MD04G1203600.v1.1

Sucrose nonfermenting 4-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
28972162 .. 28978044
5883 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1203600.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGTTAGGGTCTGGTTCGGGTGCTGCACCTGCACATCAAAGCAGTAGACTTTCCGTACCAGTTTTAATTCCGTATCGGTTTGTCTGGCCTTATGGAGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACAAGGTGGTTAGAACCTATACCTATGGCTCCAATGGAGGGGTGTCCAACTGTATTTCAAGTTGTTTGGAATTTGACGCCTGGATATCATCAGTACAAATTTTTTGTTGATGGCCAATGGCGACATAATGAGCATCAGCCTTTTGTTAATGCGAATGGTGGAACAGTGAATACCATCTTTCTAGCTGGAGAAGATATGGTTCCTACGAGTTTTAGTCCTGAGACTTCTGGTGGGTCCAACATGGACGTAGATATGATTCCTACAAATGTAGAAACAGTTCTTAGGTTCTCACAGGCTGATCTCGATATCTCTCGACATCGTATATCAATGTTCTTGTCCAGACATACGGCTTATGAGTTGCTTCCAGAGTCAGGCAAGGTCATTGCCTTGGATAATAGATTACCTGTGAAGCAAGCATTCCATATCCTACATGAACAGGGAGTACCTGTGGCTCCTCTGTGGGATTTTGAGAAGGGCCAGTTTGTTGGAGTCCTTAGTGCGATGGACTTCATCCTAATCTTGAGAGAGCTTGGGAATCATGGATCCAACTTGACCGAGGAAGAGCTTGAGACTCATACTGTAGCAGCATGGAAAGAGGGAAAAATAAATCTTAACAGACAACTTGATGGCAATGGGAGATACTATCCACCCCATCTTGTCTCTGCCGGCCCTTACGATTCTCTCAAAGAAGTAGCTTTGAAAATTTTGCAAAACAAGGTGGCTACAGTTCCAATTGTCCATTCAACTTCGCAGGATGGTTTATTTCCACAACTATTGCACCTTGCTTCCCTCTGCGGAATACTAAAATGCATATGCAGGCATTTTAGACATTCTTCTAGCTCCTTGCCCATACTTCAATGTCCTATATCTGAGTTTCGTTTAGGCACATGGGTTCCAAATATTGGAGAGTCAAATGGACGGCCATTGGCAATGTTAAGACCAAATTCATCTCTTGCTGATGTCTTCTCTCTGTTGATACAAGCTGACGTTAGTTCAATACCTATAGTGGATGGTAATGATTCATTGCTGGATATTTATTCACGAAGTGATATCACTGCTTTGGCCAGAGATAAAGCTTATACACAGATTCACCTTGATGAATTGAGCATCCATCAGGCGTTGCTACTGGGACAAGATGCGAATTCTCCTTACGGCTTCCTCAGCGGGCAGAGATGTCAGATGTGTTTGCGGTCAGATTCTTTGCATAAAGTGATGGAGCGCTTGGCTAATCCTGGGGTCAGGAGACTTGTGATCGTGGAGGCTGGCAGCAAGCGTGTAGAAGGGATTATTTCGTTGAGCGATGTATTCAGGTTCTTGCTAGGCTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

484

Amino Acids

53.47

Weight (kDa)

6.31

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 23 - 101 3.9e-23 Glycogen recognition site of AMP-activated protein kinase
CBS PF00571 349 - 395 4.5e-06 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 1028
AccI GTMKAC 1 cut(s) 46
AciI CCGC 3 cut(s) 921, 1290, 1315
AclWI GGATC 2 cut(s) 663, 676
AcoI YGGCCR 3 cut(s) 238, 1046, 1188
AcsI RAATTY 5 cut(s) 196, 224, 828, 1069, 1267
AcyI GRCGYC 1 cut(s) 203
AdeI CACNNNGTG 2 cut(s) 132, 1172
AfaI GTAC 3 cut(s) 57, 221, 570
AfeI AGCGCT 1 cut(s) 1346
AfiI CCNNNNNNNGG 4 cut(s) 95, 164, 497, 1028
AgsI TTSAA 5 cut(s) 185, 826, 870, 983, 1122
AjnI CCWGG 2 cut(s) 205, 1357
AjuI GAANNNNNNNTTGG 2 cut(s) 850, 882
AluBI AGCT 7 cut(s) 311, 655, 691, 821, 966, 1109, 1202
AluI AGCT 7 cut(s) 311, 655, 691, 821, 966, 1109, 1202
Alw26I GTCTC 4 cut(s) 341, 689, 790, 1363
AlwI GGATC 2 cut(s) 663, 676
Aor51HI AGCGCT 1 cut(s) 1346
AoxI GGCC 6 cut(s) 86, 238, 601, 793, 1046, 1188
ApeKI GCWGC 3 cut(s) 23, 710, 1392
ApoI RAATTY 5 cut(s) 196, 224, 828, 1069, 1267
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 1347
AspS9I GGNCC 3 cut(s) 360, 601, 794
AsuHPI GGTGA 1 cut(s) 1208
AvaII GGWCC 1 cut(s) 360
BalI TGGCCA 2 cut(s) 240, 1190
BamHI GGATCC 1 cut(s) 668
BbsI GAAGAC 1 cut(s) 1081
BbvCI CCTCAGC 1 cut(s) 1286
BbvI GCAGC 3 cut(s) 10, 722, 1404
BccI CCATC 9 cut(s) 230, 308, 622, 746, 786, 875, 1130, 1245, 1333
BceAI ACGGC 3 cut(s) 489, 1061, 1294
BciT130I CCWGG 2 cut(s) 207, 1359
BcoDI GTCTC 4 cut(s) 341, 689, 790, 1363
BfaI CTAG 4 cut(s) 308, 963, 1445, 1450
BfmI CTRYAG 3 cut(s) 705, 849, 1128
BfoI RGCGCY 1 cut(s) 1348
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 3 cut(s) 24, 711, 1393
BlsI GCNGC 3 cut(s) 25, 712, 1394
Bme1390I CCNGG 2 cut(s) 207, 1359
Bme18I GGWCC 1 cut(s) 360
BmgT120I GGNCC 3 cut(s) 360, 601, 794
BmiI GGNNCC 6 cut(s) 156, 327, 361, 579, 670, 1020
BmrFI CCNGG 2 cut(s) 207, 1359
BmrI ACTGGG 1 cut(s) 1262
BmsI GCATC 3 cut(s) 268, 1242, 1252
BmuI ACTGGG 1 cut(s) 1262
BpiI GAAGAC 1 cut(s) 1081
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 1286
BpuEI CTTGAG 2 cut(s) 667, 713
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 3 cut(s) 513, 681, 1358
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 164, 497, 1028
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 3 cut(s) 59, 604, 1257
Bse3DI GCAATG 4 cut(s) 507, 763, 1062, 1148
BseBI CCWGG 2 cut(s) 207, 1359
BseDI CCNNGG 3 cut(s) 513, 681, 1358
BseGI GGATG 4 cut(s) 636, 886, 1141, 1233
BseLI CCNNNNNNNGG 4 cut(s) 95, 164, 497, 1028
BseMI GCAATG 4 cut(s) 507, 763, 1062, 1148
BseMII CTCAG 4 cut(s) 127, 336, 987, 1300
BseNI ACTGG 3 cut(s) 59, 604, 1257
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 3 cut(s) 10, 722, 1404
BsgI GTGCAG 2 cut(s) 9, 15
BshFI GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
BsiSI CCGG 1 cut(s) 792
BslFI GGGAC 1 cut(s) 1269
BslI CCNNNNNNNGG 4 cut(s) 95, 164, 497, 1028
BsmAI GTCTC 4 cut(s) 341, 689, 790, 1363
BsmFI GGGAC 1 cut(s) 1269
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
Bsp143I GATC 3 cut(s) 424, 668, 1377
BspACI CCGC 3 cut(s) 921, 1290, 1315
BspANI GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
BspCNI CTCAG 4 cut(s) 126, 337, 988, 1299
BspLI GGNNCC 6 cut(s) 156, 327, 361, 579, 670, 1020
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 2 cut(s) 663, 676
BspQI GCTCTTC 1 cut(s) 681
BsrDI GCAATG 4 cut(s) 507, 763, 1062, 1148
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 3 cut(s) 59, 604, 1257
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 3 cut(s) 513, 681, 1358
BssMI GATC 3 cut(s) 424, 668, 1377
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 207, 1359
Bst4CI ACNGT 5 cut(s) 178, 292, 403, 706, 853
Bst6I CTCTTC 1 cut(s) 681
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 6 cut(s) 540, 793, 944, 1292, 1390, 1397
BstDEI CTNAG 6 cut(s) 113, 345, 407, 620, 996, 1286
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 4 cut(s) 636, 886, 1141, 1233
BstH2I RGCGCY 1 cut(s) 1348
BstHHI GCGC 1 cut(s) 1347
BstKTI GATC 3 cut(s) 427, 671, 1380
BstMAI GTCTC 4 cut(s) 341, 689, 790, 1363
BstMBI GATC 3 cut(s) 424, 668, 1377
BstMWI GCNNNNNNNGC 2 cut(s) 29, 1287
BstNI CCWGG 2 cut(s) 207, 1359
BstSCI CCNGG 2 cut(s) 205, 1357
BstSFI CTRYAG 3 cut(s) 705, 849, 1128
BstV1I GCAGC 3 cut(s) 10, 722, 1404
BstV2I GAAGAC 1 cut(s) 1081
BstX2I RGATCY 1 cut(s) 668
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 1 cut(s) 668
BsuRI GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
BtgZI GCGATG 2 cut(s) 641, 1440
BtsCI GGATG 4 cut(s) 636, 886, 1141, 1233
BtsI GCAGTG 1 cut(s) 1179
BtsIMutI CAGTG 3 cut(s) 121, 297, 1179
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 6 cut(s) 540, 793, 944, 1292, 1390, 1397
CfoI GCGC 1 cut(s) 1347
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 3 cut(s) 360, 601, 794
CseI GACGC 1 cut(s) 211
Csp6I GTAC 3 cut(s) 56, 220, 569
CspCI CAANNNNNGTGG 2 cut(s) 882, 917
CviAII CATG 5 cut(s) 367, 557, 665, 714, 1014
CviQI GTAC 3 cut(s) 56, 220, 569
DdeI CTNAG 6 cut(s) 113, 345, 407, 620, 996, 1286
DpnI GATC 3 cut(s) 426, 670, 1379
DpnII GATC 3 cut(s) 424, 668, 1377
DraIII CACNNNGTG 2 cut(s) 132, 1172
EaeI YGGCCR 3 cut(s) 238, 1046, 1188
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 513
Eco32I GATATC 3 cut(s) 212, 433, 1177
Eco47I GGWCC 1 cut(s) 360
Eco47III AGCGCT 1 cut(s) 1346
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 1267
EcoRII CCWGG 2 cut(s) 205, 1357
EcoRV GATATC 3 cut(s) 212, 433, 1177
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 938
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 5 cut(s) 370, 560, 668, 717, 1017
FaqI GGGAC 1 cut(s) 1269
FatI CATG 5 cut(s) 366, 556, 664, 713, 1013
FauI CCCGC 1 cut(s) 1283
FauNDI CATATG 1 cut(s) 938
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 24, 711, 1393
FokI GGATG 4 cut(s) 623, 893, 1148, 1220
Fsp4HI GCNGC 3 cut(s) 24, 711, 1393
FspBI CTAG 4 cut(s) 308, 963, 1445, 1450
GlaI GCGC 1 cut(s) 1346
GluI GCNGC 3 cut(s) 24, 711, 1393
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 1348
HaeIII GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
HapII CCGG 1 cut(s) 792
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 1347
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 5 cut(s) 370, 560, 668, 717, 1017
Hin6I GCGC 1 cut(s) 1345
HinP1I GCGC 1 cut(s) 1345
HindIII AAGCTT 1 cut(s) 1200
HpaII CCGG 1 cut(s) 792
HphI GGTGA 1 cut(s) 1208
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 3 cut(s) 997, 1305, 1321
Hpy188III TCNNGA 8 cut(s) 344, 428, 438, 465, 491, 646, 1167, 1366
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 93, 592, 1400
HpyCH4III ACNGT 5 cut(s) 178, 292, 403, 706, 853
HpyCH4IV ACGT 2 cut(s) 372, 1113
HpyCH4V TGCA 7 cut(s) 26, 32, 835, 904, 936, 942, 1330
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 1287
HpyF3I CTNAG 6 cut(s) 113, 345, 407, 620, 996, 1286
HpySE526I ACGT 2 cut(s) 372, 1113
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 5 cut(s) 370, 560, 668, 717, 1017
HspAI GCGC 1 cut(s) 1345
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
Kzo9I GATC 3 cut(s) 424, 668, 1377
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 4 cut(s) 160, 583, 971, 1342
Lsp1109I GCAGC 3 cut(s) 10, 722, 1404
LweI GCATC 3 cut(s) 268, 1242, 1252
MaeI CTAG 4 cut(s) 308, 963, 1445, 1450
MaeII ACGT 2 cut(s) 372, 1113
MalI GATC 3 cut(s) 426, 670, 1379
MboI GATC 3 cut(s) 424, 668, 1377
MboII GAAGA 4 cut(s) 329, 698, 951, 1081
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 1 cut(s) 668
MlsI TGGCCA 2 cut(s) 240, 1190
MluCI AATT 8 cut(s) 66, 196, 224, 828, 858, 1069, 1226, 1267
MluNI TGGCCA 2 cut(s) 240, 1190
MlyI GAGTC 4 cut(s) 503, 624, 691, 1043
MmeI TCCRAC 4 cut(s) 197, 387, 592, 696
MnlI CCTC 8 cut(s) 89, 157, 591, 676, 715, 926, 1295, 1378
Mox20I TGGCCA 2 cut(s) 240, 1190
Mph1103I ATGCAT 1 cut(s) 938
MroNI GCCGGC 1 cut(s) 791
MroXI GAANNNNTTC 1 cut(s) 402
MscI TGGCCA 2 cut(s) 240, 1190
MseI TTAA 4 cut(s) 65, 273, 738, 1061
MslI CAYNNNNRTG 1 cut(s) 1221
Msp20I TGGCCA 2 cut(s) 240, 1190
MspA1I CMGCKG 1 cut(s) 1290
MspI CCGG 1 cut(s) 792
MspR9I CCNGG 2 cut(s) 207, 1359
MunI CAATTG 1 cut(s) 858
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 2 cut(s) 207, 1359
MwoI GCNNNNNNNGC 2 cut(s) 29, 1287
NaeI GCCGGC 1 cut(s) 793
NdeI CATATG 1 cut(s) 938
NdeII GATC 3 cut(s) 424, 668, 1377
NgoMIV GCCGGC 1 cut(s) 791
NlaIII CATG 5 cut(s) 370, 560, 668, 717, 1017
NlaIV GGNNCC 6 cut(s) 156, 327, 361, 579, 670, 1020
NsiI ATGCAT 1 cut(s) 938
PaqCI CACCTGC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 681
PctI GAATGC 1 cut(s) 542
PdiI GCCGGC 1 cut(s) 793
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 6 cut(s) 382, 661, 803, 1145, 1213, 1322
PflMI CCANNNNNTGG 1 cut(s) 1028
PkrI GCNGC 3 cut(s) 25, 712, 1394
PleI GAGTC 4 cut(s) 502, 623, 691, 1042
PpsI GAGTC 4 cut(s) 502, 623, 691, 1042
Psp6I CCWGG 2 cut(s) 205, 1357
PspGI CCWGG 2 cut(s) 205, 1357
PspN4I GGNNCC 6 cut(s) 156, 327, 361, 579, 670, 1020
PspPI GGNCC 3 cut(s) 360, 601, 794
PsrI GAACNNNNNNTAC 6 cut(s) 280, 312, 387, 419, 552, 584
PsuI RGATCY 1 cut(s) 668
RsaI GTAC 3 cut(s) 57, 221, 570
RsaNI GTAC 3 cut(s) 56, 220, 569
RseI CAYNNNNRTG 1 cut(s) 1221
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 4 cut(s) 65, 273, 738, 1061
SatI GCNGC 3 cut(s) 24, 711, 1393
Sau3AI GATC 3 cut(s) 424, 668, 1377
Sau96I GGNCC 3 cut(s) 360, 601, 794
SchI GAGTC 4 cut(s) 503, 624, 691, 1043
ScrFI CCNGG 2 cut(s) 207, 1359
SfaNI GCATC 3 cut(s) 268, 1242, 1252
SfcI CTRYAG 3 cut(s) 705, 849, 1128
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 2 cut(s) 646, 692
SmoI CTYRAG 2 cut(s) 646, 692
Sse9I AATT 8 cut(s) 66, 196, 224, 828, 858, 1069, 1226, 1267
SsiI CCGC 3 cut(s) 921, 1290, 1315
SspI AATATT 1 cut(s) 1027
SspMI CTAG 4 cut(s) 308, 963, 1445, 1450
StyD4I CCNGG 2 cut(s) 205, 1357
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 5 cut(s) 178, 292, 403, 706, 853
TaiI ACGT 2 cut(s) 375, 1116
TaqI TCGA 2 cut(s) 429, 439
TaqII GACCGA 1 cut(s) 695
TasI AATT 8 cut(s) 66, 196, 224, 828, 858, 1069, 1226, 1267
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 6 cut(s) 382, 661, 803, 1145, 1213, 1322
Tru1I TTAA 4 cut(s) 65, 273, 738, 1061
Tru9I TTAA 4 cut(s) 65, 273, 738, 1061
TscAI CASTG 3 cut(s) 121, 297, 1186
TseI GCWGC 3 cut(s) 23, 710, 1392
TspDTI ATGAA 5 cut(s) 573, 625, 1062, 1137, 1239
TspGWI ACGGA 2 cut(s) 43, 60
TspRI CASTG 3 cut(s) 121, 297, 1186
Van91I CCANNNNNTGG 1 cut(s) 1028
VpaK11BI GGWCC 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 93
XapI RAATTY 5 cut(s) 196, 224, 828, 1069, 1267
XmiI GTMKAC 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 4 cut(s) 308, 963, 1445, 1450
Zsp2I ATGCAT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.