MD12G1217400.v1.1

Sucrose nonfermenting 4-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
29479540 .. 29485018
5479 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1217400.v1.1.491

Sequence Viewer

Length: 1443 bp
ATGTTTGGGTCTGGTTCGGGTGCTGCACATCAAAGCAGTAGACTTTCAGTACCAGTTTTAATTCCGACGCGGTTTGTCTGGCCTTATGGCGGAAGGAGTGTGTTTGTCAGTGGTTCTTTCACAAGGTGGTTGGAACAGATACCTATGGCTCCAGTGGAGGGGTGTCCAACTGTTTTTCAAGTTGTTTGGAATTTGACGCCCGGGTATCATCAGTACAAATTTTTTGTTGATGGCCAATGGCGACATGATGAGCATCAGCCTTTTGTTAATGCGAATGGTGGAGTAGTGAATACCATCTTTCTAGCTGGAGAAGATGTGGTTCCTACAAGTTTCAGTCCTGAGACTTCTGGTGGATCCAATATGGACTTAGATATGGTTCCTAGACAAGTAGAAGCAGTTCCTAGGTTCTCGCAAGCTGATCTCGATATCTCTCGTCATCGTATATCTATGTTCTTGTCCAGACATACTGCTTATGAGTTGCTTCCCGAGTCAGGCAAGGTAATTGCCTTGGATAATAGTTTACCTGTGAAGCAAGCATTCCATATCCTACATGAACAGGGATTACCTATGGCTCCTCTGTGGGATTTTGAGAAGGGCCAATTTGTTGGAGTTCTTAGCGCAATGGACTTCATCCTAATCTTGAGAGAGCTTGGGAATCATGGATCCAACTTGACTGAGGAAGAGCTTGAGACTCATACTGTAGCAGCATGGAAAGAGGGAAAAATAAATCTTAACAGACAACTTGATGACAATGGGAGATACTGTGCACCGCGTCTTGTCTCTGCTGGCCCTTATGATTCTCTCAAAGAAGTTGCTATGAAAATTTTGCAAAACAAGGTGGCAACGGTTCCAATTGTCCATTCAACTTCGCAGGATGGTTCATTTCCACAACTATTGCACCTTGCTTCCCTCTGCGGAATACTAAAATGCATATGCAGGCATTTTAGACATTCTTCTAGCTCCTTGCCCATACTCCTACATCCTATATCTGAGTTTCGTTTAGGCACATGGGTTCCAAATATTGGACAGTCAAATGGACGGCCATTGGCAATGTTGAGACCAAATTCATCTCTTGCTGATGCCTTTTCTTTGTTGATACAAGCTGACGTTAGTTCAATACCTATAGTGGATGGTAATGATTCATTGCTGGATATTTATTCGCGAAGTGATATCACTGCTTTGGCCAGAGATAAAGCTTATACACAGATTCGCCTTGATGAATTGAGCATCCATCAGGCATTGCTACTGGGACAAAGTGAAAATCCTCCTTACAGCTTCAATGGGCAGAGATGTCAGATGTGTTTGCAGTCAGATTCTTTGCATAAAGTGATGGAGCGCTTGGCTAATCCGGGGGTTAGGAGACTTGTGATTGTGGAGGCCGGCAGCAAGCGTGTAGAAGGGATTATTTCTTTGAGCGATGTATTCAGGTTCTTGCTAGGCTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

53.18

Weight (kDa)

6.28

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 21 - 99 7.7e-25 Glycogen recognition site of AMP-activated protein kinase
CBS PF00571 347 - 393 2.4e-06 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1022
AccI GTMKAC 1 cut(s) 40
AccII CGCG 3 cut(s) 70, 772, 1162
AciI CCGC 4 cut(s) 70, 90, 770, 915
AclWI GGATC 4 cut(s) 348, 361, 657, 670
AcoI YGGCCR 3 cut(s) 232, 1040, 1182
AcsI RAATTY 4 cut(s) 190, 218, 822, 1063
AcyI GRCGYC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 126
AfaI GTAC 2 cut(s) 51, 215
AfeI AGCGCT 1 cut(s) 1337
AfiI CCNNNNNNNGG 4 cut(s) 89, 158, 491, 1022
AgsI TTSAA 4 cut(s) 179, 864, 1116, 1279
AjuI GAANNNNNNNTTGG 2 cut(s) 844, 876
AluBI AGCT 8 cut(s) 305, 416, 649, 685, 960, 1103, 1196, 1275
AluI AGCT 8 cut(s) 305, 416, 649, 685, 960, 1103, 1196, 1275
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 5 cut(s) 335, 683, 784, 1051, 1354
Alw44I GTGCAC 1 cut(s) 765
AlwI GGATC 4 cut(s) 348, 361, 657, 670
Ama87I CYCGRG 2 cut(s) 200, 485
Aor51HI AGCGCT 1 cut(s) 1337
AoxI GGCC 7 cut(s) 80, 232, 595, 787, 1040, 1182, 1377
ApaLI GTGCAC 1 cut(s) 765
ApeKI GCWGC 3 cut(s) 23, 704, 1383
ApoI RAATTY 4 cut(s) 190, 218, 822, 1063
Asp700I GAANNNNTTC 1 cut(s) 396
AspA2I CCTAGG 1 cut(s) 401
AspLEI GCGC 2 cut(s) 620, 1338
AspS9I GGNCC 2 cut(s) 595, 788
AsuC2I CCSGG 3 cut(s) 201, 202, 1350
AvaI CYCGRG 2 cut(s) 200, 485
AvrII CCTAGG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 769
BalI TGGCCA 2 cut(s) 234, 1184
BamHI GGATCC 2 cut(s) 353, 662
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 3 cut(s) 10, 716, 1395
BccI CCATC 6 cut(s) 224, 302, 869, 1124, 1239, 1324
BceAI ACGGC 1 cut(s) 1055
BcnI CCSGG 3 cut(s) 201, 202, 1350
BcoDI GTCTC 5 cut(s) 335, 683, 784, 1051, 1354
BfaI CTAG 6 cut(s) 302, 381, 402, 957, 1436, 1441
BfmI CTRYAG 2 cut(s) 699, 1122
BfoI RGCGCY 1 cut(s) 1339
BisI GCNGC 3 cut(s) 24, 705, 1384
BlnI CCTAGG 1 cut(s) 401
BlsI GCNGC 3 cut(s) 25, 706, 1385
Bme1390I CCNGG 3 cut(s) 201, 202, 1350
BmeT110I CYCGRG 2 cut(s) 200, 485
BmgT120I GGNCC 2 cut(s) 595, 788
BmiI GGNNCC 8 cut(s) 150, 321, 355, 378, 573, 664, 849, 1014
BmrFI CCNGG 3 cut(s) 201, 202, 1350
BmrI ACTGGG 1 cut(s) 1256
BmsI GCATC 3 cut(s) 262, 1069, 1236
BmuI ACTGGG 1 cut(s) 1256
BpmI CTGGAG 2 cut(s) 135, 327
BpuEI CTTGAG 2 cut(s) 661, 707
BpuMI CCSGG 3 cut(s) 201, 202, 1350
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 1051
BsaJI CCNNGG 4 cut(s) 200, 401, 507, 1349
BsaXI ACNNNNNCTCC 4 cut(s) 300, 330, 748, 778
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 158, 491, 1022
Bse118I RCCGGY 1 cut(s) 1379
Bse1I ACTGG 3 cut(s) 53, 152, 1251
Bse3DI GCAATG 4 cut(s) 627, 1056, 1142, 1238
Bse8I GATNNNNATC 1 cut(s) 252
BseDI CCNNGG 4 cut(s) 200, 401, 507, 1349
BseGI GGATG 5 cut(s) 630, 880, 979, 1135, 1227
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 4 cut(s) 89, 158, 491, 1022
BseMI GCAATG 4 cut(s) 627, 1056, 1142, 1238
BseMII CTCAG 3 cut(s) 330, 666, 981
BseNI ACTGG 3 cut(s) 53, 152, 1251
BseRI GAGGAG 1 cut(s) 564
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 3 cut(s) 10, 716, 1395
BsgI GTGCAG 1 cut(s) 9
Bsh1236I CGCG 3 cut(s) 70, 772, 1162
BshFI GGCC 7 cut(s) 82, 234, 597, 789, 1042, 1184, 1379
BsiHKAI GWGCWC 1 cut(s) 769
BsiHKCI CYCGRG 2 cut(s) 200, 485
BsiSI CCGG 3 cut(s) 201, 1349, 1380
BslFI GGGAC 1 cut(s) 1263
BslI CCNNNNNNNGG 4 cut(s) 89, 158, 491, 1022
BsmAI GTCTC 5 cut(s) 335, 683, 784, 1051, 1354
BsmFI GGGAC 1 cut(s) 1263
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 7 cut(s) 82, 234, 597, 789, 1042, 1184, 1379
Bso31I GGTCTC 1 cut(s) 1051
BsoBI CYCGRG 2 cut(s) 200, 485
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 3 cut(s) 353, 418, 662
Bsp68I TCGCGA 1 cut(s) 1162
BspACI CCGC 4 cut(s) 70, 90, 770, 915
BspANI GGCC 7 cut(s) 82, 234, 597, 789, 1042, 1184, 1379
BspCNI CTCAG 3 cut(s) 331, 667, 982
BspFNI CGCG 3 cut(s) 70, 772, 1162
BspLI GGNNCC 8 cut(s) 150, 321, 355, 378, 573, 664, 849, 1014
BspPI GGATC 4 cut(s) 348, 361, 657, 670
BspQI GCTCTTC 1 cut(s) 675
BspTNI GGTCTC 1 cut(s) 1051
BsrDI GCAATG 4 cut(s) 627, 1056, 1142, 1238
BsrFI RCCGGY 1 cut(s) 1379
BsrI ACTGG 3 cut(s) 53, 152, 1251
BssAI RCCGGY 1 cut(s) 1379
BssECI CCNNGG 4 cut(s) 200, 401, 507, 1349
BssMI GATC 3 cut(s) 353, 418, 662
BssNI GRCGYC 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 401, 507
Bst4CI ACNGT 5 cut(s) 172, 700, 764, 847, 1029
Bst6I CTCTTC 1 cut(s) 675
BstACI GRCGYC 1 cut(s) 197
BstC8I GCNNGC 6 cut(s) 414, 534, 787, 938, 1381, 1388
BstDEI CTNAG 5 cut(s) 339, 367, 614, 675, 990
BstF5I GGATG 5 cut(s) 630, 880, 979, 1135, 1227
BstFNI CGCG 3 cut(s) 70, 772, 1162
BstH2I RGCGCY 1 cut(s) 1339
BstHHI GCGC 2 cut(s) 620, 1338
BstKTI GATC 3 cut(s) 356, 421, 665
BstMAI GTCTC 5 cut(s) 335, 683, 784, 1051, 1354
BstMBI GATC 3 cut(s) 353, 418, 662
BstSCI CCNGG 3 cut(s) 199, 200, 1348
BstSFI CTRYAG 2 cut(s) 699, 1122
BstSLI GKGCMC 1 cut(s) 769
BstUI CGCG 3 cut(s) 70, 772, 1162
BstV1I GCAGC 3 cut(s) 10, 716, 1395
BstX2I RGATCY 2 cut(s) 353, 662
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 2 cut(s) 353, 662
BsuRI GGCC 7 cut(s) 82, 234, 597, 789, 1042, 1184, 1379
BtgZI GCGATG 1 cut(s) 1431
BtsCI GGATG 5 cut(s) 630, 880, 979, 1135, 1227
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 3 cut(s) 115, 159, 1173
BtuMI TCGCGA 1 cut(s) 1162
Cac8I GCNNGC 6 cut(s) 414, 534, 787, 938, 1381, 1388
CfoI GCGC 2 cut(s) 620, 1338
Cfr10I RCCGGY 1 cut(s) 1379
Cfr13I GGNCC 2 cut(s) 595, 788
Cfr9I CCCGGG 1 cut(s) 200
CseI GACGC 3 cut(s) 76, 205, 761
Csp6I GTAC 2 cut(s) 50, 214
CspCI CAANNNNNGTGG 2 cut(s) 876, 911
CviAII CATG 5 cut(s) 245, 551, 659, 708, 1008
CviQI GTAC 2 cut(s) 50, 214
DdeI CTNAG 5 cut(s) 339, 367, 614, 675, 990
DpnI GATC 3 cut(s) 355, 420, 664
DpnII GATC 3 cut(s) 353, 418, 662
DraIII CACNNNGTG 1 cut(s) 126
EaeI YGGCCR 3 cut(s) 232, 1040, 1182
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
EciI GGCGGA 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 401, 507
Eco31I GGTCTC 1 cut(s) 1051
Eco32I GATATC 2 cut(s) 427, 1171
Eco47III AGCGCT 1 cut(s) 1337
Eco88I CYCGRG 2 cut(s) 200, 485
EcoRV GATATC 2 cut(s) 427, 1171
EcoT14I CCWWGG 2 cut(s) 401, 507
EcoT22I ATGCAT 1 cut(s) 932
ErhI CCWWGG 2 cut(s) 401, 507
FaeI CATG 5 cut(s) 248, 554, 662, 711, 1011
FaqI GGGAC 1 cut(s) 1263
FatI CATG 5 cut(s) 244, 550, 658, 707, 1007
FauNDI CATATG 1 cut(s) 932
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 24, 705, 1384
FokI GGATG 5 cut(s) 617, 887, 966, 1142, 1214
Fsp4HI GCNGC 3 cut(s) 24, 705, 1384
FspBI CTAG 6 cut(s) 302, 381, 402, 957, 1436, 1441
GlaI GCGC 2 cut(s) 619, 1337
GluI GCNGC 3 cut(s) 24, 705, 1384
GsuI CTGGAG 2 cut(s) 135, 327
HaeII RGCGCY 1 cut(s) 1339
HaeIII GGCC 7 cut(s) 82, 234, 597, 789, 1042, 1184, 1379
HapII CCGG 3 cut(s) 201, 1349, 1380
HgaI GACGC 3 cut(s) 76, 205, 761
HhaI GCGC 2 cut(s) 620, 1338
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 5 cut(s) 248, 554, 662, 711, 1011
Hin6I GCGC 2 cut(s) 618, 1336
HinP1I GCGC 2 cut(s) 618, 1336
HindIII AAGCTT 1 cut(s) 1194
HinfI GANTC 7 cut(s) 488, 655, 691, 797, 1139, 1207, 1313
HpaII CCGG 3 cut(s) 201, 1349, 1380
Hpy166II GTNNAC 3 cut(s) 41, 521, 767
Hpy188I TCNGA 4 cut(s) 66, 991, 1296, 1312
Hpy188III TCNNGA 6 cut(s) 338, 422, 459, 485, 640, 1161
Hpy8I GTNNAC 3 cut(s) 41, 521, 767
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 87, 586, 1391
HpyCH4III ACNGT 5 cut(s) 172, 700, 764, 847, 1029
HpyCH4IV ACGT 1 cut(s) 1107
HpyCH4V TGCA 8 cut(s) 26, 767, 829, 898, 930, 936, 1306, 1321
HpyF3I CTNAG 5 cut(s) 339, 367, 614, 675, 990
HpySE526I ACGT 1 cut(s) 1107
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 5 cut(s) 248, 554, 662, 711, 1011
HspAI GCGC 2 cut(s) 618, 1336
KroI GCCGGC 1 cut(s) 1379
KroNI GCCGGC 1 cut(s) 1381
Kzo9I GATC 3 cut(s) 353, 418, 662
LguI GCTCTTC 1 cut(s) 675
LmnI GCTCC 4 cut(s) 154, 577, 965, 1333
Lsp1109I GCAGC 3 cut(s) 10, 716, 1395
LweI GCATC 3 cut(s) 262, 1069, 1236
MaeI CTAG 6 cut(s) 302, 381, 402, 957, 1436, 1441
MaeII ACGT 1 cut(s) 1107
MalI GATC 3 cut(s) 355, 420, 664
MboI GATC 3 cut(s) 353, 418, 662
MboII GAAGA 3 cut(s) 323, 692, 945
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 2 cut(s) 353, 662
MhlI GDGCHC 1 cut(s) 769
MlsI TGGCCA 2 cut(s) 234, 1184
MluCI AATT 9 cut(s) 60, 190, 218, 501, 599, 822, 852, 1063, 1220
MluNI TGGCCA 2 cut(s) 234, 1184
MlyI GAGTC 2 cut(s) 497, 685
MmeI TCCRAC 5 cut(s) 89, 111, 191, 586, 690
MnlI CCTC 7 cut(s) 151, 585, 670, 709, 920, 1275, 1369
Mox20I TGGCCA 2 cut(s) 234, 1184
Mph1103I ATGCAT 1 cut(s) 932
MroNI GCCGGC 1 cut(s) 1379
MroXI GAANNNNTTC 1 cut(s) 396
MscI TGGCCA 2 cut(s) 234, 1184
MseI TTAA 3 cut(s) 59, 267, 732
Msp20I TGGCCA 2 cut(s) 234, 1184
MspI CCGG 3 cut(s) 201, 1349, 1380
MspR9I CCNGG 3 cut(s) 201, 202, 1350
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 1 cut(s) 536
MvnI CGCG 3 cut(s) 70, 772, 1162
NaeI GCCGGC 1 cut(s) 1381
NciI CCSGG 3 cut(s) 201, 202, 1350
NdeI CATATG 1 cut(s) 932
NdeII GATC 3 cut(s) 353, 418, 662
NgoMIV GCCGGC 1 cut(s) 1379
NlaIII CATG 5 cut(s) 248, 554, 662, 711, 1011
NlaIV GGNNCC 8 cut(s) 150, 321, 355, 378, 573, 664, 849, 1014
NruI TCGCGA 1 cut(s) 1162
NsiI ATGCAT 1 cut(s) 932
PciSI GCTCTTC 1 cut(s) 675
PctI GAATGC 1 cut(s) 536
PdiI GCCGGC 1 cut(s) 1381
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 5 cut(s) 655, 797, 1139, 1207, 1313
PflMI CCANNNNNTGG 1 cut(s) 1022
PkrI GCNGC 3 cut(s) 25, 706, 1385
PleI GAGTC 2 cut(s) 496, 685
PpsI GAGTC 2 cut(s) 496, 685
PspN4I GGNNCC 8 cut(s) 150, 321, 355, 378, 573, 664, 849, 1014
PspPI GGNCC 2 cut(s) 595, 788
PsrI GAACNNNNNNTAC 4 cut(s) 381, 413, 546, 578
PsuI RGATCY 2 cut(s) 353, 662
RruI TCGCGA 1 cut(s) 1162
RsaI GTAC 2 cut(s) 51, 215
RsaNI GTAC 2 cut(s) 50, 214
SapI GCTCTTC 1 cut(s) 675
SaqAI TTAA 3 cut(s) 59, 267, 732
SatI GCNGC 3 cut(s) 24, 705, 1384
Sau3AI GATC 3 cut(s) 353, 418, 662
Sau96I GGNCC 2 cut(s) 595, 788
SchI GAGTC 2 cut(s) 497, 685
ScrFI CCNGG 3 cut(s) 201, 202, 1350
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 3 cut(s) 262, 1069, 1236
SfcI CTRYAG 2 cut(s) 699, 1122
SmaI CCCGGG 1 cut(s) 202
SmlI CTYRAG 2 cut(s) 640, 686
SmoI CTYRAG 2 cut(s) 640, 686
Sse9I AATT 9 cut(s) 60, 190, 218, 501, 599, 822, 852, 1063, 1220
SsiI CCGC 4 cut(s) 70, 90, 770, 915
SspI AATATT 1 cut(s) 1021
SspMI CTAG 6 cut(s) 302, 381, 402, 957, 1436, 1441
StyD4I CCNGG 3 cut(s) 199, 200, 1348
StyI CCWWGG 2 cut(s) 401, 507
TaaI ACNGT 5 cut(s) 172, 700, 764, 847, 1029
TaiI ACGT 1 cut(s) 1110
TaqI TCGA 1 cut(s) 423
TasI AATT 9 cut(s) 60, 190, 218, 501, 599, 822, 852, 1063, 1220
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 5 cut(s) 655, 797, 1139, 1207, 1313
Tru1I TTAA 3 cut(s) 59, 267, 732
Tru9I TTAA 3 cut(s) 59, 267, 732
TscAI CASTG 3 cut(s) 115, 159, 1180
TseI GCWGC 3 cut(s) 23, 704, 1383
TspDTI ATGAA 7 cut(s) 567, 619, 833, 870, 1056, 1131, 1233
TspMI CCCGGG 1 cut(s) 200
TspRI CASTG 3 cut(s) 115, 159, 1180
Van91I CCANNNNNTGG 1 cut(s) 1022
VneI GTGCAC 1 cut(s) 765
XapI RAATTY 4 cut(s) 190, 218, 822, 1063
XmaI CCCGGG 1 cut(s) 200
XmaJI CCTAGG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 6 cut(s) 302, 381, 402, 957, 1436, 1441
Zsp2I ATGCAT 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.