pycom04g17630

RING-like zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
19934227 .. 19940562
6336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17630.4

Sequence Viewer

Length: 1299 bp
ATGGGGCTCGGCAGTGATGAAGAGGTTGTGGTTGACGAAAGCGATGGCGGTGGCGATGGCGGTGGTTGTGGTGGCAACTCGTGCGGAGGCTCTGTTTCCTGCTCGATTTGCCTTGAAGTCGTCGCCGATAAAGGGGATAGATCTTGGGCCAAGCTGCAATGTGGGCATCAATTTCATCTAGATTGCATTGGTTCAGCCTTCAATGTAAAGGGGGCAATGCAATGCCCTAATTGTCGGAAAATTGAGAAAGGTCAATGGCTTTATTCTAATGGATGCCGTTCATTTCCGGAATTTAGCATGGATGACTGGACACATGATGAGGATCTCTATGATTTAAGTTATTCTGAAATGTCCTTTGGTGTGCACTGGTGTCCATTTGGTAGCTTAGCACGACTTCCCTCATCATTTGAGGAAGGGGAGTTTTCACCACCATCATATCATGAATTACTTGGACAGCATGCTATCTTCGCTGAGCATACAGCTGTATCATCTGCTACCCATCCTTGCCCATATATCGCTTACCTTGGGCCAATTCACCCTTCATCCTCAAACTCCAGTGGAAATGTGTCAGAAGCTTCCAACTTCAACCATCATTGGAGCAGCACATCTGTACCTAGTGAAATGCCCAACTCCTATGCTTTTCCTGCCATGGATCTTCATTATCACAGTTGGGAGCATCATTCCCCGCCTCCATTCTCTACAACCAACAATCATATTGCTGGCGCCGACCAGGCTTCAGTTCCATCTGTTACTCAAAGATCTGCTAGGCCGAGCGCAGATATACCAAGATCAGGATCTCTTATGCATCCATTCCTTGTCGGTCACAGTGCTAGAGCTGGCAGCTCAGTCACTTCGTCGATGATTCCTCCTTATCCTGGCAGCAATGCACGGGCCCGCGACAGAGTCCAAGCTCTTCAGGCATATTATCAACAGCAACAACCTAGTAATTCACCAACCATGCGTACGCCCATAGTTCCAGGAGCCCGGAGATCCAGCGGTCAAAGAGGGGTAGCTCAAGTAGGGCCAGTGGCTTCATCATCAGACCAAAATGGTGGTTTCTATTTTTTCCCGTCCGGTTCATCAGGTCGTAACTACCAAGAAGCTGAAAATCCGTTGCCTAATCGTTCTCATCCATGGGAAAGAGATCACATGCCTTCATTCTCGATGAATCAGGTAGACCGAGATCAAGGTTGGTCTGCTTTTAACCAAGGTGGCAGTGGTTCAGACTCGGCCATCAGAGGGAGCAGCTTCCGGCAAAGGCATGGGTCCGAGAGATCATCCTCACAAAACCGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

433

Amino Acids

46.69

Weight (kDa)

5.93

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 722
AccI GTMKAC 1 cut(s) 1176
AccII CGCG 1 cut(s) 897
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 6 cut(s) 48, 60, 84, 686, 895, 996
AclWI GGATC 4 cut(s) 330, 660, 802, 984
AcoI YGGCCR 1 cut(s) 1230
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 2 cut(s) 720, 899
AcyI GRCGYC 1 cut(s) 723
AfaI GTAC 2 cut(s) 612, 964
AfiI CCNNNNNNNGG 4 cut(s) 132, 791, 875, 1239
AgeI ACCGGT 1 cut(s) 1290
AgsI TTSAA 3 cut(s) 116, 202, 586
AjnI CCWGG 3 cut(s) 729, 874, 976
AjuI GAANNNNNNNTTGG 4 cut(s) 339, 371, 523, 555
Alw21I GWGCWC 1 cut(s) 366
Alw44I GTGCAC 1 cut(s) 362
AlwI GGATC 4 cut(s) 330, 660, 802, 984
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 6 cut(s) 147, 527, 767, 891, 1022, 1230
ApaI GGGCCC 1 cut(s) 895
ApaLI GTGCAC 1 cut(s) 362
ApeKI GCWGC 5 cut(s) 154, 600, 840, 879, 1245
ApoI RAATTY 1 cut(s) 290
AsiGI ACCGGT 1 cut(s) 1290
AspLEI GCGC 2 cut(s) 725, 776
AspS9I GGNCC 6 cut(s) 147, 527, 891, 892, 1022, 1266
AsuC2I CCSGG 1 cut(s) 985
AsuHPI GGTGA 3 cut(s) 417, 527, 942
AvaII GGWCC 1 cut(s) 1266
BaeGI GKGCMC 2 cut(s) 366, 895
BaeI ACNNNNGTAYC 4 cut(s) 468, 501, 594, 627
BanI GGYRCC 1 cut(s) 722
BanII GRGCYC 3 cut(s) 9, 895, 985
BauI CACGAG 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 5 cut(s) 141, 612, 852, 891, 1257
BccI CCATC 7 cut(s) 38, 50, 439, 507, 597, 751, 1241
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 3 cut(s) 731, 876, 978
BcnI CCSGG 1 cut(s) 985
BfaI CTAG 5 cut(s) 179, 615, 765, 831, 942
BfoI RGCGCY 1 cut(s) 726
BglI GCCNNNNNGGC 1 cut(s) 731
BglII AGATCT 2 cut(s) 140, 758
BisI GCNGC 5 cut(s) 155, 601, 841, 880, 1246
BlpI GCTNAGC 2 cut(s) 385, 471
BlsI GCNGC 5 cut(s) 156, 602, 842, 881, 1247
Bme1390I CCNGG 4 cut(s) 731, 876, 978, 985
Bme18I GGWCC 1 cut(s) 1266
BmgT120I GGNCC 6 cut(s) 147, 527, 891, 892, 1022, 1266
BmiI GGNNCC 4 cut(s) 724, 893, 982, 1267
BmrFI CCNGG 4 cut(s) 731, 876, 978, 985
BmsI GCATC 4 cut(s) 175, 263, 685, 814
BpmI CTGGAG 1 cut(s) 538
Bpu1102I GCTNAGC 2 cut(s) 385, 471
BpuEI CTTGAG 1 cut(s) 999
BpuMI CCSGG 1 cut(s) 985
BsaBI GATNNNNATC 2 cut(s) 321, 793
BsaHI GRCGYC 1 cut(s) 723
BsaJI CCNNGG 4 cut(s) 523, 648, 1133, 1207
BsaWI WCCGGW 3 cut(s) 286, 1073, 1290
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 791, 875, 1239
Bse118I RCCGGY 1 cut(s) 1290
Bse1I ACTGG 4 cut(s) 311, 371, 555, 1025
Bse3DI GCAATG 4 cut(s) 164, 222, 227, 889
Bse8I GATNNNNATC 2 cut(s) 321, 793
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 3 cut(s) 731, 876, 978
BseDI CCNNGG 4 cut(s) 523, 648, 1133, 1207
BseGI GGATG 7 cut(s) 278, 307, 499, 542, 805, 1129, 1277
BseJI GATNNNNATC 2 cut(s) 321, 793
BseLI CCNNNNNNNGG 4 cut(s) 132, 791, 875, 1239
BseMI GCAATG 4 cut(s) 164, 222, 227, 889
BseMII CTCAG 2 cut(s) 462, 858
BseNI ACTGG 4 cut(s) 311, 371, 555, 1025
BseSI GKGCMC 2 cut(s) 366, 895
BseXI GCAGC 5 cut(s) 141, 612, 852, 891, 1257
Bsh1236I CGCG 1 cut(s) 897
BshFI GGCC 6 cut(s) 149, 529, 769, 893, 1024, 1232
BshNI GGYRCC 1 cut(s) 722
BshTI ACCGGT 1 cut(s) 1290
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 5 cut(s) 287, 985, 1074, 1252, 1291
BsiWI CGTACG 1 cut(s) 962
BslI CCNNNNNNNGG 4 cut(s) 132, 791, 875, 1239
BsnI GGCC 6 cut(s) 149, 529, 769, 893, 1024, 1232
Bsp120I GGGCCC 1 cut(s) 891
Bsp1286I GDGCHC 4 cut(s) 9, 366, 895, 985
Bsp13I TCCGGA 1 cut(s) 286
Bsp1720I GCTNAGC 2 cut(s) 385, 471
Bsp19I CCATGG 2 cut(s) 648, 1133
BspACI CCGC 6 cut(s) 48, 60, 84, 686, 895, 996
BspANI GGCC 6 cut(s) 149, 529, 769, 893, 1024, 1232
BspCNI CTCAG 2 cut(s) 463, 857
BspEI TCCGGA 1 cut(s) 286
BspFNI CGCG 1 cut(s) 897
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 724, 893, 982, 1267
BspPI GGATC 4 cut(s) 330, 660, 802, 984
BspQI GCTCTTC 1 cut(s) 918
BspT107I GGYRCC 1 cut(s) 722
BsrDI GCAATG 4 cut(s) 164, 222, 227, 889
BsrFI RCCGGY 1 cut(s) 1290
BsrI ACTGG 4 cut(s) 311, 371, 555, 1025
BssAI RCCGGY 1 cut(s) 1290
BssECI CCNNGG 4 cut(s) 523, 648, 1133, 1207
BssNI GRCGYC 1 cut(s) 723
BssSI CACGAG 1 cut(s) 79
BssT1I CCWWGG 4 cut(s) 523, 648, 1133, 1207
Bst2BI CACGAG 1 cut(s) 79
Bst2UI CCWGG 3 cut(s) 731, 876, 978
Bst4CI ACNGT 2 cut(s) 668, 827
Bst6I CTCTTC 2 cut(s) 15, 918
BstACI GRCGYC 1 cut(s) 723
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 4 cut(s) 459, 721, 838, 895
BstDEI CTNAG 3 cut(s) 385, 471, 844
BstDSI CCRYGG 2 cut(s) 648, 1133
BstF5I GGATG 7 cut(s) 278, 307, 499, 542, 805, 1129, 1277
BstFNI CGCG 1 cut(s) 897
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 2 cut(s) 725, 776
BstMWI GCNNNNNNNGC 7 cut(s) 81, 108, 163, 467, 644, 731, 917
BstNI CCWGG 3 cut(s) 731, 876, 978
BstNSI RCATGY 2 cut(s) 461, 1153
BstSCI CCNGG 4 cut(s) 729, 874, 976, 983
BstSLI GKGCMC 2 cut(s) 366, 895
BstUI CGCG 1 cut(s) 897
BstV1I GCAGC 5 cut(s) 141, 612, 852, 891, 1257
BstX2I RGATCY 6 cut(s) 140, 322, 652, 758, 794, 989
BstXI CCANNNNNNTGG 1 cut(s) 1052
BstYI RGATCY 6 cut(s) 140, 322, 652, 758, 794, 989
BsuRI GGCC 6 cut(s) 149, 529, 769, 893, 1024, 1232
BtgI CCRYGG 2 cut(s) 648, 1133
BtgZI GCGATG 2 cut(s) 57, 69
BtsCI GGATG 7 cut(s) 278, 307, 499, 542, 805, 1129, 1277
BtsI GCAGTG 2 cut(s) 19, 1222
BtsIMutI CAGTG 6 cut(s) 19, 364, 562, 832, 1032, 1222
Cac8I GCNNGC 4 cut(s) 459, 721, 838, 895
CciI TCATGA 1 cut(s) 439
CfoI GCGC 2 cut(s) 725, 776
Cfr10I RCCGGY 1 cut(s) 1290
Cfr13I GGNCC 6 cut(s) 147, 527, 891, 892, 1022, 1266
Csp6I GTAC 2 cut(s) 611, 963
CspAI ACCGGT 1 cut(s) 1290
CviAII CATG 9 cut(s) 298, 314, 440, 458, 649, 958, 1134, 1150, 1262
CviQI GTAC 2 cut(s) 611, 963
DdeI CTNAG 3 cut(s) 385, 471, 844
DinI GGCGCC 1 cut(s) 724
EaeI YGGCCR 1 cut(s) 1230
Eam1104I CTCTTC 2 cut(s) 15, 918
EarI CTCTTC 2 cut(s) 15, 918
Eco130I CCWWGG 4 cut(s) 523, 648, 1133, 1207
Eco24I GRGCYC 3 cut(s) 9, 895, 985
Eco47I GGWCC 1 cut(s) 1266
Eco57I CTGAAG 2 cut(s) 720, 899
EcoRII CCWGG 3 cut(s) 729, 874, 976
EcoT14I CCWWGG 4 cut(s) 523, 648, 1133, 1207
EcoT22I ATGCAT 1 cut(s) 807
EcoT38I GRGCYC 3 cut(s) 9, 895, 985
EgeI GGCGCC 1 cut(s) 724
EheI GGCGCC 1 cut(s) 724
ErhI CCWWGG 4 cut(s) 523, 648, 1133, 1207
FaeI CATG 9 cut(s) 301, 317, 443, 461, 652, 961, 1137, 1153, 1265
FatI CATG 9 cut(s) 297, 313, 439, 457, 648, 957, 1133, 1149, 1261
FauI CCCGC 2 cut(s) 693, 902
FblI GTMKAC 1 cut(s) 1176
Fnu4HI GCNGC 5 cut(s) 155, 601, 841, 880, 1246
FokI GGATG 7 cut(s) 285, 314, 486, 529, 792, 1116, 1264
FriOI GRGCYC 3 cut(s) 9, 895, 985
Fsp4HI GCNGC 5 cut(s) 155, 601, 841, 880, 1246
FspBI CTAG 5 cut(s) 179, 615, 765, 831, 942
GlaI GCGC 2 cut(s) 724, 775
GluI GCNGC 5 cut(s) 155, 601, 841, 880, 1246
GsuI CTGGAG 1 cut(s) 538
HaeII RGCGCY 1 cut(s) 726
HaeIII GGCC 6 cut(s) 149, 529, 769, 893, 1024, 1232
HapII CCGG 5 cut(s) 287, 985, 1074, 1252, 1291
HhaI GCGC 2 cut(s) 725, 776
Hin1I GRCGYC 1 cut(s) 723
Hin1II CATG 9 cut(s) 301, 317, 443, 461, 652, 961, 1137, 1153, 1265
Hin6I GCGC 2 cut(s) 723, 774
HinP1I GCGC 2 cut(s) 723, 774
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 4 cut(s) 862, 903, 1168, 1226
HpaII CCGG 5 cut(s) 287, 985, 1074, 1252, 1291
HphI GGTGA 3 cut(s) 417, 527, 942
Hpy166II GTNNAC 3 cut(s) 34, 364, 1177
Hpy188I TCNGA 7 cut(s) 237, 346, 571, 1042, 1225, 1238, 1270
Hpy188III TCNNGA 5 cut(s) 179, 287, 440, 792, 1162
Hpy8I GTNNAC 3 cut(s) 34, 364, 1177
Hpy99I CGWCG 2 cut(s) 125, 859
HpyAV CCTTC 4 cut(s) 208, 407, 549, 1164
HpyCH4III ACNGT 2 cut(s) 668, 827
HpyCH4V TGCA 6 cut(s) 157, 186, 220, 364, 805, 887
HpyF10VI GCNNNNNNNGC 7 cut(s) 81, 108, 163, 467, 644, 731, 917
HpyF3I CTNAG 3 cut(s) 385, 471, 844
Hsp92I GRCGYC 1 cut(s) 723
Hsp92II CATG 9 cut(s) 301, 317, 443, 461, 652, 961, 1137, 1153, 1265
HspAI GCGC 2 cut(s) 723, 774
KasI GGCGCC 1 cut(s) 722
Kpn2I TCCGGA 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 4 cut(s) 597, 673, 980, 1242
Lsp1109I GCAGC 5 cut(s) 141, 612, 852, 891, 1257
LweI GCATC 4 cut(s) 175, 263, 685, 814
MaeI CTAG 5 cut(s) 179, 615, 765, 831, 942
MaeIII GTNAC 4 cut(s) 748, 821, 847, 1088
MboII GAAGA 4 cut(s) 32, 457, 647, 905
MflI RGATCY 6 cut(s) 140, 322, 652, 758, 794, 989
MhlI GDGCHC 4 cut(s) 9, 366, 895, 985
MluCI AATT 7 cut(s) 170, 229, 240, 290, 443, 531, 946
Mly113I GGCGCC 1 cut(s) 723
MlyI GAGTC 2 cut(s) 912, 1220
MmeI TCCRAC 2 cut(s) 215, 603
Mph1103I ATGCAT 1 cut(s) 807
MroI TCCGGA 1 cut(s) 286
MseI TTAA 2 cut(s) 335, 1203
MspA1I CMGCKG 2 cut(s) 482, 996
MspI CCGG 5 cut(s) 287, 985, 1074, 1252, 1291
MspR9I CCNGG 4 cut(s) 731, 876, 978, 985
MvaI CCWGG 3 cut(s) 731, 876, 978
MvnI CGCG 1 cut(s) 897
MwoI GCNNNNNNNGC 7 cut(s) 81, 108, 163, 467, 644, 731, 917
NarI GGCGCC 1 cut(s) 723
NciI CCSGG 1 cut(s) 985
NcoI CCATGG 2 cut(s) 648, 1133
NlaIII CATG 9 cut(s) 301, 317, 443, 461, 652, 961, 1137, 1153, 1265
NlaIV GGNNCC 4 cut(s) 724, 893, 982, 1267
NmeAIII GCCGAG 2 cut(s) 795, 1208
NmuCI GTSAC 2 cut(s) 821, 847
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 2 cut(s) 461, 1153
PaeI GCATGC 1 cut(s) 461
PagI TCATGA 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 918
PfeI GAWTC 2 cut(s) 862, 1168
Pfl23II CGTACG 1 cut(s) 962
PflFI GACNNNGTC 1 cut(s) 902
PfoI TCCNGGA 1 cut(s) 976
PinAI ACCGGT 1 cut(s) 1290
PkrI GCNGC 5 cut(s) 156, 602, 842, 881, 1247
PleI GAGTC 2 cut(s) 911, 1220
PluTI GGCGCC 1 cut(s) 726
PpsI GAGTC 2 cut(s) 911, 1220
Psp6I CCWGG 3 cut(s) 729, 874, 976
PspGI CCWGG 3 cut(s) 729, 874, 976
PspLI CGTACG 1 cut(s) 962
PspN4I GGNNCC 4 cut(s) 724, 893, 982, 1267
PspOMI GGGCCC 1 cut(s) 891
PspPI GGNCC 6 cut(s) 147, 527, 891, 892, 1022, 1266
PsuI RGATCY 6 cut(s) 140, 322, 652, 758, 794, 989
PsyI GACNNNGTC 1 cut(s) 902
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 612, 964
RsaNI GTAC 2 cut(s) 611, 963
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 2 cut(s) 335, 1203
SatI GCNGC 5 cut(s) 155, 601, 841, 880, 1246
Sau96I GGNCC 6 cut(s) 147, 527, 891, 892, 1022, 1266
SchI GAGTC 2 cut(s) 912, 1220
ScrFI CCNGG 4 cut(s) 731, 876, 978, 985
SduI GDGCHC 4 cut(s) 9, 366, 895, 985
SfaNI GCATC 4 cut(s) 175, 263, 685, 814
SfoI GGCGCC 1 cut(s) 724
SinI GGWCC 1 cut(s) 1266
SmlI CTYRAG 1 cut(s) 1014
SmoI CTYRAG 1 cut(s) 1014
SphI GCATGC 1 cut(s) 461
Sse9I AATT 7 cut(s) 170, 229, 240, 290, 443, 531, 946
SsiI CCGC 6 cut(s) 48, 60, 84, 686, 895, 996
SspDI GGCGCC 1 cut(s) 722
SspMI CTAG 5 cut(s) 179, 615, 765, 831, 942
StyD4I CCNGG 4 cut(s) 729, 874, 976, 983
StyI CCWWGG 4 cut(s) 523, 648, 1133, 1207
TaaI ACNGT 2 cut(s) 668, 827
TaqI TCGA 3 cut(s) 104, 857, 1163
TaqII GACCGA 2 cut(s) 809, 1194
TasI AATT 7 cut(s) 170, 229, 240, 290, 443, 531, 946
TfiI GAWTC 2 cut(s) 862, 1168
Tru1I TTAA 2 cut(s) 335, 1203
Tru9I TTAA 2 cut(s) 335, 1203
TscAI CASTG 6 cut(s) 19, 371, 562, 832, 1032, 1222
TseFI GTSAC 2 cut(s) 821, 847
TseI GCWGC 5 cut(s) 154, 600, 840, 879, 1245
Tsp45I GTSAC 2 cut(s) 821, 847
TspGWI ACGGA 1 cut(s) 1101
TspRI CASTG 6 cut(s) 19, 371, 562, 832, 1032, 1222
Tth111I GACNNNGTC 1 cut(s) 902
VneI GTGCAC 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 1266
XapI RAATTY 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 2 cut(s) 461, 1153
XcmI CCANNNNNNNNNTGG 1 cut(s) 1214
XmiI GTMKAC 1 cut(s) 1176
XspI CTAG 5 cut(s) 179, 615, 765, 831, 942
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.