RchiOBHm_Chr3g0455821

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005970
Physical Location & Seq
Forward (+)
5402100 .. 5408729
6630 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42273

Sequence Viewer

Length: 1305 bp
ATGGGTCTGGGCAGCGATGAAGAGGTGGTTGTTGAAGAAAGCGATGGCGTCGGTGGCGATGGTGGTGGTGGTTGTGGAGGCAAGTCGTACGGTGGCTCTGTGTCCTGCTCGATTTGCCTTGAAGTCGTCGCCGATAATGGGGATAGATCTTGGGCCAAGCTGCAATGTGGGCATGAATTTCATCTAGATTGCATTGGTTCGGCGTTTAATATAAAGGGCGCAATGCAATGCCCTAATTGTCGGAAGATTGAGAAAGGTCAATGGCTTTATGCTAATGGCTGCCGTTCATTTCCAGATTTTAGCATGGATGACTGGAACCATGATGAAGATCTGTATGATCTAAGTTATTCCGAAATGTCCTTTGGTGTTCACTGGTGTCCATTTGGTAGCTTAGCAAGACTTCCTTCATCATTTGAGGAAGGAGAGTTCTCACCAACTTCATATCATGATTTACTTGGACAGCATGCCATCTTTGCTGAGCATACAGCTGTATCATCTGCTGCTCATCCTTGCCCATATATTGCTTACTTTGGACCAATCCACCCCTCATCCTCTAATTCAAGTGGAAGTGTTTCAGAAGCTTCCAACTTTAACCACCATTGGACTGGCACATCTGTACCTAGTGAACTGCCAAGCTCCTATGCTTTTCCTGCCATGGATCTTCATTACCACAGTTGGGAGCACCATTCCCCTCCATTCTCTACAACCAGCAGTCATATTGGTGGGGTTGACCAAACTTCAATCCCATCTGTGACTCAAAGATCTGCTAGGTCGAGTTCGGAGATACCAAGATCAGGATCTTTCATGCATCCCTTTCTTGTTGGTCACAGTTCTAGTGCTAGAGCCGGCAGCTCAGTCACATCTTCAATGATTCCTCCTTATCCAGGCAGCAATGCTCGGGCTCGCGACAGAGTCCAAGCTCTTCAGGCATACTACCAACAGCAACAACCTAGCAATTCACCAACCATGCGCACACCCATGATTTCAGGAGCCCGAAGATCAAGCAGTCAAAGAGGTTTGCCTCAAGTAGGGCCAGTGGCTTCATCATCAGATCAAAATGGTGGTTTCTATTTTTACCCTTCTGGTTCATCAGGCCGTAACTACCAAGAGGCTGAAAATCCTTTATCTACTCGTTTTCATGCGTGGGAAAGAGATCACCTGCCTTCATTCTCGATGAATCAGGTTGACCGTGATCCTGGTTGGGCTGCTCTTCACCAGGGTGGTAGTGGATCAGAGTCGGCAATCAGGGGAAACAGCTTACGGCGGCATGCATCTGAGAGGACATCTTCACAAAATCGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_11 zf-RING_2

Protein Analysis

434

Amino Acids

46.91

Weight (kDa)

5.9

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 35 - 81 1.2e-07 Ring finger domain
zf-C3HC4 PF00097 36 - 80 1.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 36 - 65 2.7e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1167
Acc16I TGCGCA 1 cut(s) 971
Acc36I ACCTGC 1 cut(s) 1167
AccII CGCG 1 cut(s) 906
AciI CCGC 1 cut(s) 1264
AclWI GGATC 4 cut(s) 666, 805, 1187, 1237
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 908
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 89, 618
AfiI CCNNNNNNNGG 5 cut(s) 138, 676, 794, 884, 1028
AgsI TTSAA 5 cut(s) 35, 122, 561, 741, 867
AjnI CCWGG 3 cut(s) 883, 1195, 1215
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AleI CACNNNNGTG 1 cut(s) 1218
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 8 cut(s) 160, 390, 488, 581, 636, 852, 920, 1257
AluI AGCT 8 cut(s) 160, 390, 488, 581, 636, 852, 920, 1257
Alw21I GWGCWC 1 cut(s) 684
AlwI GGATC 4 cut(s) 666, 805, 1187, 1237
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 3 cut(s) 153, 1031, 1093
ApeKI GCWGC 7 cut(s) 12, 160, 279, 500, 849, 888, 1205
ApoI RAATTY 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 571
AspLEI GCGC 2 cut(s) 221, 972
AspS9I GGNCC 3 cut(s) 153, 533, 1031
AsuHPI GGTGA 4 cut(s) 423, 951, 1148, 1205
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 1 cut(s) 533
BaeI ACNNNNGTAYC 4 cut(s) 474, 507, 600, 633
BanII GRGCYC 2 cut(s) 904, 994
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 7 cut(s) 24, 147, 266, 487, 861, 900, 1192
BccI CCATC 4 cut(s) 38, 53, 476, 754
BceAI ACGGC 3 cut(s) 267, 1080, 1277
BciT130I CCWGG 3 cut(s) 885, 1197, 1217
BfaI CTAG 6 cut(s) 185, 621, 768, 834, 840, 951
BfuAI ACCTGC 1 cut(s) 1167
BglII AGATCT 3 cut(s) 146, 328, 761
BisI GCNGC 8 cut(s) 13, 161, 280, 501, 850, 889, 1206, 1265
BlpI GCTNAGC 2 cut(s) 391, 477
BlsI GCNGC 8 cut(s) 14, 162, 281, 502, 851, 890, 1207, 1266
Bme1390I CCNGG 3 cut(s) 885, 1197, 1217
Bme18I GGWCC 1 cut(s) 533
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 3 cut(s) 153, 533, 1031
BmiI GGNNCC 2 cut(s) 317, 991
BmrFI CCNGG 3 cut(s) 885, 1197, 1217
BmsI GCATC 2 cut(s) 817, 1280
Bpu1102I GCTNAGC 2 cut(s) 391, 477
BpuEI CTTGAG 1 cut(s) 1008
BsaBI GATNNNNATC 2 cut(s) 327, 796
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 654, 1216
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 676, 794, 884, 1028
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 4 cut(s) 317, 377, 610, 1034
Bse3DI GCAATG 4 cut(s) 170, 228, 233, 898
Bse8I GATNNNNATC 2 cut(s) 327, 796
BseBI CCWGG 3 cut(s) 885, 1197, 1217
BseDI CCNNGG 2 cut(s) 654, 1216
BseGI GGATG 4 cut(s) 313, 505, 548, 808
BseJI GATNNNNATC 2 cut(s) 327, 796
BseLI CCNNNNNNNGG 5 cut(s) 138, 676, 794, 884, 1028
BseMI GCAATG 4 cut(s) 170, 228, 233, 898
BseMII CTCAG 3 cut(s) 468, 867, 1266
BseNI ACTGG 4 cut(s) 317, 377, 610, 1034
BseXI GCAGC 7 cut(s) 24, 147, 266, 487, 861, 900, 1192
Bsh1236I CGCG 1 cut(s) 906
BshFI GGCC 3 cut(s) 155, 1033, 1095
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 1 cut(s) 846
BsiWI CGTACG 1 cut(s) 87
BslI CCNNNNNNNGG 5 cut(s) 138, 676, 794, 884, 1028
BsnI GGCC 3 cut(s) 155, 1033, 1095
BsoBI CYCGRG 1 cut(s) 897
Bsp1286I GDGCHC 3 cut(s) 684, 904, 994
Bsp1720I GCTNAGC 2 cut(s) 391, 477
Bsp19I CCATGG 1 cut(s) 654
Bsp68I TCGCGA 1 cut(s) 906
BspACI CCGC 1 cut(s) 1264
BspANI GGCC 3 cut(s) 155, 1033, 1095
BspCNI CTCAG 3 cut(s) 469, 866, 1267
BspFNI CGCG 1 cut(s) 906
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 317, 991
BspMI ACCTGC 1 cut(s) 1167
BspPI GGATC 4 cut(s) 666, 805, 1187, 1237
BspQI GCTCTTC 2 cut(s) 927, 1215
BsrDI GCAATG 4 cut(s) 170, 228, 233, 898
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 4 cut(s) 317, 377, 610, 1034
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 2 cut(s) 654, 1216
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 654
Bst2UI CCWGG 3 cut(s) 885, 1197, 1217
Bst4CI ACNGT 4 cut(s) 92, 674, 830, 1190
Bst6I CTCTTC 3 cut(s) 15, 927, 1215
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 4 cut(s) 465, 847, 904, 1269
BstDEI CTNAG 5 cut(s) 341, 391, 477, 853, 1275
BstDSI CCRYGG 1 cut(s) 654
BstENI CCTNNNNNAGG 2 cut(s) 882, 1026
BstF5I GGATG 4 cut(s) 313, 505, 548, 808
BstFNI CGCG 1 cut(s) 906
BstHHI GCGC 2 cut(s) 221, 972
BstMWI GCNNNNNNNGC 6 cut(s) 54, 114, 169, 473, 650, 926
BstNI CCWGG 3 cut(s) 885, 1197, 1217
BstNSI RCATGY 2 cut(s) 467, 1271
BstSCI CCNGG 3 cut(s) 883, 1195, 1215
BstUI CGCG 1 cut(s) 906
BstV1I GCAGC 7 cut(s) 24, 147, 266, 487, 861, 900, 1192
BstX2I RGATCY 5 cut(s) 146, 328, 658, 761, 797
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 5 cut(s) 146, 328, 658, 761, 797
BsuRI GGCC 3 cut(s) 155, 1033, 1095
BtgI CCRYGG 1 cut(s) 654
BtgZI GCGATG 3 cut(s) 30, 57, 72
BtsCI GGATG 4 cut(s) 313, 505, 548, 808
BtsIMutI CAGTG 2 cut(s) 370, 1041
BtuMI TCGCGA 1 cut(s) 906
BveI ACCTGC 1 cut(s) 1167
Cac8I GCNNGC 4 cut(s) 465, 847, 904, 1269
CciI TCATGA 1 cut(s) 445
CfoI GCGC 2 cut(s) 221, 972
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 3 cut(s) 153, 533, 1031
CseI GACGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 88, 617
CviQI GTAC 2 cut(s) 88, 617
DdeI CTNAG 5 cut(s) 341, 391, 477, 853, 1275
Eam1104I CTCTTC 3 cut(s) 15, 927, 1215
EarI CTCTTC 3 cut(s) 15, 927, 1215
Eco130I CCWWGG 1 cut(s) 654
Eco24I GRGCYC 2 cut(s) 904, 994
Eco47I GGWCC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 908
Eco88I CYCGRG 1 cut(s) 897
EcoNI CCTNNNNNAGG 2 cut(s) 882, 1026
EcoRII CCWGG 3 cut(s) 883, 1195, 1215
EcoT14I CCWWGG 1 cut(s) 654
EcoT22I ATGCAT 2 cut(s) 810, 1273
EcoT38I GRGCYC 2 cut(s) 904, 994
ErhI CCWWGG 1 cut(s) 654
FalI AAGNNNNNCTT 2 cut(s) 388, 420
Fnu4HI GCNGC 8 cut(s) 13, 161, 280, 501, 850, 889, 1206, 1265
FokI GGATG 4 cut(s) 320, 492, 535, 795
FriOI GRGCYC 2 cut(s) 904, 994
Fsp4HI GCNGC 8 cut(s) 13, 161, 280, 501, 850, 889, 1206, 1265
FspAI RTGCGCAY 1 cut(s) 971
FspBI CTAG 6 cut(s) 185, 621, 768, 834, 840, 951
FspI TGCGCA 1 cut(s) 971
GlaI GCGC 2 cut(s) 220, 971
GluI GCNGC 8 cut(s) 13, 161, 280, 501, 850, 889, 1206, 1265
HaeIII GGCC 3 cut(s) 155, 1033, 1095
HapII CCGG 1 cut(s) 846
HgaI GACGC 1 cut(s) 37
HhaI GCGC 2 cut(s) 221, 972
Hin1I GRCGYC 1 cut(s) 48
Hin6I GCGC 2 cut(s) 219, 970
HinP1I GCGC 2 cut(s) 219, 970
HincII GTYRAC 2 cut(s) 730, 1186
HindII GTYRAC 2 cut(s) 730, 1186
HindIII AAGCTT 1 cut(s) 579
HinfI GANTC 5 cut(s) 754, 871, 912, 1177, 1235
HpaII CCGG 1 cut(s) 846
HphI GGTGA 4 cut(s) 423, 951, 1148, 1205
Hpy166II GTNNAC 4 cut(s) 370, 626, 730, 1186
Hpy188I TCNGA 7 cut(s) 243, 352, 577, 781, 1051, 1234, 1276
Hpy188III TCNNGA 7 cut(s) 185, 293, 446, 795, 905, 987, 1171
Hpy8I GTNNAC 4 cut(s) 370, 626, 730, 1186
Hpy99I CGWCG 2 cut(s) 53, 131
HpyAV CCTTC 4 cut(s) 413, 414, 1089, 1173
HpyCH4III ACNGT 4 cut(s) 92, 674, 830, 1190
HpyCH4V TGCA 5 cut(s) 163, 192, 226, 808, 1271
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 114, 169, 473, 650, 926
HpyF3I CTNAG 5 cut(s) 341, 391, 477, 853, 1275
Hsp92I GRCGYC 1 cut(s) 48
HspAI GCGC 2 cut(s) 219, 970
KroI GCCGGC 1 cut(s) 845
KroNI GCCGGC 1 cut(s) 847
LguI GCTCTTC 2 cut(s) 927, 1215
LmnI GCTCC 3 cut(s) 641, 679, 989
Lsp1109I GCAGC 7 cut(s) 24, 147, 266, 487, 861, 900, 1192
LweI GCATC 2 cut(s) 817, 1280
MaeI CTAG 6 cut(s) 185, 621, 768, 834, 840, 951
MaeIII GTNAC 4 cut(s) 751, 824, 856, 1097
MflI RGATCY 5 cut(s) 146, 328, 658, 761, 797
MhlI GDGCHC 3 cut(s) 684, 904, 994
MluCI AATT 4 cut(s) 176, 235, 556, 955
MlyI GAGTC 3 cut(s) 748, 921, 1244
MmeI TCCRAC 2 cut(s) 221, 609
Mph1103I ATGCAT 2 cut(s) 810, 1273
MroNI GCCGGC 1 cut(s) 845
MroXI GAANNNNTTC 1 cut(s) 571
MseI TTAA 2 cut(s) 207, 591
MslI CAYNNNNRTG 3 cut(s) 720, 977, 1218
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 846
MspR9I CCNGG 3 cut(s) 885, 1197, 1217
MvaI CCWGG 3 cut(s) 885, 1197, 1217
MvnI CGCG 1 cut(s) 906
MwoI GCNNNNNNNGC 6 cut(s) 54, 114, 169, 473, 650, 926
NaeI GCCGGC 1 cut(s) 847
NcoI CCATGG 1 cut(s) 654
NgoMIV GCCGGC 1 cut(s) 845
NlaIV GGNNCC 2 cut(s) 317, 991
NmuCI GTSAC 3 cut(s) 751, 824, 856
NruI TCGCGA 1 cut(s) 906
NsbI TGCGCA 1 cut(s) 971
NsiI ATGCAT 2 cut(s) 810, 1273
NspI RCATGY 2 cut(s) 467, 1271
OliI CACNNNNGTG 1 cut(s) 1218
PaeI GCATGC 2 cut(s) 467, 1271
PagI TCATGA 1 cut(s) 445
PaqCI CACCTGC 1 cut(s) 1167
PciSI GCTCTTC 2 cut(s) 927, 1215
PdiI GCCGGC 1 cut(s) 847
PdmI GAANNNNTTC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 871, 1177
Pfl23II CGTACG 1 cut(s) 87
PflFI GACNNNGTC 1 cut(s) 911
PkrI GCNGC 8 cut(s) 14, 162, 281, 502, 851, 890, 1207, 1266
PleI GAGTC 3 cut(s) 748, 920, 1243
PpsI GAGTC 3 cut(s) 748, 920, 1243
Psp6I CCWGG 3 cut(s) 883, 1195, 1215
PspGI CCWGG 3 cut(s) 883, 1195, 1215
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 317, 991
PspPI GGNCC 3 cut(s) 153, 533, 1031
PsuI RGATCY 5 cut(s) 146, 328, 658, 761, 797
PsyI GACNNNGTC 1 cut(s) 911
PvuII CAGCTG 1 cut(s) 488
RruI TCGCGA 1 cut(s) 906
RsaI GTAC 2 cut(s) 89, 618
RsaNI GTAC 2 cut(s) 88, 617
RseI CAYNNNNRTG 3 cut(s) 720, 977, 1218
SapI GCTCTTC 2 cut(s) 927, 1215
SaqAI TTAA 2 cut(s) 207, 591
SatI GCNGC 8 cut(s) 13, 161, 280, 501, 850, 889, 1206, 1265
Sau96I GGNCC 3 cut(s) 153, 533, 1031
SchI GAGTC 3 cut(s) 748, 921, 1244
ScrFI CCNGG 3 cut(s) 885, 1197, 1217
SduI GDGCHC 3 cut(s) 684, 904, 994
SfaNI GCATC 2 cut(s) 817, 1280
SinI GGWCC 1 cut(s) 533
SmiMI CAYNNNNRTG 3 cut(s) 720, 977, 1218
SmlI CTYRAG 1 cut(s) 1023
SmoI CTYRAG 1 cut(s) 1023
SphI GCATGC 2 cut(s) 467, 1271
Sse9I AATT 4 cut(s) 176, 235, 556, 955
SsiI CCGC 1 cut(s) 1264
SspMI CTAG 6 cut(s) 185, 621, 768, 834, 840, 951
StyD4I CCNGG 3 cut(s) 883, 1195, 1215
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 4 cut(s) 92, 674, 830, 1190
TaqI TCGA 3 cut(s) 110, 773, 1172
TaqII GACCGA 1 cut(s) 1287
TasI AATT 4 cut(s) 176, 235, 556, 955
TauI GCSGC 1 cut(s) 1267
TfiI GAWTC 2 cut(s) 871, 1177
Tru1I TTAA 2 cut(s) 207, 591
Tru9I TTAA 2 cut(s) 207, 591
TscAI CASTG 2 cut(s) 377, 1041
TseFI GTSAC 3 cut(s) 751, 824, 856
TseI GCWGC 7 cut(s) 12, 160, 279, 500, 849, 888, 1205
Tsp45I GTSAC 3 cut(s) 751, 824, 856
TspRI CASTG 2 cut(s) 377, 1041
Tth111I GACNNNGTC 1 cut(s) 911
VpaK11BI GGWCC 1 cut(s) 533
XagI CCTNNNNNAGG 2 cut(s) 882, 1026
XapI RAATTY 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 2 cut(s) 467, 1271
XcmI CCANNNNNNNNNTGG 2 cut(s) 602, 1223
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 6 cut(s) 185, 621, 768, 834, 840, 951
Zsp2I ATGCAT 2 cut(s) 810, 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.