pycom04g18010

Sucrose nonfermenting 4-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
20171445 .. 20176082
4638 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18010.10

Sequence Viewer

Length: 1452 bp
ATGTTTGGGTCTGGTTCGGGTGCTGCACCTGCACATCAAAGCAGTAGACTTTCCGTACCAGTTTTAATTCCGTATCCGTTTGTCTGGCCTTATGGAGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACAAGGTGGTTAGAACATATACCTATGGCTCCAATGGAGGGGCACCCAACTGTATTTCAAGTTGTTTGGAATTTGACGCCCGGATATCATCAGTACAAATTTTTTGTTGATGGCCAATGGCGACATAATGAGCATCAGCCTTCTGTTAATGCGAATGGTGGAACAGTGAATACCATCTTTCTAGCTGGAGAAGATATCGTTCCTACAAGTTTCAGTCCTGAGACTTCTGGTGGGTCCAACATGGACGTAGATATGGTTCCTACAAATGTAGAAACAGTTCCTAGGTTCTCAGAGGCTGATCTCGATATCTCTCGACATCGTATATCAATGTTCTTGTCCAGACATACGGCTTATGAGTTGCTTCCAGAGTCAGGCAAGGTCATTGCCTTGGATAATAGTTTACCTGTGAAGCAAGCATTCCATATCCTACATGAACAGGGAGTACCTGTGGCTCCTCTGTGGGATTTTGAGAAGGGCCAGTTTGTTGGAGTACTTAGTGCTATGGACTTCATCCTAATCTTGAGAGAGCTTGGGAATCATGGATCCAACTTGACCGAGGAAGAGCTTGAGACTCATACTGTAGCAGCATGGAAAGAGGGAAAAATAAATCTTAACAGACAACTTGATGGCAATGGGAGATACTATCCACCCCATCTTGTCTCTGCTGGCCCTTACGATTCTCTCAAAGAAGTAGCTTTGAAAATTTTGCAAAACAAGGTGGCTACAGTTCCAATTGTCCATTCAACTTCGCAGAATGGTTCATCTCCTCAACTATTGCACCTTGCTTCCCTCTGCGGAATACTAAAATGCATATGCAGGCATTTTAGACATTCTTCTAGCTCCTTGCCCATACTCCAATGTCCTATATCTGAGTTTCGTTTAGGAACATGGGTTCCGAATATTGGAGAGTCAAATGGACGGCCATTGGCAATGTTAAGACCAAATTCATCTCTTGCTGATGTCTTCTCTTTGTTGATACAAGCTGACGTTAGTTCAATACCTATAGTGGATGGTAATGATTCATTGCTGGATATTTATTCACGAAGTGATATCACTGCTTTGGCCAGAGATAAAGCTTATACACAGATTCGCCTTGATGAATTGAGCATCCATCAGGCGTTGCTACTGGGACAAGATGCGAATTCTCCTTCCTGCTTCCTCAGTGGGCAGAGGTGTCAGATGTGTTTGCGGTCAGATTCTTTGCATAAAGTGATGGAGCGCTTGGCTAATCCTGGGGTTAGGAGACTTGTGATCGTGGAGGCTGGCAGCAAGCGTGTAGAAGGGATTATTTCGTTGAGCGATGTATTCAGGTTCTTGCTAGGCTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

484

Amino Acids

53.25

Weight (kDa)

6.25

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 46
AciI CCGC 2 cut(s) 921, 1315
AclWI GGATC 2 cut(s) 663, 676
AcoI YGGCCR 3 cut(s) 238, 1046, 1188
AcsI RAATTY 5 cut(s) 196, 224, 828, 1069, 1267
AcyI GRCGYC 1 cut(s) 203
AdeI CACNNNGTG 2 cut(s) 132, 1172
AfaI GTAC 4 cut(s) 57, 221, 570, 618
AfeI AGCGCT 1 cut(s) 1346
AfiI CCNNNNNNNGG 4 cut(s) 95, 164, 497, 1028
AgsI TTSAA 4 cut(s) 185, 826, 870, 1122
AjnI CCWGG 1 cut(s) 1357
AjuI GAANNNNNNNTTGG 2 cut(s) 850, 882
AloI GAACNNNNNNTCC 4 cut(s) 1002, 1003, 1034, 1035
AluBI AGCT 7 cut(s) 311, 655, 691, 821, 966, 1109, 1202
AluI AGCT 7 cut(s) 311, 655, 691, 821, 966, 1109, 1202
Alw26I GTCTC 4 cut(s) 341, 689, 790, 1363
AlwI GGATC 2 cut(s) 663, 676
AlwNI CAGNNNCTG 1 cut(s) 422
Aor51HI AGCGCT 1 cut(s) 1346
AoxI GGCC 6 cut(s) 86, 238, 601, 793, 1046, 1188
ApeKI GCWGC 3 cut(s) 23, 710, 1392
ApoI RAATTY 5 cut(s) 196, 224, 828, 1069, 1267
Asp700I GAANNNNTTC 1 cut(s) 402
AspA2I CCTAGG 1 cut(s) 407
AspLEI GCGC 1 cut(s) 1347
AspS9I GGNCC 3 cut(s) 360, 601, 794
AsuC2I CCSGG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 360
AvrII CCTAGG 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 171
BalI TGGCCA 2 cut(s) 240, 1190
BamHI GGATCC 1 cut(s) 668
BanI GGYRCC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 1081
BbvI GCAGC 3 cut(s) 10, 722, 1404
BccI CCATC 7 cut(s) 230, 308, 746, 786, 1130, 1245, 1333
BceAI ACGGC 2 cut(s) 489, 1061
BciT130I CCWGG 1 cut(s) 1359
BciVI GTATCC 1 cut(s) 84
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 4 cut(s) 341, 689, 790, 1363
BfaI CTAG 5 cut(s) 308, 408, 963, 1445, 1450
BfmI CTRYAG 3 cut(s) 705, 849, 1128
BfoI RGCGCY 1 cut(s) 1348
BfuAI ACCTGC 1 cut(s) 37
BfuI GTATCC 1 cut(s) 84
BisI GCNGC 3 cut(s) 24, 711, 1393
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 3 cut(s) 25, 712, 1394
BmcAI AGTACT 1 cut(s) 618
Bme1390I CCNGG 2 cut(s) 207, 1359
Bme18I GGWCC 1 cut(s) 360
BmgT120I GGNCC 3 cut(s) 360, 601, 794
BmiI GGNNCC 7 cut(s) 156, 170, 361, 384, 579, 670, 1020
BmrFI CCNGG 2 cut(s) 207, 1359
BmrI ACTGGG 1 cut(s) 1262
BmsI GCATC 3 cut(s) 268, 1242, 1252
BmuI ACTGGG 1 cut(s) 1262
BpiI GAAGAC 1 cut(s) 1081
BpmI CTGGAG 1 cut(s) 333
BpuEI CTTGAG 2 cut(s) 667, 713
BpuMI CCSGG 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 4 cut(s) 407, 513, 681, 1358
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 164, 497, 1028
Bse1I ACTGG 3 cut(s) 59, 604, 1257
Bse3DI GCAATG 4 cut(s) 507, 763, 1062, 1148
BseBI CCWGG 1 cut(s) 1359
BseDI CCNNGG 4 cut(s) 407, 513, 681, 1358
BseGI GGATG 3 cut(s) 636, 1141, 1233
BseLI CCNNNNNNNGG 4 cut(s) 95, 164, 497, 1028
BseMI GCAATG 4 cut(s) 507, 763, 1062, 1148
BseMII CTCAG 5 cut(s) 127, 336, 429, 987, 1300
BseNI ACTGG 3 cut(s) 59, 604, 1257
BseRI GAGGAG 2 cut(s) 570, 882
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 3 cut(s) 10, 722, 1404
BsgI GTGCAG 2 cut(s) 9, 15
BshFI GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
BshNI GGYRCC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 1269
BslI CCNNNNNNNGG 4 cut(s) 95, 164, 497, 1028
BsmAI GTCTC 4 cut(s) 341, 689, 790, 1363
BsmFI GGGAC 1 cut(s) 1269
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 3 cut(s) 424, 668, 1377
BspACI CCGC 2 cut(s) 921, 1315
BspANI GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
BspCNI CTCAG 5 cut(s) 126, 337, 428, 988, 1299
BspLI GGNNCC 7 cut(s) 156, 170, 361, 384, 579, 670, 1020
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 2 cut(s) 663, 676
BspQI GCTCTTC 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 168
BsrDI GCAATG 4 cut(s) 507, 763, 1062, 1148
BsrI ACTGG 3 cut(s) 59, 604, 1257
BssECI CCNNGG 4 cut(s) 407, 513, 681, 1358
BssMI GATC 3 cut(s) 424, 668, 1377
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 2 cut(s) 407, 513
Bst2UI CCWGG 1 cut(s) 1359
Bst4CI ACNGT 5 cut(s) 178, 292, 403, 706, 853
Bst6I CTCTTC 1 cut(s) 681
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 5 cut(s) 540, 793, 944, 1390, 1397
BstDEI CTNAG 6 cut(s) 113, 345, 415, 620, 996, 1286
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 3 cut(s) 636, 1141, 1233
BstH2I RGCGCY 1 cut(s) 1348
BstHHI GCGC 1 cut(s) 1347
BstKTI GATC 3 cut(s) 427, 671, 1380
BstMAI GTCTC 4 cut(s) 341, 689, 790, 1363
BstMBI GATC 3 cut(s) 424, 668, 1377
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 1359
BstSCI CCNGG 2 cut(s) 205, 1357
BstSFI CTRYAG 3 cut(s) 705, 849, 1128
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 10, 722, 1404
BstV2I GAAGAC 1 cut(s) 1081
BstX2I RGATCY 1 cut(s) 668
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 1 cut(s) 668
BsuI GTATCC 1 cut(s) 84
BsuRI GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
BtgZI GCGATG 1 cut(s) 1440
BtsCI GGATG 3 cut(s) 636, 1141, 1233
BtsI GCAGTG 1 cut(s) 1179
BtsIMutI CAGTG 4 cut(s) 121, 297, 1179, 1294
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 5 cut(s) 540, 793, 944, 1390, 1397
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 1347
Cfr13I GGNCC 3 cut(s) 360, 601, 794
CseI GACGC 1 cut(s) 211
Csp6I GTAC 4 cut(s) 56, 220, 569, 617
CviAII CATG 5 cut(s) 367, 557, 665, 714, 1014
CviQI GTAC 4 cut(s) 56, 220, 569, 617
DdeI CTNAG 6 cut(s) 113, 345, 415, 620, 996, 1286
DpnI GATC 3 cut(s) 426, 670, 1379
DpnII GATC 3 cut(s) 424, 668, 1377
DraIII CACNNNGTG 2 cut(s) 132, 1172
EaeI YGGCCR 3 cut(s) 238, 1046, 1188
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
Eco130I CCWWGG 2 cut(s) 407, 513
Eco32I GATATC 4 cut(s) 212, 322, 433, 1177
Eco47I GGWCC 1 cut(s) 360
Eco47III AGCGCT 1 cut(s) 1346
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 1267
EcoRII CCWGG 1 cut(s) 1357
EcoRV GATATC 4 cut(s) 212, 322, 433, 1177
EcoT14I CCWWGG 2 cut(s) 407, 513
EcoT22I ATGCAT 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 407, 513
FaeI CATG 5 cut(s) 370, 560, 668, 717, 1017
FaqI GGGAC 1 cut(s) 1269
FatI CATG 5 cut(s) 366, 556, 664, 713, 1013
FauNDI CATATG 1 cut(s) 938
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 24, 711, 1393
FokI GGATG 3 cut(s) 623, 1148, 1220
Fsp4HI GCNGC 3 cut(s) 24, 711, 1393
FspBI CTAG 5 cut(s) 308, 408, 963, 1445, 1450
GlaI GCGC 1 cut(s) 1346
GluI GCNGC 3 cut(s) 24, 711, 1393
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 1348
HaeIII GGCC 6 cut(s) 88, 240, 603, 795, 1048, 1190
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 1347
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 5 cut(s) 370, 560, 668, 717, 1017
Hin6I GCGC 1 cut(s) 1345
HinP1I GCGC 1 cut(s) 1345
HindIII AAGCTT 1 cut(s) 1200
HinfI GANTC 8 cut(s) 494, 661, 697, 803, 1034, 1145, 1213, 1322
HpaII CCGG 1 cut(s) 207
Hpy166II GTNNAC 2 cut(s) 47, 527
Hpy188I TCNGA 5 cut(s) 418, 997, 1023, 1305, 1321
Hpy188III TCNNGA 7 cut(s) 344, 428, 438, 465, 491, 646, 1167
Hpy8I GTNNAC 2 cut(s) 47, 527
HpyAV CCTTC 5 cut(s) 93, 276, 592, 1284, 1400
HpyCH4III ACNGT 5 cut(s) 178, 292, 403, 706, 853
HpyCH4IV ACGT 2 cut(s) 372, 1113
HpyCH4V TGCA 7 cut(s) 26, 32, 835, 904, 936, 942, 1330
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 6 cut(s) 113, 345, 415, 620, 996, 1286
HpySE526I ACGT 2 cut(s) 372, 1113
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 5 cut(s) 370, 560, 668, 717, 1017
HspAI GCGC 1 cut(s) 1345
Kzo9I GATC 3 cut(s) 424, 668, 1377
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 4 cut(s) 160, 583, 971, 1342
Lsp1109I GCAGC 3 cut(s) 10, 722, 1404
LweI GCATC 3 cut(s) 268, 1242, 1252
MaeI CTAG 5 cut(s) 308, 408, 963, 1445, 1450
MaeII ACGT 2 cut(s) 372, 1113
MalI GATC 3 cut(s) 426, 670, 1379
MboI GATC 3 cut(s) 424, 668, 1377
MboII GAAGA 4 cut(s) 329, 698, 951, 1081
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 1 cut(s) 668
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 2 cut(s) 240, 1190
MluCI AATT 8 cut(s) 66, 196, 224, 828, 858, 1069, 1226, 1267
MluNI TGGCCA 2 cut(s) 240, 1190
MlyI GAGTC 3 cut(s) 503, 691, 1043
MmeI TCCRAC 3 cut(s) 387, 592, 696
Mox20I TGGCCA 2 cut(s) 240, 1190
Mph1103I ATGCAT 1 cut(s) 938
MroXI GAANNNNTTC 1 cut(s) 402
MscI TGGCCA 2 cut(s) 240, 1190
MseI TTAA 4 cut(s) 65, 273, 738, 1061
Msp20I TGGCCA 2 cut(s) 240, 1190
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 207, 1359
MunI CAATTG 1 cut(s) 858
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 1 cut(s) 1359
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 938
NdeII GATC 3 cut(s) 424, 668, 1377
NlaIII CATG 5 cut(s) 370, 560, 668, 717, 1017
NlaIV GGNNCC 7 cut(s) 156, 170, 361, 384, 579, 670, 1020
NsiI ATGCAT 1 cut(s) 938
PaqCI CACCTGC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 681
PctI GAATGC 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 5 cut(s) 661, 803, 1145, 1213, 1322
PkrI GCNGC 3 cut(s) 25, 712, 1394
PleI GAGTC 3 cut(s) 502, 691, 1042
PpsI GAGTC 3 cut(s) 502, 691, 1042
Psp6I CCWGG 1 cut(s) 1357
PspGI CCWGG 1 cut(s) 1357
PspN4I GGNNCC 7 cut(s) 156, 170, 361, 384, 579, 670, 1020
PspPI GGNCC 3 cut(s) 360, 601, 794
PsrI GAACNNNNNNTAC 8 cut(s) 280, 312, 366, 387, 398, 419, 552, 584
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 668
RsaI GTAC 4 cut(s) 57, 221, 570, 618
RsaNI GTAC 4 cut(s) 56, 220, 569, 617
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 4 cut(s) 65, 273, 738, 1061
SatI GCNGC 3 cut(s) 24, 711, 1393
Sau3AI GATC 3 cut(s) 424, 668, 1377
Sau96I GGNCC 3 cut(s) 360, 601, 794
ScaI AGTACT 1 cut(s) 618
SchI GAGTC 3 cut(s) 503, 691, 1043
ScrFI CCNGG 2 cut(s) 207, 1359
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 3 cut(s) 268, 1242, 1252
SfcI CTRYAG 3 cut(s) 705, 849, 1128
SinI GGWCC 1 cut(s) 360
SmlI CTYRAG 2 cut(s) 646, 692
SmoI CTYRAG 2 cut(s) 646, 692
Sse9I AATT 8 cut(s) 66, 196, 224, 828, 858, 1069, 1226, 1267
SsiI CCGC 2 cut(s) 921, 1315
SspI AATATT 1 cut(s) 1027
SspMI CTAG 5 cut(s) 308, 408, 963, 1445, 1450
StyD4I CCNGG 2 cut(s) 205, 1357
StyI CCWWGG 2 cut(s) 407, 513
TaaI ACNGT 5 cut(s) 178, 292, 403, 706, 853
TaiI ACGT 2 cut(s) 375, 1116
TaqI TCGA 2 cut(s) 429, 439
TaqII GACCGA 1 cut(s) 695
TasI AATT 8 cut(s) 66, 196, 224, 828, 858, 1069, 1226, 1267
TatI WGTACW 2 cut(s) 219, 616
TfiI GAWTC 5 cut(s) 661, 803, 1145, 1213, 1322
Tru1I TTAA 4 cut(s) 65, 273, 738, 1061
Tru9I TTAA 4 cut(s) 65, 273, 738, 1061
TscAI CASTG 4 cut(s) 121, 297, 1186, 1294
TseI GCWGC 3 cut(s) 23, 710, 1392
TspDTI ATGAA 6 cut(s) 573, 625, 876, 1062, 1137, 1239
TspGWI ACGGA 3 cut(s) 43, 60, 66
TspRI CASTG 4 cut(s) 121, 297, 1186, 1294
VpaK11BI GGWCC 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 93
XapI RAATTY 5 cut(s) 196, 224, 828, 1069, 1267
XmaJI CCTAGG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 5 cut(s) 308, 408, 963, 1445, 1450
ZrmI AGTACT 1 cut(s) 618
Zsp2I ATGCAT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.