Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005970

Physical Location & Seq

Genomic Coordinates Forward (+)

4941963 .. 4948898

Gene Structure 6936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCAATATTTTCTCCTCCTATGTGTTGAACCTTTTATTTTGGCCATCAACAGGGAAGGAGAGTTCTCACCAACTTCATATCATGATTTACTTGGACAGCATGCCATCTTTGCTGAGCATACAGCTGTATCATCTGCTGCTCATCCTTGCCCATATATTGCTTACTTTGGACCAATCCACCCCTCATCCTCTAATTCAAGTGGAAGTGTTTCAGAAGCTTCCAACTTTAACCATCATTGGACTGGCACATCTGTACCTAGTGAACTACCAAGCTCCTATGCTTTTCCTGCCATGGATCTTCATTACCACAGTTGGGAGCACCATTCCCCTCCATTCTCTACAACCAGCAGTCATATTGGTGGGGTTGACCAAACTTCAATCCCATCTGTGACTCAAAGATCTGCTAGGCCGAGTTCGGAGATACCAAGATCAGGATCTTTCATGCATCCCTTTCTTGTCGGTCACAGTTCTAGTGCTAGAGCCGGCAGCTCAGTCACATCCTCAATGATTCCTCCTTATCCAGGCAGCAATGCTCGGGCTCGCGACAGAGTCCAAGCTCTTCAGGCATACTACCAACAGCAACAACCTAGCAATTCACCAACCATGCGCACACCCATGATTTCAGGAGCCCGAAGATCAAGCAGTCAAAGAGGTTTGCCTCAAGTAGGGCCAGTGGCTTCATCATCAGATCAAAATGGTGGTTTCTATTTTTACCCTTCTGGTTCATCAGGCCGTAACTACCAAGAAGCCGAAAATCCTTTATCTACTCGTTTTCATGCGTGGGAAAGAGATCACCTGCCTTCATTCTCGATGAATCAGGTTGACCGTGATCCTGGTTGGGCTGCTCTTCACCAGGCTGGTAGTGGATCAGAGTCGGCAATCAGGGGAAACAGCTTACGGCGGCATGCATCTGAGAGGACATCTTCACAAAATCGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

313

Amino Acids

34.11

Weight (kDa)

7.35

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05545
fragaria_vesca	FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620
malus_domestica	MD04G1199600.v1.1 MD08G1111000.v1.1 MD12G1212400.v1.1
prunus_persica	Prupe.6G320100_v2.0.a1 Prupe.6G320100_v2.0.a1
pyrus_communis	pycom04g17630 pycom12g19860
rosa_chinensis	RchiOBHm_Chr3g0455821
rosa_laevigata	RLG00000025329
rosa_multiflora	Rmu_ssc0000046.1_g000008 Rmu_ssc0000046.1_g000018
rosa_roxburghii	Rroxscaffold_6G00423430 Rroxscaffold_6G00423930
rosa_rugosa	Rorug03G0010900 Rorug03G0011000
rosa_samantha	Rh3AG069800 Rh3BG072400 Rh3CG070600 Rh3DG073100
rosa_wichuraiana	Rw3G005670 Rw3G006020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	804
Acc16I	TGCGCA	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	804
AccII	CGCG	1 cut(s)	543
AciI	CCGC	1 cut(s)	901
AclWI	GGATC	4 cut(s)	303, 442, 824, 874
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	5 cut(s)	51, 313, 431, 521, 665
AgsI	TTSAA	3 cut(s)	29, 198, 378
AjnI	CCWGG	3 cut(s)	520, 832, 852
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	6 cut(s)	125, 218, 273, 489, 557, 894
AluI	AGCT	6 cut(s)	125, 218, 273, 489, 557, 894
Alw21I	GWGCWC	1 cut(s)	321
AlwI	GGATC	4 cut(s)	303, 442, 824, 874
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	4 cut(s)	42, 407, 668, 730
ApeKI	GCWGC	4 cut(s)	137, 486, 525, 842
Asp700I	GAANNNNTTC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	2 cut(s)	170, 668
AsuHPI	GGTGA	4 cut(s)	60, 588, 785, 842
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	170
BaeI	ACNNNNGTAYC	4 cut(s)	111, 144, 237, 270
BalI	TGGCCA	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	541, 631
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	4 cut(s)	124, 498, 537, 829
BccI	CCATC	4 cut(s)	53, 113, 240, 391
BceAI	ACGGC	2 cut(s)	717, 914
BciT130I	CCWGG	3 cut(s)	522, 834, 854
BfaI	CTAG	5 cut(s)	258, 405, 471, 477, 588
BfuAI	ACCTGC	1 cut(s)	804
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	5 cut(s)	138, 487, 526, 843, 902
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	5 cut(s)	139, 488, 527, 844, 903
Bme1390I	CCNGG	3 cut(s)	522, 834, 854
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	170, 668
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	3 cut(s)	522, 834, 854
BmsI	GCATC	2 cut(s)	454, 917
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 313, 431, 521, 665
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	247, 671
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	1 cut(s)	433
BseBI	CCWGG	3 cut(s)	522, 834, 854
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	4 cut(s)	142, 185, 445, 497
BseJI	GATNNNNATC	1 cut(s)	433
BseLI	CCNNNNNNNGG	5 cut(s)	51, 313, 431, 521, 665
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	105, 504, 903
BseNI	ACTGG	2 cut(s)	247, 671
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	4 cut(s)	124, 498, 537, 829
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	4 cut(s)	44, 409, 670, 732
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	483
BslI	CCNNNNNNNGG	5 cut(s)	51, 313, 431, 521, 665
BsnI	GGCC	4 cut(s)	44, 409, 670, 732
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	3 cut(s)	321, 541, 631
Bsp143I	GATC	9 cut(s)	295, 398, 428, 434, 635, 688, 790, 829, 866
Bsp1720I	GCTNAGC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	291
Bsp68I	TCGCGA	1 cut(s)	543
BspACI	CCGC	1 cut(s)	901
BspANI	GGCC	4 cut(s)	44, 409, 670, 732
BspCNI	CTCAG	3 cut(s)	106, 503, 904
BspFNI	CGCG	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	628
BspMI	ACCTGC	1 cut(s)	804
BspPI	GGATC	4 cut(s)	303, 442, 824, 874
BspQI	GCTCTTC	2 cut(s)	564, 852
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	247, 671
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	9 cut(s)	295, 398, 428, 434, 635, 688, 790, 829, 866
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	3 cut(s)	522, 834, 854
Bst4CI	ACNGT	3 cut(s)	311, 467, 827
Bst6I	CTCTTC	2 cut(s)	564, 852
BstC8I	GCNNGC	4 cut(s)	102, 484, 541, 906
BstDEI	CTNAG	3 cut(s)	114, 490, 912
BstDSI	CCRYGG	1 cut(s)	291
BstENI	CCTNNNNNAGG	2 cut(s)	519, 663
BstF5I	GGATG	4 cut(s)	142, 185, 445, 497
BstFNI	CGCG	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	9 cut(s)	298, 401, 431, 437, 638, 691, 793, 832, 869
BstMBI	GATC	9 cut(s)	295, 398, 428, 434, 635, 688, 790, 829, 866
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 287, 563
BstNI	CCWGG	3 cut(s)	522, 834, 854
BstNSI	RCATGY	2 cut(s)	104, 908
BstSCI	CCNGG	3 cut(s)	520, 832, 852
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	4 cut(s)	124, 498, 537, 829
BstX2I	RGATCY	3 cut(s)	295, 398, 434
BstYI	RGATCY	3 cut(s)	295, 398, 434
BsuRI	GGCC	4 cut(s)	44, 409, 670, 732
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	4 cut(s)	142, 185, 445, 497
BtsIMutI	CAGTG	1 cut(s)	678
BtuMI	TCGCGA	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	804
Cac8I	GCNNGC	4 cut(s)	102, 484, 541, 906
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	170, 668
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	8 cut(s)	83, 101, 292, 442, 604, 616, 776, 905
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	3 cut(s)	114, 490, 912
DpnI	GATC	9 cut(s)	297, 400, 430, 436, 637, 690, 792, 831, 868
DpnII	GATC	9 cut(s)	295, 398, 428, 434, 635, 688, 790, 829, 866
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	564, 852
EarI	CTCTTC	2 cut(s)	564, 852
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	2 cut(s)	541, 631
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	534
EcoNI	CCTNNNNNAGG	2 cut(s)	519, 663
EcoRII	CCWGG	3 cut(s)	520, 832, 852
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	2 cut(s)	447, 910
EcoT38I	GRGCYC	2 cut(s)	541, 631
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	8 cut(s)	86, 104, 295, 445, 607, 619, 779, 908
FatI	CATG	8 cut(s)	82, 100, 291, 441, 603, 615, 775, 904
Fnu4HI	GCNGC	5 cut(s)	138, 487, 526, 843, 902
FokI	GGATG	4 cut(s)	129, 172, 432, 484
FriOI	GRGCYC	2 cut(s)	541, 631
Fsp4HI	GCNGC	5 cut(s)	138, 487, 526, 843, 902
FspAI	RTGCGCAY	1 cut(s)	608
FspBI	CTAG	5 cut(s)	258, 405, 471, 477, 588
FspI	TGCGCA	1 cut(s)	608
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	5 cut(s)	138, 487, 526, 843, 902
HaeIII	GGCC	4 cut(s)	44, 409, 670, 732
HapII	CCGG	1 cut(s)	483
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	8 cut(s)	86, 104, 295, 445, 607, 619, 779, 908
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HincII	GTYRAC	2 cut(s)	367, 823
HindII	GTYRAC	2 cut(s)	367, 823
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	5 cut(s)	391, 508, 549, 814, 872
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	4 cut(s)	60, 588, 785, 842
Hpy166II	GTNNAC	3 cut(s)	263, 367, 823
Hpy188I	TCNGA	5 cut(s)	214, 418, 688, 871, 913
Hpy188III	TCNNGA	5 cut(s)	83, 432, 542, 624, 808
Hpy8I	GTNNAC	3 cut(s)	263, 367, 823
HpyAV	CCTTC	3 cut(s)	50, 726, 810
HpyCH4III	ACNGT	3 cut(s)	311, 467, 827
HpyCH4V	TGCA	3 cut(s)	4, 445, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 287, 563
HpyF3I	CTNAG	3 cut(s)	114, 490, 912
Hsp92II	CATG	8 cut(s)	86, 104, 295, 445, 607, 619, 779, 908
HspAI	GCGC	1 cut(s)	607
KroI	GCCGGC	1 cut(s)	482
KroNI	GCCGGC	1 cut(s)	484
Kzo9I	GATC	9 cut(s)	295, 398, 428, 434, 635, 688, 790, 829, 866
LguI	GCTCTTC	2 cut(s)	564, 852
LmnI	GCTCC	3 cut(s)	278, 316, 626
Lsp1109I	GCAGC	4 cut(s)	124, 498, 537, 829
LweI	GCATC	2 cut(s)	454, 917
MaeI	CTAG	5 cut(s)	258, 405, 471, 477, 588
MaeIII	GTNAC	4 cut(s)	388, 461, 493, 734
MalI	GATC	9 cut(s)	297, 400, 430, 436, 637, 690, 792, 831, 868
MboI	GATC	9 cut(s)	295, 398, 428, 434, 635, 688, 790, 829, 866
MboII	GAAGA	5 cut(s)	290, 551, 645, 839, 915
MflI	RGATCY	3 cut(s)	295, 398, 434
MhlI	GDGCHC	3 cut(s)	321, 541, 631
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	2 cut(s)	193, 592
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	3 cut(s)	385, 558, 881
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	9 cut(s)	26, 193, 199, 339, 511, 522, 644, 669, 909
Mox20I	TGGCCA	1 cut(s)	44
Mph1103I	ATGCAT	2 cut(s)	447, 910
MroNI	GCCGGC	1 cut(s)	482
MroXI	GAANNNNTTC	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	357, 614
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	3 cut(s)	522, 834, 854
MvaI	CCWGG	3 cut(s)	522, 834, 854
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	3 cut(s)	110, 287, 563
NaeI	GCCGGC	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	9 cut(s)	295, 398, 428, 434, 635, 688, 790, 829, 866
NgoMIV	GCCGGC	1 cut(s)	482
NlaIII	CATG	8 cut(s)	86, 104, 295, 445, 607, 619, 779, 908
NlaIV	GGNNCC	1 cut(s)	628
NmeAIII	GCCGAG	1 cut(s)	435
NmuCI	GTSAC	3 cut(s)	388, 461, 493
NruI	TCGCGA	1 cut(s)	543
NsbI	TGCGCA	1 cut(s)	608
NsiI	ATGCAT	2 cut(s)	447, 910
NspI	RCATGY	2 cut(s)	104, 908
PaeI	GCATGC	2 cut(s)	104, 908
PagI	TCATGA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	804
PciSI	GCTCTTC	2 cut(s)	564, 852
PdiI	GCCGGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	508, 814
PflFI	GACNNNGTC	1 cut(s)	548
PkrI	GCNGC	5 cut(s)	139, 488, 527, 844, 903
PleI	GAGTC	3 cut(s)	385, 557, 880
PpsI	GAGTC	3 cut(s)	385, 557, 880
Psp6I	CCWGG	3 cut(s)	520, 832, 852
PspGI	CCWGG	3 cut(s)	520, 832, 852
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	2 cut(s)	170, 668
PsuI	RGATCY	3 cut(s)	295, 398, 434
PsyI	GACNNNGTC	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	125
RruI	TCGCGA	1 cut(s)	543
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	2 cut(s)	357, 614
SapI	GCTCTTC	2 cut(s)	564, 852
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	5 cut(s)	138, 487, 526, 843, 902
Sau3AI	GATC	9 cut(s)	295, 398, 428, 434, 635, 688, 790, 829, 866
Sau96I	GGNCC	2 cut(s)	170, 668
SchI	GAGTC	3 cut(s)	385, 558, 881
ScrFI	CCNGG	3 cut(s)	522, 834, 854
SduI	GDGCHC	3 cut(s)	321, 541, 631
SfaNI	GCATC	2 cut(s)	454, 917
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	357, 614
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
SphI	GCATGC	2 cut(s)	104, 908
Sse9I	AATT	2 cut(s)	193, 592
SsiI	CCGC	1 cut(s)	901
SspI	AATATT	1 cut(s)	8
SspMI	CTAG	5 cut(s)	258, 405, 471, 477, 588
StyD4I	CCNGG	3 cut(s)	520, 832, 852
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	311, 467, 827
TaqI	TCGA	1 cut(s)	809
TaqII	GACCGA	2 cut(s)	449, 924
TasI	AATT	2 cut(s)	193, 592
TauI	GCSGC	1 cut(s)	904
TfiI	GAWTC	2 cut(s)	508, 814
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	3 cut(s)	388, 461, 493
TseI	GCWGC	4 cut(s)	137, 486, 525, 842
Tsp45I	GTSAC	3 cut(s)	388, 461, 493
TspDTI	ATGAA	8 cut(s)	66, 290, 430, 669, 714, 764, 792, 827
TspRI	CASTG	1 cut(s)	678
Tth111I	GACNNNGTC	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	170
XagI	CCTNNNNNAGG	2 cut(s)	519, 663
XceI	RCATGY	2 cut(s)	104, 908
XcmI	CCANNNNNNNNNTGG	2 cut(s)	239, 860
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	5 cut(s)	258, 405, 471, 477, 588
Zsp2I	ATGCAT	2 cut(s)	447, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.