATTGCTAGTTCTTACTATTAGTAAGAATGGGGATGATGATGCCTCTCCGTCATGTTTGGCAAACTACACGGTCGATGAGCTCACAGTTACAAGATGGAGTCCAGAACAAAGCCGCGAGGAAGATACAACGGATAATGAGGAATCACAAGCAACAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

229

Amino Acids

25.66

Weight (kDa)

5.58

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_endo_N	PF02778	18 - 90	9.4e-11	tRNA intron endonuclease, N-terminal domain
tRNA_int_endo	PF01974	104 - 187	1.9e-17	tRNA intron endonuclease, catalytic C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	642
AciI	CCGC	5 cut(s)	66, 230, 293, 374, 640
AcoI	YGGCCR	2 cut(s)	115, 130
AcuI	CTGAAG	3 cut(s)	8, 474, 491
AfaI	GTAC	1 cut(s)	78
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	19, 365
AluBI	AGCT	3 cut(s)	22, 265, 607
AluI	AGCT	3 cut(s)	22, 265, 607
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	2 cut(s)	115, 130
ApeKI	GCWGC	2 cut(s)	72, 86
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	317, 386
AsuII	TTCGAA	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	609
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	21, 243
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	73, 84
BccI	CCATC	2 cut(s)	405, 615
BceAI	ACGGC	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	499
BisI	GCNGC	3 cut(s)	73, 87, 640
BlsI	GCNGC	3 cut(s)	74, 88, 641
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	409
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	3 cut(s)	37, 439, 556
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	2 cut(s)	21, 243
Bpu14I	TTCGAA	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	2 cut(s)	490, 527
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	397, 565
BseMI	GCAATG	2 cut(s)	490, 527
BseNI	ACTGG	1 cut(s)	347
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	73, 84
Bsh1236I	CGCG	1 cut(s)	642
Bsh1285I	CGRYCG	2 cut(s)	118, 600
BshFI	GGCC	2 cut(s)	117, 132
BsiEI	CGRYCG	2 cut(s)	118, 600
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	117, 132
Bso31I	GGTCTC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	5 cut(s)	66, 230, 293, 374, 640
BspANI	GGCC	2 cut(s)	117, 132
BspFNI	CGCG	1 cut(s)	642
BspMAI	CTGCAG	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	331
BspTI	CTTAAG	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	490, 527
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	256
Bst4CI	ACNGT	3 cut(s)	392, 598, 613
Bst6I	CTCTTC	2 cut(s)	116, 180
BstAFI	CTTAAG	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	397, 565
BstFNI	CGCG	1 cut(s)	642
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	256
BstMCI	CGRYCG	2 cut(s)	118, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	73, 84
BstV2I	GAAGAC	2 cut(s)	21, 243
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	117, 132
BtsCI	GGATG	2 cut(s)	397, 565
BtsI	GCAGTG	2 cut(s)	170, 278
BtsIMutI	CAGTG	2 cut(s)	170, 278
Cac8I	GCNNGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	181, 277, 579
CviJI	RGCY	8 cut(s)	22, 104, 117, 132, 265, 505, 607, 639
CviKI_1	RGCY	8 cut(s)	22, 104, 117, 132, 265, 505, 607, 639
CviQI	GTAC	1 cut(s)	77
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraI	TTTAAA	1 cut(s)	213
EaeI	YGGCCR	2 cut(s)	115, 130
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	116, 180
EarI	CTCTTC	2 cut(s)	116, 180
Ecl136II	GAGCTC	1 cut(s)	607
EclXI	CGGCCG	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	409
Eco52I	CGGCCG	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	3 cut(s)	8, 474, 491
Eco88I	CYCGRG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	609
FaeI	CATG	3 cut(s)	184, 280, 582
FaiI	YATR	6 cut(s)	64, 182, 278, 369, 423, 580
FatI	CATG	3 cut(s)	180, 276, 578
FauI	CCCGC	3 cut(s)	59, 223, 286
Fnu4HI	GCNGC	3 cut(s)	73, 87, 640
FokI	GGATG	2 cut(s)	384, 572
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	3 cut(s)	73, 87, 640
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	3 cut(s)	73, 87, 640
HaeIII	GGCC	2 cut(s)	117, 132
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	3 cut(s)	184, 280, 582
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	57, 625, 668
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	317, 386
Hpy188I	TCNGA	5 cut(s)	46, 402, 418, 442, 484
Hpy188III	TCNNGA	3 cut(s)	223, 260, 629
HpyAV	CCTTC	5 cut(s)	116, 244, 338, 437, 466
HpyCH4III	ACNGT	3 cut(s)	392, 598, 613
HpyCH4V	TGCA	3 cut(s)	89, 276, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	184, 280, 582
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	5 cut(s)	212, 315, 328, 370, 642
Lsp1109I	GCAGC	2 cut(s)	73, 84
LweI	GCATC	3 cut(s)	37, 439, 556
MaeI	CTAG	1 cut(s)	533
MaeIII	GTNAC	2 cut(s)	392, 613
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	7 cut(s)	21, 103, 104, 107, 197, 248, 659
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	634
MnlI	CCTC	6 cut(s)	47, 181, 230, 580, 637, 658
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	3 cut(s)	144, 212, 500
Msp20I	TGGCCA	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	184, 280, 582
NmuCI	GTSAC	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	57, 668
PkrI	GCNGC	3 cut(s)	74, 88, 641
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
Psp124BI	GAGCTC	1 cut(s)	609
PspPI	GGNCC	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	144, 212, 500
SatI	GCNGC	3 cut(s)	73, 87, 640
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	609
SetI	ASST	7 cut(s)	24, 267, 330, 477, 500, 517, 609
SfaNI	GCATC	3 cut(s)	37, 439, 556
SfcI	CTRYAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	221, 499
SmoI	CTYRAG	2 cut(s)	221, 499
SsiI	CCGC	5 cut(s)	66, 230, 293, 374, 640
SspMI	CTAG	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	392, 598, 613
TaqI	TCGA	2 cut(s)	331, 600
TauI	GCSGC	1 cut(s)	642
TfiI	GAWTC	2 cut(s)	57, 668
Tru1I	TTAA	3 cut(s)	144, 212, 500
Tru9I	TTAA	3 cut(s)	144, 212, 500
TscAI	CASTG	2 cut(s)	170, 278
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	72, 86
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	293, 479
TspGWI	ACGGA	2 cut(s)	564, 671
TspRI	CASTG	2 cut(s)	170, 278
Vha464I	CTTAAG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	409
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.