Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Reverse (-)

8887177 .. 8887863

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCAAAGATAGTATTGAAGCTTCAGTCTTCTCTTATCCAATCAGATGCCCGAGGAATCTTATGCGGGAGCAGCGTACTTCTTGCTGCAGAAGAAGAACAAGCCCTTCTCTTCGGTCGTGCCTACTTTGGCCACCCGATTGTTAATGCCGATAAGGATAGGCAGTGGTTTCAGTTGGGCATGGAAGAGGCATTTTTCCTGTGCTATTCTTTAAAGTGCCTCAAGATAGCAGGCGAAGATAAACGCCTGAAGGACGATCAAGAGCTTTGGCAGTGCATGAAGTCCAAAAAAGCTGGATTTCCTGTATTTTACAAGGCGTATTCTCACCTTCGAACCAAAAATTGGGTTGTGAGACCCGGACTTCAATATGGTGCGGACTTTGTTGCTTACCGTCACCATCCGAGTTTGGTCCATTCTGAATATGCTGTGCTTGTGTCATCAGAAGGAGATGCTGAAGCAAATGGGCGATTGAAGGTGTGGTCTGATGTTCATTGCACCTTAAGGCTTTGTTTAGGTGTTGTAAAGACATTGCTAGTTCTAACTATTAGTAAAAATGGTGACGATGATGATTCTCCGTCGTGTTTGGCAAACTACATGGTTGACGAGCGCACAGTTACAAGATGGAGTCCGGAACAAAGCCGCGAGGAAGATACATCAGATGATGTGGAATCACAAGCAAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

229

Amino Acids

25.8

Weight (kDa)

5.73

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_endo_N	PF02778	18 - 90	1.2e-10	tRNA intron endonuclease, N-terminal domain
tRNA_int_endo	PF01974	104 - 187	1.9e-17	tRNA intron endonuclease, catalytic C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccII	CGCG	1 cut(s)	642
AccIII	TCCGGA	1 cut(s)	628
AciI	CCGC	3 cut(s)	66, 374, 640
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	3 cut(s)	8, 269, 474
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	3 cut(s)	19, 365, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	3 cut(s)	22, 265, 293
AluI	AGCT	3 cut(s)	22, 265, 293
Alw26I	GTCTC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	51
Aor13HI	TCCGGA	1 cut(s)	628
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	72, 86
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	317, 386, 569
AsuII	TTCGAA	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	132
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	73, 84
BccI	CCATC	2 cut(s)	405, 615
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	499
BisI	GCNGC	3 cut(s)	73, 87, 640
BlsI	GCNGC	3 cut(s)	74, 88, 641
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	409
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	2 cut(s)	37, 439
BpiI	GAAGAC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse3DI	GCAATG	2 cut(s)	490, 527
BseAI	TCCGGA	1 cut(s)	628
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	2 cut(s)	490, 527
BseXI	GCAGC	2 cut(s)	73, 84
Bsh1236I	CGCG	1 cut(s)	642
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	357, 629
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	628
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	3 cut(s)	66, 374, 640
BspANI	GGCC	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	642
BspMAI	CTGCAG	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	331
BspTI	CTTAAG	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	490, 527
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	392, 613
Bst6I	CTCTTC	2 cut(s)	116, 180
BstAFI	CTTAAG	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	256
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	73, 84
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	2 cut(s)	170, 278
BtsIMutI	CAGTG	2 cut(s)	170, 278
Cac8I	GCNNGC	1 cut(s)	232
CfoI	GCGC	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	181, 277, 595
CviJI	RGCY	7 cut(s)	22, 104, 132, 265, 293, 505, 639
CviKI_1	RGCY	7 cut(s)	22, 104, 132, 265, 293, 505, 639
CviQI	GTAC	1 cut(s)	77
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraI	TTTAAA	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	116, 180
EarI	CTCTTC	2 cut(s)	116, 180
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	3 cut(s)	8, 269, 474
Eco88I	CYCGRG	1 cut(s)	51
FaeI	CATG	3 cut(s)	184, 280, 598
FaiI	YATR	6 cut(s)	64, 182, 278, 369, 423, 596
FatI	CATG	3 cut(s)	180, 276, 594
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	73, 87, 640
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	3 cut(s)	73, 87, 640
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	3 cut(s)	73, 87, 640
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	357, 629
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	3 cut(s)	184, 280, 598
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	57, 569, 625, 668
HpaII	CCGG	2 cut(s)	357, 629
HphI	GGTGA	3 cut(s)	317, 386, 569
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	6 cut(s)	46, 402, 418, 442, 484, 658
Hpy188III	TCNNGA	3 cut(s)	223, 260, 629
Hpy8I	GTNNAC	1 cut(s)	601
Hpy99I	CGWCG	1 cut(s)	580
HpyAV	CCTTC	5 cut(s)	116, 244, 338, 437, 466
HpyCH4III	ACNGT	2 cut(s)	392, 613
HpyCH4V	TGCA	3 cut(s)	89, 276, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	184, 280, 598
HspAI	GCGC	1 cut(s)	607
Kpn2I	TCCGGA	1 cut(s)	628
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	212, 216, 260, 279, 315, 370, 642
Lsp1109I	GCAGC	2 cut(s)	73, 84
LweI	GCATC	2 cut(s)	37, 439
MaeI	CTAG	1 cut(s)	533
MaeIII	GTNAC	3 cut(s)	392, 557, 613
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	7 cut(s)	21, 103, 104, 107, 197, 248, 659
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	340
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	634
MnlI	CCTC	4 cut(s)	47, 181, 230, 637
Mox20I	TGGCCA	1 cut(s)	132
MroI	TCCGGA	1 cut(s)	628
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	3 cut(s)	144, 212, 500
Msp20I	TGGCCA	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	2 cut(s)	357, 629
MspR9I	CCNGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	184, 280, 598
NmuCI	GTSAC	2 cut(s)	392, 557
NspV	TTCGAA	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	57, 569, 668
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	74, 88, 641
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	144, 212, 500
SatI	GCNGC	3 cut(s)	73, 87, 640
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	7 cut(s)	24, 267, 295, 330, 477, 500, 517
SfaNI	GCATC	2 cut(s)	37, 439
SfcI	CTRYAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	221, 499
SmoI	CTYRAG	2 cut(s)	221, 499
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	3 cut(s)	66, 374, 640
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	392, 613
TaqI	TCGA	1 cut(s)	331
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	642
TfiI	GAWTC	3 cut(s)	57, 569, 668
Tru1I	TTAA	3 cut(s)	144, 212, 500
Tru9I	TTAA	3 cut(s)	144, 212, 500
TscAI	CASTG	2 cut(s)	170, 278
TseFI	GTSAC	2 cut(s)	392, 557
TseI	GCWGC	2 cut(s)	72, 86
Tsp45I	GTSAC	2 cut(s)	392, 557
TspDTI	ATGAA	2 cut(s)	293, 479
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	2 cut(s)	170, 278
Van91I	CCANNNNNTGG	1 cut(s)	342
Vha464I	CTTAAG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	409
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.