FvH4_6g06180

Sucrose nonfermenting 4-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
3528713 .. 3534941
6229 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06180.t2

Sequence Viewer

Length: 1449 bp
ATGTTTGGTTCTGGCAGTACGGCGTACCAAAGCAGAGGACTTCCCGGACCCATTTTAATTCCGACCCGGTTTGTCTGGCCTTATGGGGGAAGGAGGGTGTTTCTCAGTGGCTCTTTTACAAGGTGGGAAGAACATATACCTATGTCACCTATGGAGGGGTGTCCTACTGTGTTTCAAGTTGTTTGGAACTTAACTCCAGGATATCACCAGTACAAGTTCTTTGTTGACGGAGAATGGCGACATAATGAGCACCAGCCTTTTGTAACTGGGAATTTTGGAACAGTGAATACTGTCTTTCTACAAGGGGAGCCAGATATAATTCCATCTAGTTTCAGTCCCGAGACTTCTGGCAGAGCCAATATGGATGTAGATAATGAAGTCTTTACACATATGGAAGTAGCTCCTAGGATCTCGGCGGCTGATTTGGAGGTCTCTCGTGATCGTATTGCAGTGTTTCTATCCACACATAAAGTTTACGAACTGCTTCCTGAGTCAGGCAAGGTCATCGCCTTGGATGTCGGTTTGGCAGTGAAGGAAGCATTCCATATCCTATATGAACAGGGAATACCTGGGGCTCCTCTATGGGATTTTGAGAAGGGACAAGTAGTAGGTGTTCTTAGCGCGTTGGATTTCATTTTAATTTTGAGAGAGCTTGGGAATCATGGGTCAAATATTACGGAGGAACAGCTGGAGACTCATACTATAGCAGCATGGAAAGCGGGGAAATTAAATTTGAACAGACAACTTGATGGAAATGGGAGATACTATCCGCCACAATTGATCTCTGCCGGGCCAGATGATTCTCTCAAAGAAGTTGCTGTCAGAATTCTTCAAAACAAGGTGGCCACAGTTCCAGTTGTTCATAAGACCTCAGAGGATGGTTCATTTCCACAGCTATTGCATATTGCCTCCCTTGCGTGTATACTAAAATGCATATGCAGGCATTTCAGATATTCTTCTAGCTCCCTGCCAATACTCCAACATCCTATATCAGAATTCCGTATCGGTACATGGGTTCCAAATATTGGGGAGTCAAATGGAAGGCTTCTGGCAATGTTGAGACCAAATTCATCTCTTGCTGATGCCCTGTCTTTGTTGATACAAGCTGAAGTTAGTTCAATACCCATAGTGGACGAGACTAACTCGTTGCTGGATGTTTATTCACGAAGTGATATTACGGCTTTGGCAAGAGATAGAGCTTATACACAGATTCGCCTTAATGAGTTAACTATCTATCAGACCTTGCAACTTAGGCAAAATGCAAATTCTCCTCATGGCCGTGTTCAGAAATGTCATATGTGTTTGCGATCCGATCCTCTGCATAAAGTGATGGAGCGGTTGACCGAACCAGGGGTCAGGAGACTTGTGATTGTGGAGGCTGGAAGTAAGCGTGTAGAGGGCATCATTTCATTGAGTGATGTGTTGAATTTCTTACTAGGTTTAGCTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

53.64

Weight (kDa)

6.25

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 14 - 43 1.5e-06 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1025
AccBSI CCGCTC 1 cut(s) 1336
AccI GTMKAC 1 cut(s) 922
AccII CGCG 1 cut(s) 623
AciI CCGC 4 cut(s) 416, 719, 770, 1336
AclWI GGATC 3 cut(s) 416, 1302, 1307
AcoI YGGCCR 2 cut(s) 843, 1276
AcsI RAATTY 7 cut(s) 271, 730, 825, 995, 1066, 1264, 1426
AcuI CTGAAG 1 cut(s) 1128
AdeI CACNNNGTG 1 cut(s) 1169
AfaI GTAC 4 cut(s) 19, 26, 212, 1009
AfiI CCNNNNNNNGG 5 cut(s) 86, 155, 494, 1025, 1350
AgsI TTSAA 5 cut(s) 176, 736, 833, 1119, 1426
AjnI CCWGG 3 cut(s) 196, 568, 1348
AluBI AGCT 8 cut(s) 401, 652, 688, 895, 963, 1106, 1199, 1445
AluI AGCT 8 cut(s) 401, 652, 688, 895, 963, 1106, 1199, 1445
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 6 cut(s) 335, 436, 686, 1054, 1130, 1354
AlwI GGATC 3 cut(s) 416, 1302, 1307
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 4 cut(s) 77, 791, 843, 1276
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 7 cut(s) 271, 730, 825, 995, 1066, 1264, 1426
ArsI GACNNNNNNTTYG 2 cut(s) 1338, 1370
Asp700I GAANNNNTTC 1 cut(s) 483
AspA2I CCTAGG 1 cut(s) 404
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 2 cut(s) 47, 791
AsuC2I CCSGG 3 cut(s) 45, 67, 790
AsuHPI GGTGA 2 cut(s) 138, 197
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 47
AvrII CCTAGG 1 cut(s) 404
BaeI ACNNNNGTAYC 2 cut(s) 999, 1032
BalI TGGCCA 1 cut(s) 845
BanII GRGCYC 1 cut(s) 577
BarI GAAGNNNNNNTAC 4 cut(s) 120, 152, 1159, 1191
BauI CACGAG 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 719
BccI CCATC 4 cut(s) 331, 743, 872, 1324
BceAI ACGGC 3 cut(s) 36, 1194, 1263
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 3 cut(s) 198, 570, 1350
BcnI CCSGG 3 cut(s) 45, 67, 790
BcoDI GTCTC 6 cut(s) 335, 436, 686, 1054, 1130, 1354
BfaI CTAG 4 cut(s) 327, 405, 960, 1436
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 2 cut(s) 417, 708
BlnI CCTAGG 1 cut(s) 404
BlsI GCNGC 2 cut(s) 418, 709
Bme1390I CCNGG 6 cut(s) 45, 67, 198, 570, 790, 1350
Bme18I GGWCC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 47, 791
BmiI GGNNCC 4 cut(s) 49, 309, 576, 1017
BmrFI CCNGG 6 cut(s) 45, 67, 198, 570, 790, 1350
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 1072, 1410
BmuI ACTGGG 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 1127, 1159
BpmI CTGGAG 2 cut(s) 180, 710
BpuMI CCSGG 3 cut(s) 45, 67, 790
BsaI GGTCTC 2 cut(s) 436, 1054
BsaJI CCNNGG 4 cut(s) 404, 510, 569, 1349
Bsc4I CCNNNNNNNGG 5 cut(s) 86, 155, 494, 1025, 1350
Bse1I ACTGG 3 cut(s) 208, 271, 854
Bse3DI GCAATG 1 cut(s) 1059
BseBI CCWGG 3 cut(s) 198, 570, 1350
BseDI CCNNGG 4 cut(s) 404, 510, 569, 1349
BseGI GGATG 5 cut(s) 370, 520, 883, 982, 1159
BseLI CCNNNNNNNGG 5 cut(s) 86, 155, 494, 1025, 1350
BseMI GCAATG 1 cut(s) 1059
BseMII CTCAG 3 cut(s) 118, 480, 885
BseNI ACTGG 3 cut(s) 208, 271, 854
BseRI GAGGAG 2 cut(s) 567, 1260
BseXI GCAGC 1 cut(s) 719
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 4 cut(s) 79, 793, 845, 1278
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 3 cut(s) 45, 67, 789
BslFI GGGAC 2 cut(s) 321, 612
BslI CCNNNNNNNGG 5 cut(s) 86, 155, 494, 1025, 1350
BsmAI GTCTC 6 cut(s) 335, 436, 686, 1054, 1130, 1354
BsmFI GGGAC 2 cut(s) 321, 612
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 4 cut(s) 79, 793, 845, 1278
Bso31I GGTCTC 2 cut(s) 436, 1054
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 252, 577
Bsp143I GATC 5 cut(s) 408, 439, 780, 1307, 1312
BspACI CCGC 4 cut(s) 416, 719, 770, 1336
BspANI GGCC 4 cut(s) 79, 793, 845, 1278
BspCNI CTCAG 3 cut(s) 117, 481, 884
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 4 cut(s) 49, 309, 576, 1017
BspPI GGATC 3 cut(s) 416, 1302, 1307
BspTNI GGTCTC 2 cut(s) 436, 1054
BsrBI CCGCTC 1 cut(s) 1336
BsrDI GCAATG 1 cut(s) 1059
BsrI ACTGG 3 cut(s) 208, 271, 854
BssECI CCNNGG 4 cut(s) 404, 510, 569, 1349
BssMI GATC 5 cut(s) 408, 439, 780, 1307, 1312
BssNAI GTATAC 1 cut(s) 923
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 404, 510
Bst1107I GTATAC 1 cut(s) 923
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 3 cut(s) 198, 570, 1350
Bst4CI ACNGT 4 cut(s) 169, 283, 292, 850
BstC8I GCNNGC 1 cut(s) 941
BstDEI CTNAG 5 cut(s) 104, 489, 617, 871, 1250
BstENI CCTNNNNNAGG 1 cut(s) 492
BstF5I GGATG 5 cut(s) 370, 520, 883, 982, 1159
BstFNI CGCG 1 cut(s) 623
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 5 cut(s) 411, 442, 783, 1310, 1315
BstMAI GTCTC 6 cut(s) 335, 436, 686, 1054, 1130, 1354
BstMBI GATC 5 cut(s) 408, 439, 780, 1307, 1312
BstMWI GCNNNNNNNGC 3 cut(s) 716, 914, 1252
BstNI CCWGG 3 cut(s) 198, 570, 1350
BstSCI CCNGG 6 cut(s) 43, 65, 196, 568, 788, 1348
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 1 cut(s) 719
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BstZ17I GTATAC 1 cut(s) 923
BsuRI GGCC 4 cut(s) 79, 793, 845, 1278
BtgZI GCGATG 1 cut(s) 490
BtsCI GGATG 5 cut(s) 370, 520, 883, 982, 1159
BtsI GCAGTG 2 cut(s) 456, 534
BtsIMutI CAGTG 4 cut(s) 112, 288, 456, 534
Cac8I GCNNGC 1 cut(s) 941
CfoI GCGC 1 cut(s) 623
Cfr13I GGNCC 2 cut(s) 47, 791
Csp6I GTAC 4 cut(s) 18, 25, 211, 1008
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviAII CATG 4 cut(s) 662, 711, 1011, 1274
CviQI GTAC 4 cut(s) 18, 25, 211, 1008
DdeI CTNAG 5 cut(s) 104, 489, 617, 871, 1250
DpnI GATC 5 cut(s) 410, 441, 782, 1309, 1314
DpnII GATC 5 cut(s) 408, 439, 780, 1307, 1312
DraIII CACNNNGTG 1 cut(s) 1169
EaeI YGGCCR 2 cut(s) 843, 1276
EciI GGCGGA 1 cut(s) 759
Eco130I CCWWGG 2 cut(s) 404, 510
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 2 cut(s) 436, 1054
Eco32I GATATC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 1128
Eco88I CYCGRG 1 cut(s) 338
EcoNI CCTNNNNNAGG 1 cut(s) 492
EcoRI GAATTC 2 cut(s) 825, 995
EcoRII CCWGG 3 cut(s) 196, 568, 1348
EcoRV GATATC 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 404, 510
EcoT22I ATGCAT 1 cut(s) 935
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 2 cut(s) 404, 510
FaeI CATG 4 cut(s) 665, 714, 1014, 1277
FaqI GGGAC 2 cut(s) 321, 612
FatI CATG 4 cut(s) 661, 710, 1010, 1273
FauI CCCGC 1 cut(s) 712
FauNDI CATATG 3 cut(s) 390, 935, 1296
FblI GTMKAC 1 cut(s) 922
Fnu4HI GCNGC 2 cut(s) 417, 708
FokI GGATG 5 cut(s) 377, 527, 890, 969, 1166
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 2 cut(s) 417, 708
FspBI CTAG 4 cut(s) 327, 405, 960, 1436
GlaI GCGC 1 cut(s) 622
GluI GCNGC 2 cut(s) 417, 708
GsuI CTGGAG 2 cut(s) 180, 710
HaeIII GGCC 4 cut(s) 79, 793, 845, 1278
HapII CCGG 3 cut(s) 45, 67, 789
HhaI GCGC 1 cut(s) 623
Hin1II CATG 4 cut(s) 665, 714, 1014, 1277
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HincII GTYRAC 3 cut(s) 226, 1227, 1341
HindII GTYRAC 3 cut(s) 226, 1227, 1341
HinfI GANTC 6 cut(s) 491, 658, 694, 800, 1031, 1210
HpaI GTTAAC 1 cut(s) 1227
HpaII CCGG 3 cut(s) 45, 67, 789
HphI GGTGA 2 cut(s) 138, 197
Hpy166II GTNNAC 6 cut(s) 226, 475, 923, 1132, 1227, 1341
Hpy188I TCNGA 8 cut(s) 63, 824, 874, 950, 994, 1239, 1287, 1312
Hpy188III TCNNGA 5 cut(s) 338, 437, 488, 1164, 1357
Hpy8I GTNNAC 6 cut(s) 226, 475, 923, 1132, 1227, 1341
HpyAV CCTTC 4 cut(s) 84, 526, 589, 1035
HpyCH4III ACNGT 4 cut(s) 169, 283, 292, 850
HpyCH4V TGCA 7 cut(s) 449, 901, 933, 939, 1246, 1262, 1321
HpyF10VI GCNNNNNNNGC 3 cut(s) 716, 914, 1252
HpyF3I CTNAG 5 cut(s) 104, 489, 617, 871, 1250
Hsp92II CATG 4 cut(s) 665, 714, 1014, 1277
HspAI GCGC 1 cut(s) 621
KspAI GTTAAC 1 cut(s) 1227
Kzo9I GATC 5 cut(s) 408, 439, 780, 1307, 1312
LmnI GCTCC 5 cut(s) 307, 406, 580, 968, 1333
Lsp1109I GCAGC 1 cut(s) 719
LweI GCATC 2 cut(s) 1072, 1410
MaeI CTAG 4 cut(s) 327, 405, 960, 1436
MaeIII GTNAC 2 cut(s) 144, 262
MalI GATC 5 cut(s) 410, 441, 782, 1309, 1314
MbiI CCGCTC 1 cut(s) 1336
MboI GATC 5 cut(s) 408, 439, 780, 1307, 1312
MboII GAAGA 3 cut(s) 140, 821, 948
MfeI CAATTG 1 cut(s) 776
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 252, 577
MlsI TGGCCA 1 cut(s) 845
MluNI TGGCCA 1 cut(s) 845
MlyI GAGTC 3 cut(s) 500, 688, 1040
MmeI TCCRAC 3 cut(s) 86, 606, 1003
Mox20I TGGCCA 1 cut(s) 845
Mph1103I ATGCAT 1 cut(s) 935
MroXI GAANNNNTTC 1 cut(s) 483
MscI TGGCCA 1 cut(s) 845
MseI TTAA 7 cut(s) 56, 191, 638, 728, 1218, 1226, 1447
MslI CAYNNNNRTG 1 cut(s) 1278
Msp20I TGGCCA 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 688
MspI CCGG 3 cut(s) 45, 67, 789
MspR9I CCNGG 6 cut(s) 45, 67, 198, 570, 790, 1350
MunI CAATTG 1 cut(s) 776
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 3 cut(s) 198, 570, 1350
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 716, 914, 1252
NciI CCSGG 3 cut(s) 45, 67, 790
NdeI CATATG 3 cut(s) 390, 935, 1296
NdeII GATC 5 cut(s) 408, 439, 780, 1307, 1312
NlaIII CATG 4 cut(s) 665, 714, 1014, 1277
NlaIV GGNNCC 4 cut(s) 49, 309, 576, 1017
NmeAIII GCCGAG 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 935
PctI GAATGC 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 658, 800, 1210
PflMI CCANNNNNTGG 1 cut(s) 1025
PfoI TCCNGGA 2 cut(s) 43, 196
PkrI GCNGC 2 cut(s) 418, 709
PleI GAGTC 3 cut(s) 499, 688, 1039
PpsI GAGTC 3 cut(s) 499, 688, 1039
Psp6I CCWGG 3 cut(s) 196, 568, 1348
PspGI CCWGG 3 cut(s) 196, 568, 1348
PspN4I GGNNCC 4 cut(s) 49, 309, 576, 1017
PspPI GGNCC 2 cut(s) 47, 791
PsrI GAACNNNNNNTAC 6 cut(s) 271, 303, 549, 581, 597, 629
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 688
RsaI GTAC 4 cut(s) 19, 26, 212, 1009
RsaNI GTAC 4 cut(s) 18, 25, 211, 1008
RseI CAYNNNNRTG 1 cut(s) 1278
SaqAI TTAA 7 cut(s) 56, 191, 638, 728, 1218, 1226, 1447
SatI GCNGC 2 cut(s) 417, 708
Sau3AI GATC 5 cut(s) 408, 439, 780, 1307, 1312
Sau96I GGNCC 2 cut(s) 47, 791
SchI GAGTC 3 cut(s) 500, 688, 1040
ScrFI CCNGG 6 cut(s) 45, 67, 198, 570, 790, 1350
SduI GDGCHC 2 cut(s) 252, 577
SfaNI GCATC 2 cut(s) 1072, 1410
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 1278
SsiI CCGC 4 cut(s) 416, 719, 770, 1336
SspI AATATT 2 cut(s) 673, 1024
SspMI CTAG 4 cut(s) 327, 405, 960, 1436
StyD4I CCNGG 6 cut(s) 43, 65, 196, 568, 788, 1348
StyI CCWWGG 2 cut(s) 404, 510
TaaI ACNGT 4 cut(s) 169, 283, 292, 850
TaqII GACCGA 1 cut(s) 1358
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 3 cut(s) 658, 800, 1210
Tru1I TTAA 7 cut(s) 56, 191, 638, 728, 1218, 1226, 1447
Tru9I TTAA 7 cut(s) 56, 191, 638, 728, 1218, 1226, 1447
TscAI CASTG 4 cut(s) 112, 288, 456, 534
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 1 cut(s) 707
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 7 cut(s) 390, 570, 622, 851, 873, 1059, 1398
TspGWI ACGGA 3 cut(s) 243, 692, 989
TspRI CASTG 4 cut(s) 112, 288, 456, 534
Van91I CCANNNNNTGG 1 cut(s) 1025
VpaK11BI GGWCC 1 cut(s) 47
XagI CCTNNNNNAGG 1 cut(s) 492
XapI RAATTY 7 cut(s) 271, 730, 825, 995, 1066, 1264, 1426
XmaJI CCTAGG 1 cut(s) 404
XmiI GTMKAC 1 cut(s) 922
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 4 cut(s) 327, 405, 960, 1436
Zsp2I ATGCAT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.