RchiOBHm_Chr3g0455191

Sucrose nonfermenting 4-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
5016580 .. 5022480
5901 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42214

Sequence Viewer

Length: 1458 bp
ATGTTTGGTTCTGGTCACGGTACGGCCTACCAGAGCAGTGGACTTCCAGGACCCATTTTAATTCCGACCCGGTTCGTCTGGCCTTATGGGGGAAGAAGGGTGTTCCTCAGTGGCTCTTTTACAAGGTGGTTAGAACATATACCTATGTCTCCAATGGAGGGGTGCCCAACTGCGTTTCAAGTTGTTTGGAACTTAACGCCTGGATATCACCAGTACAAGTTCTTGGTGGACGGAGAATGGCGACATAACGAGCAACTGCCTTTTGTCACTGGGAATTGTGGAATAGTGAATACCGTCTTTCTAACTGGGGAGCCAGATACAGTTCCTACTAGTTTCAGTCCCGAGACTTCTGGCAGATCCAATATGGATGTAGATAATGAAGTCTTTACGCGTATGGAAGTAGCTCCAAGGATCTCAGCGGCTGAATTGGAGGTCTCTCGGCAGCGTATATCAGTATTTCTATCCACACATACTGCTTACGAGTTGCTTCCTGAGTCAGGCAAGGTCATTGCCTTGGATGTCAATTTACCAGTGAAAGAAGCATTCCATATCCTACACGAACAGGGAGTACCTGTGGCTCCTCTCTGGGATTTTGAAAAGGGACAATTTGTAGGAGTTCTTAGCGCATTGGATTTCATCTTAATATTGAGAGAGCTTGGGAATCATGGGCCAAATTTGACGGGGGAAGAGCTGGAGACTCATACTATAGCAGCATGGAAAGAGGGAAAATTAAATTTGAACAGACAACTTGATGGAAATGGGAGATGCTATCCGCCACATTTGATCTCTGCCGGGCCTTATGATTCTCTCAAAGAAGTTGCTGTCAGAATTCTGCAAAACAAGGTGGCCACAGTTCCAATTCTTCATACTTCCTCAGAGGATGGTTCATTTCCACAGCTATTGCATCTTGCCTCCCTTTCGGGAATATTAAAATGCATATGCAGGCATTTCAGACATTCTTCTACCTCCTTGCCAATACTCCAACATCCTATTTCAGAATTCCGTATAGGTACATGGGTTCCAAATATTGGGGAGTCAAATGGAAGGCTGCTGGCTATGTTGAGACCAAATTCATCTCTTGCTGATGCCCTGTCTTTGTTGGTACAAGCTGAAGTTAGTTCAATACCCATAGTGGATGACAATGATTCATTGCTGGATGTTTATTCACGAAGTGATATTACTGCTTTGGCAAGAGACAAAGCTTATGCACAGATTCGCCTTGATCAATTGACTATCCATCAGACCTTGCAACTTGGGCAAAATGCAAATTCTCCTTATGGCTTCTTCAGTGGTCAGAGATGTCAGATGTGTTTGCGATCTGATCCTCTGCATAAAGTGATGGAGCGGTTGGCGAATCCAGGTGTGAGGAGACTTGTGATCGTGGAGGCCGGAAGCAAGCGTGTAGAGGGCATCATTTCATTGAGTGATGTGTTCAGGTTCTTGCTAGGTTTAGCTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

53.66

Weight (kDa)

6.19

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 21 - 101 4.2e-25 Glycogen recognition site of AMP-activated protein kinase
CBS PF00571 353 - 395 4.7e-06 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 1028
AccBSI CCGCTC 1 cut(s) 1345
AccII CGCG 1 cut(s) 391
AciI CCGC 3 cut(s) 419, 773, 1345
AclWI GGATC 3 cut(s) 351, 419, 1316
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 6 cut(s) 673, 733, 828, 998, 1069, 1267
AcuI CTGAAG 2 cut(s) 1131, 1270
AdeI CACNNNGTG 1 cut(s) 1172
AfaI GTAC 5 cut(s) 22, 215, 570, 1012, 1104
AfiI CCNNNNNNNGG 4 cut(s) 89, 158, 497, 1028
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 4 cut(s) 179, 596, 739, 1122
AhlI ACTAGT 1 cut(s) 329
AjnI CCWGG 3 cut(s) 46, 199, 1357
AluBI AGCT 7 cut(s) 404, 655, 691, 898, 1109, 1202, 1454
AluI AGCT 7 cut(s) 404, 655, 691, 898, 1109, 1202, 1454
Alw26I GTCTC 7 cut(s) 153, 338, 439, 689, 1057, 1188, 1363
AlwI GGATC 3 cut(s) 351, 419, 1316
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 6 cut(s) 24, 80, 668, 794, 846, 1386
ApeKI GCWGC 3 cut(s) 442, 710, 1048
ApoI RAATTY 6 cut(s) 673, 733, 828, 998, 1069, 1267
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 3 cut(s) 50, 668, 794
AsuC2I CCSGG 2 cut(s) 70, 793
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 167
BaeI ACNNNNGTAYC 2 cut(s) 1002, 1035
BalI TGGCCA 1 cut(s) 848
BanI GGYRCC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 1162, 1194
BbvI GCAGC 3 cut(s) 454, 722, 1035
BccI CCATC 4 cut(s) 746, 875, 1245, 1333
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 3 cut(s) 48, 201, 1359
BclI TGATCA 1 cut(s) 1222
BcnI CCSGG 2 cut(s) 70, 793
BcoDI GTCTC 7 cut(s) 153, 338, 439, 689, 1057, 1188, 1363
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 2 cut(s) 330, 1445
BfmI CTRYAG 1 cut(s) 705
BisI GCNGC 4 cut(s) 420, 443, 711, 1049
BlsI GCNGC 4 cut(s) 421, 444, 712, 1050
Bme1390I CCNGG 5 cut(s) 48, 70, 201, 793, 1359
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 3 cut(s) 50, 668, 794
BmiI GGNNCC 5 cut(s) 52, 164, 312, 579, 1020
BmrFI CCNGG 5 cut(s) 48, 70, 201, 793, 1359
BmrI ACTGGG 2 cut(s) 279, 315
BmsI GCATC 4 cut(s) 755, 913, 1075, 1419
BmuI ACTGGG 2 cut(s) 279, 315
BpmI CTGGAG 1 cut(s) 713
BpuMI CCSGG 2 cut(s) 70, 793
BsaI GGTCTC 2 cut(s) 439, 1057
BsaJI CCNNGG 2 cut(s) 407, 513
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 158, 497, 1028
Bse1I ACTGG 4 cut(s) 211, 274, 310, 530
Bse3DI GCAATG 2 cut(s) 507, 1148
BseBI CCWGG 3 cut(s) 48, 201, 1359
BseDI CCNNGG 2 cut(s) 407, 513
BseGI GGATG 6 cut(s) 373, 523, 886, 985, 1141, 1162
BseLI CCNNNNNNNGG 4 cut(s) 89, 158, 497, 1028
BseMI GCAATG 2 cut(s) 507, 1148
BseMII CTCAG 4 cut(s) 121, 429, 483, 888
BseNI ACTGG 4 cut(s) 211, 274, 310, 530
BseRI GAGGAG 2 cut(s) 570, 1381
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 3 cut(s) 454, 722, 1035
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 6 cut(s) 26, 82, 670, 796, 848, 1388
BshNI GGYRCC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 3 cut(s) 70, 792, 1389
BslFI GGGAC 2 cut(s) 324, 615
BslI CCNNNNNNNGG 4 cut(s) 89, 158, 497, 1028
BsmAI GTCTC 7 cut(s) 153, 338, 439, 689, 1057, 1188, 1363
BsmFI GGGAC 2 cut(s) 324, 615
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 6 cut(s) 26, 82, 670, 796, 848, 1388
Bso31I GGTCTC 2 cut(s) 439, 1057
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 7 cut(s) 356, 411, 783, 1222, 1316, 1321, 1377
BspACI CCGC 3 cut(s) 419, 773, 1345
BspANI GGCC 6 cut(s) 26, 82, 670, 796, 848, 1388
BspCNI CTCAG 4 cut(s) 120, 428, 484, 887
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 5 cut(s) 52, 164, 312, 579, 1020
BspPI GGATC 3 cut(s) 351, 419, 1316
BspQI GCTCTTC 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 162
BspTNI GGTCTC 2 cut(s) 439, 1057
BsrBI CCGCTC 1 cut(s) 1345
BsrDI GCAATG 2 cut(s) 507, 1148
BsrI ACTGG 4 cut(s) 211, 274, 310, 530
BssECI CCNNGG 2 cut(s) 407, 513
BssMI GATC 7 cut(s) 356, 411, 783, 1222, 1316, 1321, 1377
BssT1I CCWWGG 2 cut(s) 407, 513
Bst2UI CCWGG 3 cut(s) 48, 201, 1359
Bst4CI ACNGT 4 cut(s) 20, 295, 322, 853
Bst6I CTCTTC 1 cut(s) 681
BstC8I GCNNGC 3 cut(s) 944, 1053, 1397
BstDEI CTNAG 5 cut(s) 107, 415, 492, 620, 874
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 6 cut(s) 373, 523, 886, 985, 1141, 1162
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 7 cut(s) 359, 414, 786, 1225, 1319, 1324, 1380
BstMAI GTCTC 7 cut(s) 153, 338, 439, 689, 1057, 1188, 1363
BstMBI GATC 7 cut(s) 356, 411, 783, 1222, 1316, 1321, 1377
BstMWI GCNNNNNNNGC 1 cut(s) 1255
BstNI CCWGG 3 cut(s) 48, 201, 1359
BstSCI CCNGG 5 cut(s) 46, 68, 199, 791, 1357
BstSFI CTRYAG 1 cut(s) 705
BstSLI GKGCMC 1 cut(s) 167
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 454, 722, 1035
BstX2I RGATCY 2 cut(s) 356, 411
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 2 cut(s) 356, 411
BsuRI GGCC 6 cut(s) 26, 82, 670, 796, 848, 1388
BtsCI GGATG 6 cut(s) 373, 523, 886, 985, 1141, 1162
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 5 cut(s) 43, 115, 267, 537, 1294
Cac8I GCNNGC 3 cut(s) 944, 1053, 1397
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 3 cut(s) 50, 668, 794
Csp6I GTAC 5 cut(s) 21, 214, 569, 1011, 1103
CspCI CAANNNNNGTGG 2 cut(s) 882, 917
CviAII CATG 3 cut(s) 665, 714, 1014
CviQI GTAC 5 cut(s) 21, 214, 569, 1011, 1103
DdeI CTNAG 5 cut(s) 107, 415, 492, 620, 874
DpnI GATC 7 cut(s) 358, 413, 785, 1224, 1318, 1323, 1379
DpnII GATC 7 cut(s) 356, 411, 783, 1222, 1316, 1321, 1377
DraIII CACNNNGTG 1 cut(s) 1172
EaeI YGGCCR 1 cut(s) 846
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
EciI GGCGGA 1 cut(s) 762
Eco130I CCWWGG 2 cut(s) 407, 513
Eco31I GGTCTC 2 cut(s) 439, 1057
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 2 cut(s) 1131, 1270
Eco88I CYCGRG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 2 cut(s) 828, 998
EcoRII CCWGG 3 cut(s) 46, 199, 1357
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 407, 513
EcoT22I ATGCAT 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 407, 513
FaeI CATG 3 cut(s) 668, 717, 1017
FaqI GGGAC 2 cut(s) 324, 615
FatI CATG 3 cut(s) 664, 713, 1013
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 1 cut(s) 1222
Fnu4HI GCNGC 4 cut(s) 420, 443, 711, 1049
FokI GGATG 6 cut(s) 380, 530, 893, 972, 1148, 1169
Fsp4HI GCNGC 4 cut(s) 420, 443, 711, 1049
FspBI CTAG 2 cut(s) 330, 1445
GlaI GCGC 1 cut(s) 625
GluI GCNGC 4 cut(s) 420, 443, 711, 1049
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 6 cut(s) 26, 82, 670, 796, 848, 1388
HapII CCGG 3 cut(s) 70, 792, 1389
HhaI GCGC 1 cut(s) 626
Hin1II CATG 3 cut(s) 668, 717, 1017
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HindIII AAGCTT 1 cut(s) 1200
HinfI GANTC 8 cut(s) 494, 661, 697, 803, 1034, 1145, 1213, 1354
HpaII CCGG 3 cut(s) 70, 792, 1389
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 41, 229
Hpy188I TCNGA 9 cut(s) 66, 827, 877, 953, 997, 1242, 1296, 1305, 1321
Hpy188III TCNNGA 4 cut(s) 341, 491, 921, 1167
Hpy8I GTNNAC 2 cut(s) 41, 229
HpyAV CCTTC 2 cut(s) 90, 1038
HpyCH4III ACNGT 4 cut(s) 20, 295, 322, 853
HpyCH4V TGCA 8 cut(s) 835, 904, 936, 942, 1208, 1249, 1265, 1330
HpyF10VI GCNNNNNNNGC 1 cut(s) 1255
HpyF3I CTNAG 5 cut(s) 107, 415, 492, 620, 874
Hsp92II CATG 3 cut(s) 668, 717, 1017
HspAI GCGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 1222
Kzo9I GATC 7 cut(s) 356, 411, 783, 1222, 1316, 1321, 1377
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 4 cut(s) 310, 409, 583, 1342
Lsp1109I GCAGC 3 cut(s) 454, 722, 1035
LweI GCATC 4 cut(s) 755, 913, 1075, 1419
MaeI CTAG 2 cut(s) 330, 1445
MaeIII GTNAC 2 cut(s) 14, 265
MalI GATC 7 cut(s) 358, 413, 785, 1224, 1318, 1323, 1379
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 7 cut(s) 356, 411, 783, 1222, 1316, 1321, 1377
MboII GAAGA 5 cut(s) 105, 698, 854, 951, 1276
MfeI CAATTG 1 cut(s) 1226
MflI RGATCY 2 cut(s) 356, 411
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 848
MluI ACGCGT 1 cut(s) 389
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 3 cut(s) 503, 691, 1043
MmeI TCCRAC 2 cut(s) 89, 1006
Mox20I TGGCCA 1 cut(s) 848
Mph1103I ATGCAT 1 cut(s) 938
MscI TGGCCA 1 cut(s) 848
MseI TTAA 5 cut(s) 59, 194, 641, 731, 929
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 3 cut(s) 70, 792, 1389
MspR9I CCNGG 5 cut(s) 48, 70, 201, 793, 1359
MunI CAATTG 1 cut(s) 1226
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 3 cut(s) 48, 201, 1359
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 1255
NciI CCSGG 2 cut(s) 70, 793
NdeI CATATG 1 cut(s) 938
NdeII GATC 7 cut(s) 356, 411, 783, 1222, 1316, 1321, 1377
NlaIII CATG 3 cut(s) 668, 717, 1017
NlaIV GGNNCC 5 cut(s) 52, 164, 312, 579, 1020
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 2 cut(s) 14, 265
NsiI ATGCAT 1 cut(s) 938
PciSI GCTCTTC 1 cut(s) 681
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 5 cut(s) 661, 803, 1145, 1213, 1354
PflMI CCANNNNNTGG 1 cut(s) 1028
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 4 cut(s) 421, 444, 712, 1050
PleI GAGTC 3 cut(s) 502, 691, 1042
PpsI GAGTC 3 cut(s) 502, 691, 1042
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 3 cut(s) 46, 199, 1357
PspGI CCWGG 3 cut(s) 46, 199, 1357
PspN4I GGNNCC 5 cut(s) 52, 164, 312, 579, 1020
PspPI GGNCC 3 cut(s) 50, 668, 794
PspPPI RGGWCCY 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 552, 584
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 356, 411
RsaI GTAC 5 cut(s) 22, 215, 570, 1012, 1104
RsaNI GTAC 5 cut(s) 21, 214, 569, 1011, 1103
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 5 cut(s) 59, 194, 641, 731, 929
SatI GCNGC 4 cut(s) 420, 443, 711, 1049
Sau3AI GATC 7 cut(s) 356, 411, 783, 1222, 1316, 1321, 1377
Sau96I GGNCC 3 cut(s) 50, 668, 794
SchI GAGTC 3 cut(s) 503, 691, 1043
ScrFI CCNGG 5 cut(s) 48, 70, 201, 793, 1359
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 4 cut(s) 755, 913, 1075, 1419
SfcI CTRYAG 1 cut(s) 705
SinI GGWCC 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 329
SsiI CCGC 3 cut(s) 419, 773, 1345
SspI AATATT 3 cut(s) 645, 927, 1027
SspMI CTAG 2 cut(s) 330, 1445
StyD4I CCNGG 5 cut(s) 46, 68, 199, 791, 1357
StyI CCWWGG 2 cut(s) 407, 513
TaaI ACNGT 4 cut(s) 20, 295, 322, 853
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 5 cut(s) 661, 803, 1145, 1213, 1354
Tru1I TTAA 5 cut(s) 59, 194, 641, 731, 929
Tru9I TTAA 5 cut(s) 59, 194, 641, 731, 929
TscAI CASTG 5 cut(s) 43, 115, 274, 537, 1294
TseFI GTSAC 2 cut(s) 14, 265
TseI GCWGC 3 cut(s) 442, 710, 1048
Tsp45I GTSAC 2 cut(s) 14, 265
TspDTI ATGAA 7 cut(s) 393, 625, 854, 876, 1062, 1137, 1407
TspGWI ACGGA 2 cut(s) 246, 992
TspRI CASTG 5 cut(s) 43, 115, 274, 537, 1294
Van91I CCANNNNNTGG 1 cut(s) 1028
VpaK11BI GGWCC 1 cut(s) 50
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 6 cut(s) 673, 733, 828, 998, 1069, 1267
XspI CTAG 2 cut(s) 330, 1445
Zsp2I ATGCAT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.