Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005970

Physical Location & Seq

Genomic Coordinates Forward (+)

3879504 .. 3885772

Gene Structure 6269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06620.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTCTGGGCAGCGGTGAGGAGGCTGTGGTGGAAGAAAGCGATGGTGTCGGTGGCGATAGTGGTGGTGGTGGTTGTGGAGGCAAGTCGTACGGTGGCTCTGTGTCGTGCTCGATTTGTCTTGAAGTCGTCGCCGATAATGGGGATAGATCTTGGGCCAAGCTGCAATGTGGCCATCAATTTCATCTAGATTGTATTGGTTCGGCGTTTAATATAAAGGGTGCAATGCAATGCCCTAATTGTCGGAAGATCGAGAAAGGTCAATGGCTTTATGCAAATGGCTGCCGTTCAATTCCGGAATTTAGCATGGATGACTGGAACCATGATGAAGATCTGTATGATCTAAGTTACTCCGAGATGTCCTTTGGTGTTCACTGGTGTCCATTTGGTAGCCTAGCTCGACTTCCTTCGTCATTTGAGGAAGGAGAGTTCTCACCCACTTCATATCATGATTTACTTGGACAACATGCCATCTTTGCTGAGCATACAGCTGTATCATCTGCTGGTCATCCTTGCCCGTATATTGCTTACTTTGGACCAGTTCACCCCTCATCCTCTAATTCTAGTGGCAGTATTTCAGAAGCTTCCAACTTTAACCATCATTGGACGGGCACAACTTTACCTAGTGAACTACCAAGCTCCTATGCTTTTCCTGCCATGGACCTTCATTACCCCAGTTGGGATCATCATTCCCCTCCATTCTCTACAAACAGCAATCATATTGGTGGAGTTGACCAAACGCCAATCCCATCTGTGACTCAAAGATCTGCTAGGCCAAGTTCGGAGATACCAAGATCAGGATCTTTCATGCATCCATTTCTTGTTGGTCACAGTTCTAGTGCGAGAGCCGGCAGCTCAGTCATGTCTTCAATGATTCCTCCTTATCCAGGCAGCAATGCTCGGGCTCGCGACAGAGTCCAAGCTCTTCAGGCATACTATCAACAGCAACAACCTAGTAATTCCCCAACCATGCGCACACCCATGATTTCAGGAGCCCGAAGAACAAGCAATCAAAGAGGTTTGCCTCAAGTAGGGCCAGTGGCTTCATCATCAGATCAGAATGGTGGTTTCTATTTTTACCCTTCTGGTTCATCAGGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

368

Amino Acids

39.32

Weight (kDa)

5.81

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	36 - 82	2.3e-08	Ring finger domain
zf-RING_11	PF17123	37 - 66	8.1e-07	RING-like zinc finger
zf-C3HC4	PF00097	37 - 81	6.8e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05545
fragaria_vesca	FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620
malus_domestica	MD04G1199600.v1.1 MD08G1111000.v1.1 MD12G1212400.v1.1
prunus_persica	Prupe.6G320100_v2.0.a1 Prupe.6G320100_v2.0.a1
pyrus_communis	pycom04g17630 pycom12g19860
rosa_chinensis	RchiOBHm_Chr3g0455821
rosa_laevigata	RLG00000025329
rosa_multiflora	Rmu_ssc0000046.1_g000008 Rmu_ssc0000046.1_g000018
rosa_roxburghii	Rroxscaffold_6G00423430 Rroxscaffold_6G00423930
rosa_rugosa	Rorug03G0010900 Rorug03G0011000
rosa_samantha	Rh3AG069800 Rh3BG072400 Rh3CG070600 Rh3DG073100
rosa_wichuraiana	Rw3G005670 Rw3G006020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	974
AccII	CGCG	1 cut(s)	909
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	2 cut(s)	690, 808
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	911
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	5 cut(s)	141, 679, 797, 887, 1031
AgsI	TTSAA	3 cut(s)	125, 291, 870
AjnI	CCWGG	1 cut(s)	886
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	7 cut(s)	163, 398, 491, 584, 639, 855, 923
AluI	AGCT	7 cut(s)	163, 398, 491, 584, 639, 855, 923
Alw21I	GWGCWC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	690, 808
Ama87I	CYCGRG	1 cut(s)	900
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	5 cut(s)	156, 172, 773, 1034, 1096
ApeKI	GCWGC	5 cut(s)	12, 163, 282, 852, 891
ApoI	RAATTY	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	975
AspS9I	GGNCC	4 cut(s)	156, 536, 661, 1034
AsuHPI	GGTGA	3 cut(s)	29, 426, 536
AvaI	CYCGRG	1 cut(s)	900
AvaII	GGWCC	2 cut(s)	536, 661
BaeGI	GKGCMC	1 cut(s)	614
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	907, 997
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	5 cut(s)	24, 150, 269, 864, 903
BccI	CCATC	5 cut(s)	38, 183, 479, 606, 757
BceAI	ACGGC	2 cut(s)	270, 1083
BciT130I	CCWGG	1 cut(s)	888
BfaI	CTAG	7 cut(s)	188, 395, 564, 624, 771, 837, 954
BglII	AGATCT	3 cut(s)	149, 331, 764
BisI	GCNGC	5 cut(s)	13, 164, 283, 853, 892
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	5 cut(s)	14, 165, 284, 854, 893
Bme1390I	CCNGG	1 cut(s)	888
Bme18I	GGWCC	2 cut(s)	536, 661
BmeT110I	CYCGRG	1 cut(s)	900
BmgT120I	GGNCC	4 cut(s)	156, 536, 661, 1034
BmiI	GGNNCC	2 cut(s)	320, 994
BmrFI	CCNGG	1 cut(s)	888
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	820
BmuI	ACTGGG	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	858
Bpu1102I	GCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	1011
BsaBI	GATNNNNATC	2 cut(s)	330, 799
BsaJI	CCNNGG	1 cut(s)	657
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 679, 797, 887, 1031
Bse118I	RCCGGY	1 cut(s)	848
Bse1I	ACTGG	5 cut(s)	320, 380, 539, 675, 1037
Bse3DI	GCAATG	4 cut(s)	173, 231, 236, 901
Bse8I	GATNNNNATC	2 cut(s)	330, 799
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	888
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	4 cut(s)	316, 508, 551, 811
BseJI	GATNNNNATC	2 cut(s)	330, 799
BseLI	CCNNNNNNNGG	5 cut(s)	141, 679, 797, 887, 1031
BseMI	GCAATG	4 cut(s)	173, 231, 236, 901
BseMII	CTCAG	2 cut(s)	471, 870
BseNI	ACTGG	5 cut(s)	320, 380, 539, 675, 1037
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	5 cut(s)	24, 150, 269, 864, 903
Bsh1236I	CGCG	1 cut(s)	909
BshFI	GGCC	5 cut(s)	158, 174, 775, 1036, 1098
BsiHKAI	GWGCWC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	900
BsiSI	CCGG	2 cut(s)	296, 849
BsiWI	CGTACG	1 cut(s)	90
BslI	CCNNNNNNNGG	5 cut(s)	141, 679, 797, 887, 1031
BsnI	GGCC	5 cut(s)	158, 174, 775, 1036, 1098
BsoBI	CYCGRG	1 cut(s)	900
Bsp1286I	GDGCHC	4 cut(s)	113, 614, 907, 997
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	9 cut(s)	149, 249, 331, 340, 682, 764, 794, 800, 1054
Bsp1720I	GCTNAGC	1 cut(s)	480
Bsp19I	CCATGG	1 cut(s)	657
Bsp68I	TCGCGA	1 cut(s)	909
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	5 cut(s)	158, 174, 775, 1036, 1098
BspCNI	CTCAG	2 cut(s)	472, 869
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	909
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	320, 994
BspPI	GGATC	2 cut(s)	690, 808
BspQI	GCTCTTC	1 cut(s)	930
BsrDI	GCAATG	4 cut(s)	173, 231, 236, 901
BsrFI	RCCGGY	1 cut(s)	848
BsrI	ACTGG	5 cut(s)	320, 380, 539, 675, 1037
BssAI	RCCGGY	1 cut(s)	848
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	9 cut(s)	149, 249, 331, 340, 682, 764, 794, 800, 1054
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	2 cut(s)	95, 833
Bst6I	CTCTTC	1 cut(s)	930
BstC8I	GCNNGC	2 cut(s)	850, 907
BstDEI	CTNAG	3 cut(s)	344, 480, 856
BstDSI	CCRYGG	1 cut(s)	657
BstENI	CCTNNNNNAGG	2 cut(s)	885, 1029
BstF5I	GGATG	4 cut(s)	316, 508, 551, 811
BstFNI	CGCG	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	9 cut(s)	152, 252, 334, 343, 685, 767, 797, 803, 1057
BstMBI	GATC	9 cut(s)	149, 249, 331, 340, 682, 764, 794, 800, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 653, 929
BstNI	CCWGG	1 cut(s)	888
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	886
BstSLI	GKGCMC	1 cut(s)	614
BstUI	CGCG	1 cut(s)	909
BstV1I	GCAGC	5 cut(s)	24, 150, 269, 864, 903
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	4 cut(s)	149, 331, 764, 800
BstYI	RGATCY	4 cut(s)	149, 331, 764, 800
BsuRI	GGCC	5 cut(s)	158, 174, 775, 1036, 1098
BtgI	CCRYGG	1 cut(s)	657
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	4 cut(s)	316, 508, 551, 811
BtsIMutI	CAGTG	2 cut(s)	373, 1044
BtuMI	TCGCGA	1 cut(s)	909
Cac8I	GCNNGC	2 cut(s)	850, 907
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	975
Cfr10I	RCCGGY	1 cut(s)	848
Cfr13I	GGNCC	4 cut(s)	156, 536, 661, 1034
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	9 cut(s)	307, 323, 449, 467, 658, 808, 862, 970, 982
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	344, 480, 856
DpnI	GATC	9 cut(s)	151, 251, 333, 342, 684, 766, 796, 802, 1056
DpnII	GATC	9 cut(s)	149, 249, 331, 340, 682, 764, 794, 800, 1054
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	2 cut(s)	907, 997
Eco47I	GGWCC	2 cut(s)	536, 661
Eco57I	CTGAAG	1 cut(s)	911
Eco88I	CYCGRG	1 cut(s)	900
EcoNI	CCTNNNNNAGG	2 cut(s)	885, 1029
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	813
EcoT38I	GRGCYC	2 cut(s)	907, 997
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	9 cut(s)	310, 326, 452, 470, 661, 811, 865, 973, 985
FatI	CATG	9 cut(s)	306, 322, 448, 466, 657, 807, 861, 969, 981
Fnu4HI	GCNGC	5 cut(s)	13, 164, 283, 853, 892
FokI	GGATG	4 cut(s)	323, 495, 538, 798
FriOI	GRGCYC	2 cut(s)	907, 997
Fsp4HI	GCNGC	5 cut(s)	13, 164, 283, 853, 892
FspAI	RTGCGCAY	1 cut(s)	974
FspBI	CTAG	7 cut(s)	188, 395, 564, 624, 771, 837, 954
FspI	TGCGCA	1 cut(s)	974
GlaI	GCGC	1 cut(s)	974
GluI	GCNGC	5 cut(s)	13, 164, 283, 853, 892
HaeIII	GGCC	5 cut(s)	158, 174, 775, 1036, 1098
HapII	CCGG	2 cut(s)	296, 849
HhaI	GCGC	1 cut(s)	975
Hin1II	CATG	9 cut(s)	310, 326, 452, 470, 661, 811, 865, 973, 985
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	3 cut(s)	757, 874, 915
HpaII	CCGG	2 cut(s)	296, 849
HphI	GGTGA	3 cut(s)	29, 426, 536
Hpy166II	GTNNAC	4 cut(s)	373, 544, 629, 733
Hpy188I	TCNGA	6 cut(s)	246, 355, 580, 784, 1054, 1059
Hpy188III	TCNNGA	8 cut(s)	122, 188, 253, 296, 449, 798, 908, 990
Hpy8I	GTNNAC	4 cut(s)	373, 544, 629, 733
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	416, 417, 674, 1092
HpyCH4III	ACNGT	2 cut(s)	95, 833
HpyCH4V	TGCA	5 cut(s)	166, 224, 229, 275, 811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 653, 929
HpyF3I	CTNAG	3 cut(s)	344, 480, 856
Hsp92II	CATG	9 cut(s)	310, 326, 452, 470, 661, 811, 865, 973, 985
HspAI	GCGC	1 cut(s)	973
Kpn2I	TCCGGA	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	848
KroNI	GCCGGC	1 cut(s)	850
Kzo9I	GATC	9 cut(s)	149, 249, 331, 340, 682, 764, 794, 800, 1054
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	2 cut(s)	644, 992
Lsp1109I	GCAGC	5 cut(s)	24, 150, 269, 864, 903
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	7 cut(s)	188, 395, 564, 624, 771, 837, 954
MaeIII	GTNAC	3 cut(s)	347, 754, 827
MalI	GATC	9 cut(s)	151, 251, 333, 342, 684, 766, 796, 802, 1056
MboI	GATC	9 cut(s)	149, 249, 331, 340, 682, 764, 794, 800, 1054
MboII	GAAGA	6 cut(s)	47, 259, 341, 858, 917, 1011
MflI	RGATCY	4 cut(s)	149, 331, 764, 800
MhlI	GDGCHC	4 cut(s)	113, 614, 907, 997
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	6 cut(s)	179, 238, 291, 299, 559, 958
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	2 cut(s)	751, 924
MmeI	TCCRAC	2 cut(s)	224, 612
Mox20I	TGGCCA	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	813
MroI	TCCGGA	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	848
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	2 cut(s)	210, 594
MslI	CAYNNNNRTG	2 cut(s)	723, 980
Msp20I	TGGCCA	1 cut(s)	174
MspA1I	CMGCKG	2 cut(s)	15, 491
MspI	CCGG	2 cut(s)	296, 849
MspR9I	CCNGG	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	888
MvnI	CGCG	1 cut(s)	909
MwoI	GCNNNNNNNGC	3 cut(s)	476, 653, 929
NaeI	GCCGGC	1 cut(s)	850
NcoI	CCATGG	1 cut(s)	657
NdeII	GATC	9 cut(s)	149, 249, 331, 340, 682, 764, 794, 800, 1054
NgoMIV	GCCGGC	1 cut(s)	848
NlaIII	CATG	9 cut(s)	310, 326, 452, 470, 661, 811, 865, 973, 985
NlaIV	GGNNCC	2 cut(s)	320, 994
NmuCI	GTSAC	2 cut(s)	754, 827
NruI	TCGCGA	1 cut(s)	909
NsbI	TGCGCA	1 cut(s)	974
NsiI	ATGCAT	1 cut(s)	813
NspI	RCATGY	1 cut(s)	470
PagI	TCATGA	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	930
PdiI	GCCGGC	1 cut(s)	850
PfeI	GAWTC	1 cut(s)	874
Pfl23II	CGTACG	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	914
PkrI	GCNGC	5 cut(s)	14, 165, 284, 854, 893
PleI	GAGTC	2 cut(s)	751, 923
PpsI	GAGTC	2 cut(s)	751, 923
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspLI	CGTACG	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	320, 994
PspPI	GGNCC	4 cut(s)	156, 536, 661, 1034
PsuI	RGATCY	4 cut(s)	149, 331, 764, 800
PsyI	GACNNNGTC	1 cut(s)	914
PvuII	CAGCTG	1 cut(s)	491
RruI	TCGCGA	1 cut(s)	909
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	2 cut(s)	723, 980
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	2 cut(s)	210, 594
SatI	GCNGC	5 cut(s)	13, 164, 283, 853, 892
Sau3AI	GATC	9 cut(s)	149, 249, 331, 340, 682, 764, 794, 800, 1054
Sau96I	GGNCC	4 cut(s)	156, 536, 661, 1034
SchI	GAGTC	2 cut(s)	751, 924
ScrFI	CCNGG	1 cut(s)	888
SduI	GDGCHC	4 cut(s)	113, 614, 907, 997
SfaNI	GCATC	1 cut(s)	820
SinI	GGWCC	2 cut(s)	536, 661
SmiMI	CAYNNNNRTG	2 cut(s)	723, 980
SmlI	CTYRAG	1 cut(s)	1026
SmoI	CTYRAG	1 cut(s)	1026
Sse9I	AATT	6 cut(s)	179, 238, 291, 299, 559, 958
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	7 cut(s)	188, 395, 564, 624, 771, 837, 954
StyD4I	CCNGG	1 cut(s)	886
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	95, 833
TaqI	TCGA	3 cut(s)	113, 252, 400
TasI	AATT	6 cut(s)	179, 238, 291, 299, 559, 958
TfiI	GAWTC	1 cut(s)	874
Tru1I	TTAA	2 cut(s)	210, 594
Tru9I	TTAA	2 cut(s)	210, 594
TscAI	CASTG	2 cut(s)	380, 1044
TseFI	GTSAC	2 cut(s)	754, 827
TseI	GCWGC	5 cut(s)	12, 163, 282, 852, 891
Tsp45I	GTSAC	2 cut(s)	754, 827
TspDTI	ATGAA	7 cut(s)	173, 342, 432, 656, 796, 1035, 1080
TspRI	CASTG	2 cut(s)	380, 1044
Tth111I	GACNNNGTC	1 cut(s)	914
VpaK11BI	GGWCC	2 cut(s)	536, 661
XagI	CCTNNNNNAGG	2 cut(s)	885, 1029
XapI	RAATTY	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	1 cut(s)	470
XspI	CTAG	7 cut(s)	188, 395, 564, 624, 771, 837, 954
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.