Rorug04G0174000

Sucrose nonfermenting 4-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
30616505 .. 30618161
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0174000.1

Sequence Viewer

Length: 1335 bp
ATGGAAGTCCAGGAGTCACAGGATCGGAAGCCGAGCTCCGACTCCATCTACCGCCTATTCATGCCGACCATGTGCACCTGCAACACCGCCCTGAACCTTCTGTTCAATTGCCTCACCACTTGCGACGAGGCCGAAGTCGAGGCTCGCCTCCTCGAGAAAGACGCCTTCGCCGCCACCAGTATGATTATCGGAACGATCTACTCCGAGGAGATCAGCGAGCGCATAGTGGAGGTCCTCAAGGCTAAGAATACCGGCTCTTCTGCTGCTGGAAACCGCGCCCTGTTGTTGCCGGACGTTGGCAGGCTCAAGCCCATCTTGGACCATATTATCAAGGACCTCAGCAGTCCCTTCTCTCCCTTTAGAGACTTCGGCACCTTCCCCACCGACGAGGCCAAAGCTCTGGCTCCTCTCATCGAGCAAGAGGCCTTCGTCGCCGCCATGATCAAGATCCGTCAGATCTACATCCATGAGGTCTGCAAGCGCATGGTGGAGATCAAACACAAGAACGCCGCTGCTTCTGCTGCTGGAAATGTCGCGTCGGAGACCGCCGCCGGTGGTGTGCCTGAGGCAATTGAAAGTCAGGTAAAATCCATGGAATTAGCAGAATCCACGGTCTTTCTTCACGGTCATAAGAAGAAAGATCGTGAAGCAACAACAAACATTTCTCTCTCACATCTGAATCCTCCAACATTTTCTCATAGAAATTCAAGCTCAACCATGGAAGTCCAGGATTCACAGGATCGGAAGCCGAGCTCCGACTCTATCATCCACAGCCTATTCTTGCCGACCATGGTCTTCCGCAACACCGCCGTGGACCTTCTGTTCAATTTCCTCACCACTTACGACGAGGCCGAAGTCGAGGCCGAAGTCAAGGCTCGCCTCTTCGAGGAAGACGCCTTCGCCGTCTCCAGATCGTTTATCGGAGCGATCTACTCCGACGAGATCAGCGATCGCGTGCTGGAGTTCCTCAAGGCTAAGAACACCGACACTTCTGCTGCTGGAAAGGGCGCCATGTTGTTGCCGGACGTTGGCGTGCGCAAGCCCTTCGTGGGCATTATTATCAAGAACCTCAGCAGTCCCTCCTCTCCCTGGAGGCACTACGGCACCTTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCGAGAGGCCTTCTTCGCCGCCAGGGATAAGATCCGTAAGATCTACATCCAAGAGGTCTGCCAGCGCATGTTCGAGATCAAACACAAGAACGCCGCTGCTTCTGCTGCTGGAAACGTCGCGTCGGAGACCGCCGCCGGTGGTGTGCCTGAGGCAATTGAAAGTCAGCTAAAATCCATGGATTACTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

48.84

Weight (kDa)

5.53

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 1037
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 3 cut(s) 371, 1007, 1103
AccII CGCG 4 cut(s) 276, 536, 954, 1268
AclWI GGATC 4 cut(s) 30, 442, 747, 1174
AcsI RAATTY 1 cut(s) 703
AcyI GRCGYC 3 cut(s) 162, 894, 1008
AfiI CCNNNNNNNGG 5 cut(s) 296, 886, 1028, 1049, 1089
AgsI TTSAA 5 cut(s) 106, 575, 708, 826, 1307
AjnI CCWGG 5 cut(s) 9, 726, 1088, 1131, 1169
AleI CACNNNNGTG 1 cut(s) 809
AloI GAACNNNNNNTCC 2 cut(s) 806, 838
AluBI AGCT 5 cut(s) 36, 398, 711, 753, 1315
AluI AGCT 5 cut(s) 36, 398, 711, 753, 1315
Alw21I GWGCWC 3 cut(s) 38, 77, 755
Alw26I GTCTC 4 cut(s) 357, 536, 910, 1268
Alw44I GTGCAC 1 cut(s) 73
AlwI GGATC 4 cut(s) 30, 442, 747, 1174
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 7 cut(s) 129, 390, 423, 849, 861, 1122, 1155
ApaLI GTGCAC 1 cut(s) 73
ApeKI GCWGC 6 cut(s) 263, 512, 521, 995, 1244, 1253
ApoI RAATTY 1 cut(s) 703
AsiSI GCGATCGC 1 cut(s) 952
AspLEI GCGC 6 cut(s) 222, 278, 483, 1010, 1038, 1215
AspS9I GGNCC 4 cut(s) 232, 319, 334, 814
AsuHPI GGTGA 2 cut(s) 106, 826
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 4 cut(s) 232, 319, 334, 814
AxyI CCTNAGG 2 cut(s) 564, 1296
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 3 cut(s) 371, 1007, 1103
BanII GRGCYC 2 cut(s) 38, 755
BbsI GAAGAC 2 cut(s) 787, 897
Bbv12I GWGCWC 3 cut(s) 38, 77, 755
BbvCI CCTCAGC 2 cut(s) 338, 1070
BbvI GCAGC 6 cut(s) 250, 499, 508, 982, 1231, 1240
BccI CCATC 2 cut(s) 53, 320
BceAI ACGGC 3 cut(s) 794, 887, 1117
BcgI CGANNNNNNTGC 4 cut(s) 974, 1008, 1027, 1061
BciT130I CCWGG 5 cut(s) 11, 728, 1090, 1133, 1171
BclI TGATCA 1 cut(s) 441
BcoDI GTCTC 4 cut(s) 357, 536, 910, 1268
BfoI RGCGCY 1 cut(s) 1011
BfuAI ACCTGC 1 cut(s) 86
BglII AGATCT 2 cut(s) 456, 1188
Bme1390I CCNGG 5 cut(s) 11, 728, 1090, 1133, 1171
Bme18I GGWCC 4 cut(s) 232, 319, 334, 814
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 4 cut(s) 232, 319, 334, 814
BmiI GGNNCC 5 cut(s) 373, 405, 1009, 1105, 1137
BmrFI CCNGG 5 cut(s) 11, 728, 1090, 1133, 1171
BoxI GACNNNNGTC 1 cut(s) 791
BpiI GAAGAC 2 cut(s) 787, 897
BpmI CTGGAG 3 cut(s) 892, 980, 1111
Bpu10I CCTNAGC 2 cut(s) 338, 1070
BpuEI CTTGAG 3 cut(s) 221, 290, 953
BsaBI GATNNNNATC 3 cut(s) 446, 461, 1193
BsaHI GRCGYC 3 cut(s) 162, 894, 1008
BsaI GGTCTC 2 cut(s) 536, 1268
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 886, 1028, 1049, 1089
Bse118I RCCGGY 3 cut(s) 251, 551, 1283
Bse1I ACTGG 1 cut(s) 177
Bse21I CCTNAGG 2 cut(s) 564, 1296
Bse8I GATNNNNATC 3 cut(s) 446, 461, 1193
BseBI CCWGG 5 cut(s) 11, 728, 1090, 1133, 1171
BseGI GGATG 3 cut(s) 462, 765, 1194
BseJI GATNNNNATC 3 cut(s) 446, 461, 1193
BseLI CCNNNNNNNGG 5 cut(s) 296, 886, 1028, 1049, 1089
BseMII CTCAG 4 cut(s) 352, 555, 1084, 1287
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 4 cut(s) 140, 221, 396, 1072
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 6 cut(s) 250, 499, 508, 982, 1231, 1240
Bsh1236I CGCG 4 cut(s) 276, 536, 954, 1268
Bsh1285I CGRYCG 1 cut(s) 952
BshFI GGCC 7 cut(s) 131, 392, 425, 851, 863, 1124, 1157
BshNI GGYRCC 3 cut(s) 371, 1007, 1103
BsiEI CGRYCG 1 cut(s) 952
BsiHKAI GWGCWC 3 cut(s) 38, 77, 755
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 5 cut(s) 252, 290, 552, 1022, 1284
BslFI GGGAC 2 cut(s) 330, 1062
BslI CCNNNNNNNGG 5 cut(s) 296, 886, 1028, 1049, 1089
BsmAI GTCTC 4 cut(s) 357, 536, 910, 1268
BsmBI CGTCTC 1 cut(s) 910
BsmFI GGGAC 2 cut(s) 330, 1062
BsnI GGCC 7 cut(s) 131, 392, 425, 851, 863, 1124, 1157
Bso31I GGTCTC 2 cut(s) 536, 1268
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 3 cut(s) 38, 77, 755
Bsp19I CCATGG 4 cut(s) 591, 717, 789, 1323
BspANI GGCC 7 cut(s) 131, 392, 425, 851, 863, 1124, 1157
BspCNI CTCAG 4 cut(s) 351, 556, 1083, 1288
BspFNI CGCG 4 cut(s) 276, 536, 954, 1268
BspLI GGNNCC 5 cut(s) 373, 405, 1009, 1105, 1137
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 4 cut(s) 30, 442, 747, 1174
BspQI GCTCTTC 1 cut(s) 262
BspT107I GGYRCC 3 cut(s) 371, 1007, 1103
BspTNI GGTCTC 2 cut(s) 536, 1268
BsrFI RCCGGY 3 cut(s) 251, 551, 1283
BsrI ACTGG 1 cut(s) 177
BssAI RCCGGY 3 cut(s) 251, 551, 1283
BssNI GRCGYC 3 cut(s) 162, 894, 1008
BssT1I CCWWGG 4 cut(s) 591, 717, 789, 1323
Bst2UI CCWGG 5 cut(s) 11, 728, 1090, 1133, 1171
Bst4CI ACNGT 2 cut(s) 613, 626
Bst6I CTCTTC 2 cut(s) 262, 887
BstACI GRCGYC 3 cut(s) 162, 894, 1008
BstC8I GCNNGC 9 cut(s) 145, 218, 302, 479, 877, 956, 1034, 1040, 1211
BstDEI CTNAG 6 cut(s) 243, 338, 564, 975, 1070, 1296
BstDSI CCRYGG 6 cut(s) 591, 609, 717, 789, 810, 1323
BstENI CCTNNNNNAGG 1 cut(s) 884
BstF5I GGATG 3 cut(s) 462, 765, 1194
BstFNI CGCG 4 cut(s) 276, 536, 954, 1268
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 6 cut(s) 222, 278, 483, 1010, 1038, 1215
BstMAI GTCTC 4 cut(s) 357, 536, 910, 1268
BstMCI CGRYCG 1 cut(s) 952
BstMWI GCNNNNNNNGC 7 cut(s) 170, 431, 518, 521, 1163, 1250, 1253
BstNI CCWGG 5 cut(s) 11, 728, 1090, 1133, 1171
BstNSI RCATGY 1 cut(s) 1219
BstPAI GACNNNNGTC 1 cut(s) 791
BstSCI CCNGG 5 cut(s) 9, 726, 1088, 1131, 1169
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 4 cut(s) 276, 536, 954, 1268
BstV1I GCAGC 6 cut(s) 250, 499, 508, 982, 1231, 1240
BstV2I GAAGAC 2 cut(s) 787, 897
BstX2I RGATCY 4 cut(s) 447, 456, 1179, 1188
BstXI CCANNNNNNTGG 2 cut(s) 400, 1132
BstYI RGATCY 4 cut(s) 447, 456, 1179, 1188
Bsu36I CCTNAGG 2 cut(s) 564, 1296
BsuRI GGCC 7 cut(s) 131, 392, 425, 851, 863, 1124, 1157
BtgI CCRYGG 6 cut(s) 591, 609, 717, 789, 810, 1323
BtsCI GGATG 3 cut(s) 462, 765, 1194
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 9 cut(s) 145, 218, 302, 479, 877, 956, 1034, 1040, 1211
CfoI GCGC 6 cut(s) 222, 278, 483, 1010, 1038, 1215
Cfr10I RCCGGY 3 cut(s) 251, 551, 1283
Cfr13I GGNCC 4 cut(s) 232, 319, 334, 814
CseI GACGC 4 cut(s) 170, 525, 902, 1257
DdeI CTNAG 6 cut(s) 243, 338, 564, 975, 1070, 1296
DinI GGCGCC 1 cut(s) 1009
Eam1104I CTCTTC 2 cut(s) 262, 887
EarI CTCTTC 2 cut(s) 262, 887
Ecl136II GAGCTC 2 cut(s) 36, 753
Eco130I CCWWGG 4 cut(s) 591, 717, 789, 1323
Eco147I AGGCCT 2 cut(s) 425, 1157
Eco24I GRGCYC 2 cut(s) 38, 755
Eco31I GGTCTC 2 cut(s) 536, 1268
Eco47I GGWCC 4 cut(s) 232, 319, 334, 814
Eco53kI GAGCTC 2 cut(s) 36, 753
Eco81I CCTNAGG 2 cut(s) 564, 1296
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 2 cut(s) 36, 753
EcoNI CCTNNNNNAGG 1 cut(s) 884
EcoO109I RGGNCCY 2 cut(s) 232, 334
EcoRII CCWGG 5 cut(s) 9, 726, 1088, 1131, 1169
EcoT14I CCWWGG 4 cut(s) 591, 717, 789, 1323
EcoT38I GRGCYC 2 cut(s) 38, 755
EgeI GGCGCC 1 cut(s) 1009
EheI GGCGCC 1 cut(s) 1009
ErhI CCWWGG 4 cut(s) 591, 717, 789, 1323
Esp3I CGTCTC 1 cut(s) 910
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 330, 1062
FbaI TGATCA 1 cut(s) 441
FokI GGATG 3 cut(s) 449, 752, 1181
FriOI GRGCYC 2 cut(s) 38, 755
FspI TGCGCA 1 cut(s) 1037
GlaI GCGC 6 cut(s) 221, 277, 482, 1009, 1037, 1214
GsuI CTGGAG 3 cut(s) 892, 980, 1111
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 7 cut(s) 131, 392, 425, 851, 863, 1124, 1157
HapII CCGG 5 cut(s) 252, 290, 552, 1022, 1284
HgaI GACGC 4 cut(s) 170, 525, 902, 1257
HhaI GCGC 6 cut(s) 222, 278, 483, 1010, 1038, 1215
Hin1I GRCGYC 3 cut(s) 162, 894, 1008
Hin6I GCGC 6 cut(s) 220, 276, 481, 1008, 1036, 1213
HinP1I GCGC 6 cut(s) 220, 276, 481, 1008, 1036, 1213
HinfI GANTC 6 cut(s) 14, 41, 605, 679, 731, 758
HpaII CCGG 5 cut(s) 252, 290, 552, 1022, 1284
HphI GGTGA 2 cut(s) 106, 826
Hpy166II GTNNAC 2 cut(s) 75, 814
Hpy188III TCNNGA 6 cut(s) 154, 445, 644, 909, 1063, 1222
Hpy8I GTNNAC 2 cut(s) 75, 814
Hpy99I CGWCG 9 cut(s) 128, 389, 434, 541, 848, 941, 1121, 1268, 1273
HpyCH4III ACNGT 2 cut(s) 613, 626
HpyCH4IV ACGT 3 cut(s) 294, 1026, 1263
HpyCH4V TGCA 3 cut(s) 75, 81, 477
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 431, 518, 521, 1163, 1250, 1253
HpyF3I CTNAG 6 cut(s) 243, 338, 564, 975, 1070, 1296
HpySE526I ACGT 3 cut(s) 294, 1026, 1263
Hsp92I GRCGYC 3 cut(s) 162, 894, 1008
HspAI GCGC 6 cut(s) 220, 276, 481, 1008, 1036, 1213
KasI GGCGCC 1 cut(s) 1007
Ksp22I TGATCA 1 cut(s) 441
LguI GCTCTTC 1 cut(s) 262
LmnI GCTCC 5 cut(s) 41, 409, 758, 923, 1141
Lsp1109I GCAGC 6 cut(s) 250, 499, 508, 982, 1231, 1240
MaeII ACGT 3 cut(s) 294, 1026, 1263
MaeIII GTNAC 1 cut(s) 15
MboII GAAGA 7 cut(s) 249, 611, 646, 787, 874, 902, 1153
MfeI CAATTG 3 cut(s) 106, 570, 1302
MflI RGATCY 4 cut(s) 447, 456, 1179, 1188
MhlI GDGCHC 3 cut(s) 38, 77, 755
MluCI AATT 6 cut(s) 106, 570, 596, 703, 826, 1302
Mly113I GGCGCC 1 cut(s) 1008
MlyI GAGTC 3 cut(s) 23, 35, 752
MmeI TCCRAC 6 cut(s) 63, 519, 710, 780, 960, 1251
MslI CAYNNNNRTG 2 cut(s) 179, 809
MspA1I CMGCKG 2 cut(s) 512, 1244
MspI CCGG 5 cut(s) 252, 290, 552, 1022, 1284
MspR9I CCNGG 5 cut(s) 11, 728, 1090, 1133, 1171
MunI CAATTG 3 cut(s) 106, 570, 1302
MvaI CCWGG 5 cut(s) 11, 728, 1090, 1133, 1171
MvnI CGCG 4 cut(s) 276, 536, 954, 1268
MwoI GCNNNNNNNGC 7 cut(s) 170, 431, 518, 521, 1163, 1250, 1253
NarI GGCGCC 1 cut(s) 1008
NcoI CCATGG 4 cut(s) 591, 717, 789, 1323
NlaIV GGNNCC 5 cut(s) 373, 405, 1009, 1105, 1137
NmeAIII GCCGAG 2 cut(s) 57, 774
NmuCI GTSAC 1 cut(s) 15
NsbI TGCGCA 1 cut(s) 1037
NspI RCATGY 1 cut(s) 1219
OliI CACNNNNGTG 1 cut(s) 809
PaeR7I CTCGAG 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 86
PceI AGGCCT 2 cut(s) 425, 1157
PciSI GCTCTTC 1 cut(s) 262
PcsI WCGNNNNNNNCGW 3 cut(s) 849, 900, 945
PfeI GAWTC 3 cut(s) 605, 679, 731
PfoI TCCNGGA 2 cut(s) 9, 726
Ple19I CGATCG 1 cut(s) 952
PleI GAGTC 3 cut(s) 22, 35, 752
PluTI GGCGCC 1 cut(s) 1011
PpsI GAGTC 3 cut(s) 22, 35, 752
PpuMI RGGWCCY 2 cut(s) 232, 334
PshAI GACNNNNGTC 1 cut(s) 791
Psp124BI GAGCTC 2 cut(s) 38, 755
Psp5II RGGWCCY 2 cut(s) 232, 334
Psp6I CCWGG 5 cut(s) 9, 726, 1088, 1131, 1169
PspGI CCWGG 5 cut(s) 9, 726, 1088, 1131, 1169
PspN4I GGNNCC 5 cut(s) 373, 405, 1009, 1105, 1137
PspPI GGNCC 4 cut(s) 232, 319, 334, 814
PspPPI RGGWCCY 2 cut(s) 232, 334
PsuI RGATCY 4 cut(s) 447, 456, 1179, 1188
PvuI CGATCG 1 cut(s) 952
RgaI GCGATCGC 1 cut(s) 952
RseI CAYNNNNRTG 2 cut(s) 179, 809
SacI GAGCTC 2 cut(s) 38, 755
SapI GCTCTTC 1 cut(s) 262
Sau96I GGNCC 4 cut(s) 232, 319, 334, 814
SchI GAGTC 3 cut(s) 23, 35, 752
ScrFI CCNGG 5 cut(s) 11, 728, 1090, 1133, 1171
SduI GDGCHC 3 cut(s) 38, 77, 755
SfaAI GCGATCGC 1 cut(s) 952
SfoI GGCGCC 1 cut(s) 1009
Sfr274I CTCGAG 1 cut(s) 152
SgfI GCGATCGC 1 cut(s) 952
SgrAI CRCCGGYG 2 cut(s) 551, 1283
SinI GGWCC 4 cut(s) 232, 319, 334, 814
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 179, 809
SmlI CTYRAG 4 cut(s) 152, 236, 305, 968
SmoI CTYRAG 4 cut(s) 152, 236, 305, 968
Sse9I AATT 6 cut(s) 106, 570, 596, 703, 826, 1302
SseBI AGGCCT 2 cut(s) 425, 1157
SspDI GGCGCC 1 cut(s) 1007
SstI GAGCTC 2 cut(s) 38, 755
StuI AGGCCT 2 cut(s) 425, 1157
StyD4I CCNGG 5 cut(s) 9, 726, 1088, 1131, 1169
StyI CCWWGG 4 cut(s) 591, 717, 789, 1323
TaaI ACNGT 2 cut(s) 613, 626
TaiI ACGT 3 cut(s) 297, 1029, 1266
TaqI TCGA 7 cut(s) 138, 153, 414, 858, 885, 1146, 1221
TasI AATT 6 cut(s) 106, 570, 596, 703, 826, 1302
TauI GCSGC 7 cut(s) 173, 437, 512, 551, 1169, 1244, 1283
TfiI GAWTC 3 cut(s) 605, 679, 731
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 6 cut(s) 263, 512, 521, 995, 1244, 1253
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 49, 1132
TspGWI ACGGA 2 cut(s) 440, 1172
VneI GTGCAC 1 cut(s) 73
VpaK11BI GGWCC 4 cut(s) 232, 319, 334, 814
XagI CCTNNNNNAGG 1 cut(s) 884
XapI RAATTY 1 cut(s) 703
XceI RCATGY 1 cut(s) 1219
XhoI CTCGAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.