Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005970

Physical Location & Seq

Genomic Coordinates Reverse (-)

45218513 .. 45224853

Gene Structure 6341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGTCTGGGCAGCGATGAAGAGGTGGTTGTTGAAGAAAGCGATGGTGTTGGTGGCGATGGTGGTGGTGGTTGTGGAGGCAAGTCGTACGGTGGCTCTGTGTCCTGCTCGATTTGCCTTGAAGTCGTCGCCGATAATGGGGAGAGATCTTGGGCCAAGCTGCAATGTGGGCATGAATTTCATCTAGATTGCATTGGTTCGGCGTTTAATATAAAGGGCGCAATGCAATGCCCTAATTGTCGGAAGATCGAGAAAGGTCAATGGCTTTATGCTAATGGCTGCCGTTCATTTCCGGATTTTAGCATGGATGACTGGAACCATGATGAAGATCTGTATGATCTAAGTTATTCCGAAATGTCCTTTGGTGTTCACTGGTGTCCATTTGGTAGCTTAGCAAGACTTCCTTCATCATTTGAGGAAGGAGAGTTCTCACCAACTTCATATCATGATTTACTTGGACAGCATGCCATCTTTGCTGAGCATACAGCTGTATCATCTGCTGCTCATCCTTGCCCATATATTGCTTACTTTGGACCAATCCACCCCTCATCCTCTAATTCAAGTGGAAGTGTTTCAGAAGCTTCCAACTTTAACCATCATTGGACCGGCACATCTGTACCTAGTGAACTACCAAGCTCCTATGCTTTTCCTGCCATGGATCTTCATTACCACAGTTGGGAGCACCATTCCCCTCCATTCTCTACAACCAGCAGTCATATTGGTGGGGTTGACCAAACTTCAATCCCATCTGTGACTCAAAGATCTGCTAGGCCGAGTTCGGAGATAGCAAGATCAGGATCTTTCATGCATCCCTTTCTTGTTGGTCACAGTTCTAGTGCTAGAGCCGGCAGCTCAGTCACATCTTCAATGATTCCTCCTTATCCAGGCAGCAATGCTCGGGCTCGCGACAGAGTCCAAGCTCTTCAAGCATACTACCAACAGCAACAACCTAGCAATTCACCAACCATGCGCACACCTATGATTTCAGGAGCCCGAAGATCAAGCAGTCAAAGAGGTTTGCCTCAAGTAGGGCCAGTGGCTTCATCATCAGATCAAAATGGTGGTTTCTATTTTTACCCTTCTGGTTCATCAGGCCGTAACTACCAAGAAGCTGAAAATCCTTTATCTACTCGTTTTCATGCCTGGGAAAGAGATCACCTGCCTTCATTCTCGATGAATCAAGTTGACCGTGATCCTGGTTGGGCTACTCTTCACCAGGCTGGTAGTGGATCAGAGTCGGCAATCAGGGGAAACAGCTTACGGCGGCATGCATCTGAGAGGACATCTTCACAAAATCGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

434

Amino Acids

46.95

Weight (kDa)

5.9

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	35 - 81	1.2e-07	Ring finger domain
zf-C3HC4	PF00097	36 - 80	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	36 - 65	2.3e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05545
fragaria_vesca	FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620
malus_domestica	MD04G1199600.v1.1 MD08G1111000.v1.1 MD12G1212400.v1.1
prunus_persica	Prupe.6G320100_v2.0.a1 Prupe.6G320100_v2.0.a1
pyrus_communis	pycom04g17630 pycom12g19860
rosa_chinensis	RchiOBHm_Chr3g0455821
rosa_laevigata	RLG00000025329
rosa_multiflora	Rmu_ssc0000046.1_g000008 Rmu_ssc0000046.1_g000018
rosa_roxburghii	Rroxscaffold_6G00423430 Rroxscaffold_6G00423930
rosa_rugosa	Rorug03G0010900 Rorug03G0011000
rosa_samantha	Rh3AG069800 Rh3BG072400 Rh3CG070600 Rh3DG073100
rosa_wichuraiana	Rw3G005670 Rw3G006020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1167
Acc16I	TGCGCA	1 cut(s)	971
Acc36I	ACCTGC	1 cut(s)	1167
AccII	CGCG	1 cut(s)	906
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	1 cut(s)	1264
AclWI	GGATC	4 cut(s)	666, 805, 1187, 1237
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	2 cut(s)	89, 618
AfiI	CCNNNNNNNGG	4 cut(s)	138, 676, 884, 1028
AgsI	TTSAA	6 cut(s)	35, 122, 561, 741, 867, 926
AjnI	CCWGG	4 cut(s)	883, 1142, 1195, 1215
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
AluBI	AGCT	9 cut(s)	160, 390, 488, 581, 636, 852, 920, 1112, 1257
AluI	AGCT	9 cut(s)	160, 390, 488, 581, 636, 852, 920, 1112, 1257
Alw21I	GWGCWC	1 cut(s)	684
AlwI	GGATC	4 cut(s)	666, 805, 1187, 1237
Ama87I	CYCGRG	1 cut(s)	897
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	4 cut(s)	153, 770, 1031, 1093
ApeKI	GCWGC	6 cut(s)	12, 160, 279, 500, 849, 888
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	571
AspLEI	GCGC	2 cut(s)	221, 972
AspS9I	GGNCC	4 cut(s)	153, 533, 603, 1031
AsuHPI	GGTGA	4 cut(s)	423, 951, 1148, 1205
AvaI	CYCGRG	1 cut(s)	897
AvaII	GGWCC	2 cut(s)	533, 603
BaeI	ACNNNNGTAYC	4 cut(s)	474, 507, 600, 633
BanII	GRGCYC	2 cut(s)	904, 994
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	6 cut(s)	24, 147, 266, 487, 861, 900
BccI	CCATC	5 cut(s)	38, 53, 476, 603, 754
BceAI	ACGGC	3 cut(s)	267, 1080, 1277
BciT130I	CCWGG	4 cut(s)	885, 1144, 1197, 1217
BfaI	CTAG	6 cut(s)	185, 621, 768, 834, 840, 951
BfuAI	ACCTGC	1 cut(s)	1167
BglII	AGATCT	3 cut(s)	146, 328, 761
BisI	GCNGC	7 cut(s)	13, 161, 280, 501, 850, 889, 1265
BlpI	GCTNAGC	2 cut(s)	391, 477
BlsI	GCNGC	7 cut(s)	14, 162, 281, 502, 851, 890, 1266
Bme1390I	CCNGG	4 cut(s)	885, 1144, 1197, 1217
Bme18I	GGWCC	2 cut(s)	533, 603
BmeT110I	CYCGRG	1 cut(s)	897
BmgT120I	GGNCC	4 cut(s)	153, 533, 603, 1031
BmiI	GGNNCC	2 cut(s)	317, 991
BmrFI	CCNGG	4 cut(s)	885, 1144, 1197, 1217
BmsI	GCATC	2 cut(s)	817, 1280
Bpu1102I	GCTNAGC	2 cut(s)	391, 477
BpuEI	CTTGAG	1 cut(s)	1008
BsaBI	GATNNNNATC	2 cut(s)	327, 796
BsaJI	CCNNGG	2 cut(s)	654, 1143
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 676, 884, 1028
Bse118I	RCCGGY	2 cut(s)	605, 845
Bse1I	ACTGG	3 cut(s)	317, 377, 1034
Bse3DI	GCAATG	4 cut(s)	170, 228, 233, 898
Bse8I	GATNNNNATC	2 cut(s)	327, 796
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	4 cut(s)	885, 1144, 1197, 1217
BseDI	CCNNGG	2 cut(s)	654, 1143
BseGI	GGATG	4 cut(s)	313, 505, 548, 808
BseJI	GATNNNNATC	2 cut(s)	327, 796
BseLI	CCNNNNNNNGG	4 cut(s)	138, 676, 884, 1028
BseMI	GCAATG	4 cut(s)	170, 228, 233, 898
BseMII	CTCAG	3 cut(s)	468, 867, 1266
BseNI	ACTGG	3 cut(s)	317, 377, 1034
BseXI	GCAGC	6 cut(s)	24, 147, 266, 487, 861, 900
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	4 cut(s)	155, 772, 1033, 1095
BsiHKAI	GWGCWC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	897
BsiSI	CCGG	3 cut(s)	293, 606, 846
BsiWI	CGTACG	1 cut(s)	87
BslI	CCNNNNNNNGG	4 cut(s)	138, 676, 884, 1028
BsnI	GGCC	4 cut(s)	155, 772, 1033, 1095
BsoBI	CYCGRG	1 cut(s)	897
Bsp1286I	GDGCHC	3 cut(s)	684, 904, 994
Bsp13I	TCCGGA	1 cut(s)	292
Bsp1720I	GCTNAGC	2 cut(s)	391, 477
Bsp19I	CCATGG	1 cut(s)	654
Bsp68I	TCGCGA	1 cut(s)	906
BspACI	CCGC	1 cut(s)	1264
BspANI	GGCC	4 cut(s)	155, 772, 1033, 1095
BspCNI	CTCAG	3 cut(s)	469, 866, 1267
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	906
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	317, 991
BspMI	ACCTGC	1 cut(s)	1167
BspPI	GGATC	4 cut(s)	666, 805, 1187, 1237
BspQI	GCTCTTC	1 cut(s)	927
BsrDI	GCAATG	4 cut(s)	170, 228, 233, 898
BsrFI	RCCGGY	2 cut(s)	605, 845
BsrI	ACTGG	3 cut(s)	317, 377, 1034
BssAI	RCCGGY	2 cut(s)	605, 845
BssECI	CCNNGG	2 cut(s)	654, 1143
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	4 cut(s)	885, 1144, 1197, 1217
Bst4CI	ACNGT	4 cut(s)	92, 674, 830, 1190
Bst6I	CTCTTC	3 cut(s)	15, 927, 1215
BstC8I	GCNNGC	4 cut(s)	465, 847, 904, 1269
BstDEI	CTNAG	5 cut(s)	341, 391, 477, 853, 1275
BstDSI	CCRYGG	1 cut(s)	654
BstENI	CCTNNNNNAGG	2 cut(s)	882, 1026
BstF5I	GGATG	4 cut(s)	313, 505, 548, 808
BstFNI	CGCG	1 cut(s)	906
BstHHI	GCGC	2 cut(s)	221, 972
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 169, 473, 650, 926
BstNI	CCWGG	4 cut(s)	885, 1144, 1197, 1217
BstNSI	RCATGY	2 cut(s)	467, 1271
BstSCI	CCNGG	4 cut(s)	883, 1142, 1195, 1215
BstUI	CGCG	1 cut(s)	906
BstV1I	GCAGC	6 cut(s)	24, 147, 266, 487, 861, 900
BstX2I	RGATCY	5 cut(s)	146, 328, 658, 761, 797
BstYI	RGATCY	5 cut(s)	146, 328, 658, 761, 797
BsuRI	GGCC	4 cut(s)	155, 772, 1033, 1095
BtgI	CCRYGG	1 cut(s)	654
BtgZI	GCGATG	3 cut(s)	30, 57, 72
BtsCI	GGATG	4 cut(s)	313, 505, 548, 808
BtsIMutI	CAGTG	2 cut(s)	370, 1041
BtuMI	TCGCGA	1 cut(s)	906
BveI	ACCTGC	1 cut(s)	1167
Cac8I	GCNNGC	4 cut(s)	465, 847, 904, 1269
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	2 cut(s)	221, 972
Cfr10I	RCCGGY	2 cut(s)	605, 845
Cfr13I	GGNCC	4 cut(s)	153, 533, 603, 1031
Csp6I	GTAC	2 cut(s)	88, 617
CviQI	GTAC	2 cut(s)	88, 617
DdeI	CTNAG	5 cut(s)	341, 391, 477, 853, 1275
Eam1104I	CTCTTC	3 cut(s)	15, 927, 1215
EarI	CTCTTC	3 cut(s)	15, 927, 1215
Eco130I	CCWWGG	1 cut(s)	654
Eco24I	GRGCYC	2 cut(s)	904, 994
Eco47I	GGWCC	2 cut(s)	533, 603
Eco88I	CYCGRG	1 cut(s)	897
EcoNI	CCTNNNNNAGG	2 cut(s)	882, 1026
EcoRII	CCWGG	4 cut(s)	883, 1142, 1195, 1215
EcoT14I	CCWWGG	1 cut(s)	654
EcoT22I	ATGCAT	2 cut(s)	810, 1273
EcoT38I	GRGCYC	2 cut(s)	904, 994
ErhI	CCWWGG	1 cut(s)	654
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
Fnu4HI	GCNGC	7 cut(s)	13, 161, 280, 501, 850, 889, 1265
FokI	GGATG	4 cut(s)	320, 492, 535, 795
FriOI	GRGCYC	2 cut(s)	904, 994
Fsp4HI	GCNGC	7 cut(s)	13, 161, 280, 501, 850, 889, 1265
FspAI	RTGCGCAY	1 cut(s)	971
FspBI	CTAG	6 cut(s)	185, 621, 768, 834, 840, 951
FspI	TGCGCA	1 cut(s)	971
GlaI	GCGC	2 cut(s)	220, 971
GluI	GCNGC	7 cut(s)	13, 161, 280, 501, 850, 889, 1265
HaeIII	GGCC	4 cut(s)	155, 772, 1033, 1095
HapII	CCGG	3 cut(s)	293, 606, 846
HhaI	GCGC	2 cut(s)	221, 972
Hin6I	GCGC	2 cut(s)	219, 970
HinP1I	GCGC	2 cut(s)	219, 970
HincII	GTYRAC	2 cut(s)	730, 1186
HindII	GTYRAC	2 cut(s)	730, 1186
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	5 cut(s)	754, 871, 912, 1177, 1235
HpaII	CCGG	3 cut(s)	293, 606, 846
HphI	GGTGA	4 cut(s)	423, 951, 1148, 1205
Hpy166II	GTNNAC	4 cut(s)	370, 626, 730, 1186
Hpy188I	TCNGA	7 cut(s)	243, 352, 577, 781, 1051, 1234, 1276
Hpy188III	TCNNGA	8 cut(s)	185, 250, 293, 446, 795, 905, 987, 1171
Hpy8I	GTNNAC	4 cut(s)	370, 626, 730, 1186
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	413, 414, 1089, 1173
HpyCH4III	ACNGT	4 cut(s)	92, 674, 830, 1190
HpyCH4V	TGCA	5 cut(s)	163, 192, 226, 808, 1271
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 169, 473, 650, 926
HpyF3I	CTNAG	5 cut(s)	341, 391, 477, 853, 1275
HspAI	GCGC	2 cut(s)	219, 970
Kpn2I	TCCGGA	1 cut(s)	292
KroI	GCCGGC	1 cut(s)	845
KroNI	GCCGGC	1 cut(s)	847
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	3 cut(s)	641, 679, 989
Lsp1109I	GCAGC	6 cut(s)	24, 147, 266, 487, 861, 900
LweI	GCATC	2 cut(s)	817, 1280
MaeI	CTAG	6 cut(s)	185, 621, 768, 834, 840, 951
MaeIII	GTNAC	4 cut(s)	751, 824, 856, 1097
MflI	RGATCY	5 cut(s)	146, 328, 658, 761, 797
MhlI	GDGCHC	3 cut(s)	684, 904, 994
MluCI	AATT	4 cut(s)	176, 235, 556, 955
MlyI	GAGTC	3 cut(s)	748, 921, 1244
MmeI	TCCRAC	2 cut(s)	221, 609
Mph1103I	ATGCAT	2 cut(s)	810, 1273
MroI	TCCGGA	1 cut(s)	292
MroNI	GCCGGC	1 cut(s)	845
MroXI	GAANNNNTTC	1 cut(s)	571
MseI	TTAA	2 cut(s)	207, 591
MslI	CAYNNNNRTG	2 cut(s)	720, 977
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	3 cut(s)	293, 606, 846
MspR9I	CCNGG	4 cut(s)	885, 1144, 1197, 1217
MvaI	CCWGG	4 cut(s)	885, 1144, 1197, 1217
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	5 cut(s)	114, 169, 473, 650, 926
NaeI	GCCGGC	1 cut(s)	847
NcoI	CCATGG	1 cut(s)	654
NgoMIV	GCCGGC	1 cut(s)	845
NlaIV	GGNNCC	2 cut(s)	317, 991
NmeAIII	GCCGAG	1 cut(s)	798
NmuCI	GTSAC	3 cut(s)	751, 824, 856
NruI	TCGCGA	1 cut(s)	906
NsbI	TGCGCA	1 cut(s)	971
NsiI	ATGCAT	2 cut(s)	810, 1273
NspI	RCATGY	2 cut(s)	467, 1271
PaeI	GCATGC	2 cut(s)	467, 1271
PagI	TCATGA	1 cut(s)	445
PaqCI	CACCTGC	1 cut(s)	1167
PciSI	GCTCTTC	1 cut(s)	927
PdiI	GCCGGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	871, 1177
Pfl23II	CGTACG	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	911
PkrI	GCNGC	7 cut(s)	14, 162, 281, 502, 851, 890, 1266
PleI	GAGTC	3 cut(s)	748, 920, 1243
PpsI	GAGTC	3 cut(s)	748, 920, 1243
Psp6I	CCWGG	4 cut(s)	883, 1142, 1195, 1215
PspGI	CCWGG	4 cut(s)	883, 1142, 1195, 1215
PspLI	CGTACG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	317, 991
PspPI	GGNCC	4 cut(s)	153, 533, 603, 1031
PsuI	RGATCY	5 cut(s)	146, 328, 658, 761, 797
PsyI	GACNNNGTC	1 cut(s)	911
PvuII	CAGCTG	1 cut(s)	488
RruI	TCGCGA	1 cut(s)	906
RsaI	GTAC	2 cut(s)	89, 618
RsaNI	GTAC	2 cut(s)	88, 617
RseI	CAYNNNNRTG	2 cut(s)	720, 977
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	2 cut(s)	207, 591
SatI	GCNGC	7 cut(s)	13, 161, 280, 501, 850, 889, 1265
Sau96I	GGNCC	4 cut(s)	153, 533, 603, 1031
SchI	GAGTC	3 cut(s)	748, 921, 1244
ScrFI	CCNGG	4 cut(s)	885, 1144, 1197, 1217
SduI	GDGCHC	3 cut(s)	684, 904, 994
SfaNI	GCATC	2 cut(s)	817, 1280
SinI	GGWCC	2 cut(s)	533, 603
SmiMI	CAYNNNNRTG	2 cut(s)	720, 977
SmlI	CTYRAG	1 cut(s)	1023
SmoI	CTYRAG	1 cut(s)	1023
SphI	GCATGC	2 cut(s)	467, 1271
Sse9I	AATT	4 cut(s)	176, 235, 556, 955
SsiI	CCGC	1 cut(s)	1264
SspMI	CTAG	6 cut(s)	185, 621, 768, 834, 840, 951
StyD4I	CCNGG	4 cut(s)	883, 1142, 1195, 1215
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	4 cut(s)	92, 674, 830, 1190
TaqI	TCGA	3 cut(s)	110, 249, 1172
TaqII	GACCGA	1 cut(s)	1287
TasI	AATT	4 cut(s)	176, 235, 556, 955
TauI	GCSGC	1 cut(s)	1267
TfiI	GAWTC	2 cut(s)	871, 1177
Tru1I	TTAA	2 cut(s)	207, 591
Tru9I	TTAA	2 cut(s)	207, 591
TscAI	CASTG	2 cut(s)	377, 1041
TseFI	GTSAC	3 cut(s)	751, 824, 856
TseI	GCWGC	6 cut(s)	12, 160, 279, 500, 849, 888
Tsp45I	GTSAC	3 cut(s)	751, 824, 856
TspRI	CASTG	2 cut(s)	377, 1041
Tth111I	GACNNNGTC	1 cut(s)	911
VpaK11BI	GGWCC	2 cut(s)	533, 603
XagI	CCTNNNNNAGG	2 cut(s)	882, 1026
XapI	RAATTY	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	2 cut(s)	467, 1271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1223
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	6 cut(s)	185, 621, 768, 834, 840, 951
Zsp2I	ATGCAT	2 cut(s)	810, 1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.