Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Reverse (-)

6412208 .. 6414665

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G093000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGCGTAAATGGAAAGCGAAAGGCGCAGAAGCTAAAGCTCTTGCAGATCCCATGTCAAAGATAGTGTTGCAGCTTCAGTCTTCTCTAATCCAATCAGATGCTCGAGGAATCTTGTGTGGGTGTAGTGTACTTCTTGCTGCGGAAGAAGAACAAGCTCATCTCCTTGGCCGTGCCTACTTTGGCGACCGTGTTATTAACGCCGAGAAGGATAAGCGGTGGTTTCAGTTGGATATGGAAGAGGCATTTTTCCTATGCTATTCTCTCAAATGCCTCAAGATAGTGGGTGAAGATAAACGCCCAAAGGATGTTCAAGAGCTCTGGCAGTACATGAAATCCAAAAAAGCAGCTTTCCCTGATTTTTACAAGGCTTATTCTCATCTTCGACTGAAAAATTGGGTTGTAAGGCCCGGATTTAAATATGGTGCAGACTTTGTTGCCTACCGTCACCATCCGAATTTGGTCCATTCTGATTATGCTGTGCTTGTGTCATCAGAAGGAGATGGTGAAGCAAATGGGCGATTGAGGGTGTGGTCTGATATTCATGGCACCTTAAGGCTTTGTTTAGGTGTTGTAAAGACATTGCTAGTTCTTAGTATTAGTAAAAATGGTCATGATGCTGCCTCCCCATCATGTTTGGAGAACTATACGGTTGACGAGCGCACGGTTTCAAGATGGGTTCCAGAACAAGGCCGCGAGGATGATACATCAGTTGATGTTGAATCACAAAGATCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

247

Amino Acids

27.87

Weight (kDa)

8.14

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccII	CGCG	2 cut(s)	7, 696
AciI	CCGC	3 cut(s)	143, 217, 694
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	132, 329
AfiI	CCNNNNNNNGG	1 cut(s)	689
AflII	CTTAAG	1 cut(s)	553
AgsI	TTSAA	3 cut(s)	314, 672, 722
AluBI	AGCT	6 cut(s)	35, 41, 76, 158, 319, 350
AluI	AGCT	6 cut(s)	35, 41, 76, 158, 319, 350
Alw21I	GWGCWC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	3 cut(s)	169, 407, 691
ApeKI	GCWGC	4 cut(s)	73, 140, 347, 620
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	3 cut(s)	7, 29, 663
AspS9I	GGNCC	2 cut(s)	408, 463
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	3 cut(s)	299, 440, 518
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	463
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	4 cut(s)	85, 127, 359, 607
BccI	CCATC	4 cut(s)	459, 497, 637, 669
BceAI	ACGGC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	411
BfaI	CTAG	1 cut(s)	587
BfrI	CTTAAG	1 cut(s)	553
BisI	GCNGC	5 cut(s)	74, 141, 348, 621, 694
BlsI	GCNGC	5 cut(s)	75, 142, 349, 622, 695
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	408, 463
BmiI	GGNNCC	2 cut(s)	550, 681
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	91, 607
BpiI	GAAGAC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	313, 451, 706
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMI	GCAATG	1 cut(s)	581
BseXI	GCAGC	4 cut(s)	85, 127, 359, 607
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	2 cut(s)	7, 696
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	3 cut(s)	171, 409, 693
BshNI	GGYRCC	1 cut(s)	548
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	689
BsnI	GGCC	3 cut(s)	171, 409, 693
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	49, 731
BspACI	CCGC	3 cut(s)	143, 217, 694
BspANI	GGCC	3 cut(s)	171, 409, 693
BspFNI	CGCG	2 cut(s)	7, 696
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	550, 681
BspPI	GGATC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	548
BspTI	CTTAAG	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	49, 731
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	5 cut(s)	191, 446, 652, 667, 738
Bst6I	CTCTTC	1 cut(s)	234
BstAFI	CTTAAG	1 cut(s)	553
BstDEI	CTNAG	1 cut(s)	593
BstF5I	GGATG	3 cut(s)	313, 451, 706
BstFNI	CGCG	2 cut(s)	7, 696
BstHHI	GCGC	3 cut(s)	7, 29, 663
BstKTI	GATC	2 cut(s)	52, 734
BstMBI	GATC	2 cut(s)	49, 731
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	409
BstUI	CGCG	2 cut(s)	7, 696
BstV1I	GCAGC	4 cut(s)	85, 127, 359, 607
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	3 cut(s)	171, 409, 693
BtsCI	GGATG	3 cut(s)	313, 451, 706
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	3 cut(s)	7, 29, 663
Cfr13I	GGNCC	2 cut(s)	408, 463
Csp6I	GTAC	2 cut(s)	131, 328
CviAII	CATG	5 cut(s)	55, 331, 545, 614, 633
CviQI	GTAC	2 cut(s)	131, 328
DdeI	CTNAG	1 cut(s)	593
DpnI	GATC	2 cut(s)	51, 733
DpnII	GATC	2 cut(s)	49, 731
DraI	TTTAAA	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	5 cut(s)	58, 334, 548, 617, 636
FatI	CATG	5 cut(s)	54, 330, 544, 613, 632
Fnu4HI	GCNGC	5 cut(s)	74, 141, 348, 621, 694
FokI	GGATG	3 cut(s)	320, 438, 713
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	5 cut(s)	74, 141, 348, 621, 694
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	3 cut(s)	6, 28, 662
GluI	GCNGC	5 cut(s)	74, 141, 348, 621, 694
HaeIII	GGCC	3 cut(s)	171, 409, 693
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	3 cut(s)	7, 29, 663
Hin1II	CATG	5 cut(s)	58, 334, 548, 617, 636
Hin6I	GCGC	3 cut(s)	5, 27, 661
HinP1I	GCGC	3 cut(s)	5, 27, 661
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	2 cut(s)	111, 722
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	3 cut(s)	299, 440, 518
Hpy166II	GTNNAC	2 cut(s)	131, 655
Hpy188I	TCNGA	5 cut(s)	100, 456, 472, 496, 538
Hpy188III	TCNNGA	5 cut(s)	277, 314, 614, 672, 683
Hpy8I	GTNNAC	2 cut(s)	131, 655
HpyAV	CCTTC	2 cut(s)	202, 491
HpyCH4III	ACNGT	5 cut(s)	191, 446, 652, 667, 738
HpyCH4V	TGCA	3 cut(s)	47, 73, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	593
Hsp92II	CATG	5 cut(s)	58, 334, 548, 617, 636
HspAI	GCGC	3 cut(s)	5, 27, 661
Kzo9I	GATC	2 cut(s)	49, 731
LpnPI	CCDG	4 cut(s)	307, 369, 424, 696
Lsp1109I	GCAGC	4 cut(s)	85, 127, 359, 607
LweI	GCATC	2 cut(s)	91, 607
MaeI	CTAG	1 cut(s)	587
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	2 cut(s)	51, 733
MboI	GATC	2 cut(s)	49, 731
MboII	GAAGA	6 cut(s)	75, 158, 161, 251, 302, 374
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	2 cut(s)	394, 457
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	101, 235, 284, 519, 634, 691
MseI	TTAA	3 cut(s)	198, 417, 554
MspCI	CTTAAG	1 cut(s)	553
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	411
MvnI	CGCG	2 cut(s)	7, 696
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	2 cut(s)	49, 731
NlaIII	CATG	5 cut(s)	58, 334, 548, 617, 636
NlaIV	GGNNCC	2 cut(s)	550, 681
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	446
PaeR7I	CTCGAG	1 cut(s)	105
PagI	TCATGA	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	111, 722
PkrI	GCNGC	5 cut(s)	75, 142, 349, 622, 695
Psp124BI	GAGCTC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	550, 681
PspPI	GGNCC	2 cut(s)	408, 463
PspXI	VCTCGAGB	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	2 cut(s)	132, 329
RsaNI	GTAC	2 cut(s)	131, 328
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	198, 417, 554
SatI	GCNGC	5 cut(s)	74, 141, 348, 621, 694
Sau3AI	GATC	2 cut(s)	49, 731
Sau96I	GGNCC	2 cut(s)	408, 463
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	8 cut(s)	37, 43, 78, 160, 321, 352, 554, 571
SfaNI	GCATC	2 cut(s)	91, 607
Sfr274I	CTCGAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	105
SmiI	ATTTAAAT	1 cut(s)	418
SmlI	CTYRAG	3 cut(s)	105, 275, 553
SmoI	CTYRAG	3 cut(s)	105, 275, 553
Sse9I	AATT	2 cut(s)	394, 457
SsiI	CCGC	3 cut(s)	143, 217, 694
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	166
SwaI	ATTTAAAT	1 cut(s)	418
TaaI	ACNGT	5 cut(s)	191, 446, 652, 667, 738
TaqI	TCGA	2 cut(s)	106, 385
TasI	AATT	2 cut(s)	394, 457
TatI	WGTACW	2 cut(s)	130, 327
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	2 cut(s)	111, 722
Tru1I	TTAA	3 cut(s)	198, 417, 554
Tru9I	TTAA	3 cut(s)	198, 417, 554
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	4 cut(s)	73, 140, 347, 620
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	347, 533
Vha464I	CTTAAG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	105
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.