Rorug03G0010900

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005970
Physical Location & Seq
Forward (+)
834486 .. 835310
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0010900.1

Sequence Viewer

Length: 825 bp
ATGGCTCAGGACGCTGATTGTAACAATGCGAATGGCTTCCTTCATGAACTCGAGGGCATCCTCAGCCTCCTCATGCTCATCATTTTCACTGTTTTTGCTGCTCTCATGATTATCCTCTTCACACGACCCTACATTGCTAATTCTGACATTACTCATGCTTCGCTTGCCGAGTTCAACTTCAGTACCCCGACCACCACCAGCAATTTCAGTGCCACTATTCTTCACTACAAGCTTAATCTCAACATCGCAGTCGGAAACCCAAACGAAAACTACGGCATCTACCACGACAAAGTTCAAATGCTGGCTTATTATAAGAAGCAGAGGTTTGGCATGGCGAATTTGAGCTCTTTTTACCAAGGGAAGAGGAACATAACTGAAATGACACTGCCGTTGAAAGGACAACAAGTGATGATTTTTGATGGGATTGAGGATCTTTGCAAGCTTAAGCATCGCGACGATGGAGCTGATTACGATATTGTTGTTGAGCTCTATCGTCAAAACAAGTACCAAGCCACTGCGTCAGCTATGGGTAGGTTGATTCGGCCGAGTTGGGAAGATAAGTCCAAGATGACATGTTACTTGGAAGTTCCTTTGATCAGTGGTTACAAGAATAAAGGAGCTCGATCTGCCATGTGCTATGAAGATCACTTTGATGATGAGCTATACTTCCATTTTGTTTTTCTTTGTTTACTGGAGTTCCACTTGGTTATATTGGCTGTAGTGTTGGTTTTGATTCTTTTGGGGGCTTCTGCCGAGGCCGAAGAGCAGGGTACTGCAGTACAAGTTCATATTGATGACGGTTGTACACTAATTATTGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_11 zf-RING_2

Protein Analysis

274

Amino Acids

31.0

Weight (kDa)

5.22

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 82 - 163 4.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AccII CGCG 1 cut(s) 453
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 542
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 163
AfaI GTAC 5 cut(s) 184, 506, 772, 780, 805
AfiI CCNNNNNNNGG 1 cut(s) 395
AflII CTTAAG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 3 cut(s) 175, 296, 394
AluBI AGCT 8 cut(s) 232, 345, 442, 464, 487, 524, 620, 661
AluI AGCT 8 cut(s) 232, 345, 442, 464, 487, 524, 620, 661
Alw21I GWGCWC 3 cut(s) 347, 489, 622
AlwI GGATC 1 cut(s) 438
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 2 cut(s) 542, 756
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 50
BaeI ACNNNNGTAYC 4 cut(s) 166, 199, 762, 795
BanII GRGCYC 3 cut(s) 347, 489, 622
Bbv12I GWGCWC 3 cut(s) 347, 489, 622
BbvCI CCTCAGC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 413, 452
BceAI ACGGC 2 cut(s) 289, 373
BclI TGATCA 1 cut(s) 594
BfmI CTRYAG 2 cut(s) 717, 774
BfrI CTTAAG 1 cut(s) 443
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 50
BmsI GCATC 3 cut(s) 66, 285, 457
BpmI CTGGAG 1 cut(s) 713
Bpu10I CCTNAGC 2 cut(s) 6, 62
BsaJI CCNNGG 2 cut(s) 355, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 355, 753
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 20, 76
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 1 cut(s) 59
BseX3I CGGCCG 1 cut(s) 542
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 453
Bsh1285I CGRYCG 1 cut(s) 545
BshFI GGCC 2 cut(s) 544, 758
BsiEI CGRYCG 1 cut(s) 545
BsiHKAI GWGCWC 3 cut(s) 347, 489, 622
BsiHKCI CYCGRG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 395
BsnI GGCC 2 cut(s) 544, 758
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 347, 489, 622
Bsp1407I TGTACA 1 cut(s) 803
Bsp143I GATC 4 cut(s) 430, 594, 623, 643
Bsp68I TCGCGA 1 cut(s) 453
BspANI GGCC 2 cut(s) 544, 758
BspCNI CTCAG 2 cut(s) 19, 75
BspFNI CGCG 1 cut(s) 453
BspHI TCATGA 2 cut(s) 43, 105
BspMAI CTGCAG 1 cut(s) 778
BspPI GGATC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 756
BspTI CTTAAG 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 803
BsrI ACTGG 1 cut(s) 696
BssECI CCNNGG 2 cut(s) 355, 753
BssMI GATC 4 cut(s) 430, 594, 623, 643
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 91, 800
Bst6I CTCTTC 3 cut(s) 122, 356, 756
BstAFI CTTAAG 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 803
BstC8I GCNNGC 3 cut(s) 165, 303, 440
BstDEI CTNAG 2 cut(s) 6, 62
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 453
BstKTI GATC 4 cut(s) 433, 597, 626, 646
BstMBI GATC 4 cut(s) 430, 594, 623, 643
BstMCI CGRYCG 1 cut(s) 545
BstMWI GCNNNNNNNGC 4 cut(s) 11, 63, 164, 626
BstNSI RCATGY 1 cut(s) 576
BstSFI CTRYAG 2 cut(s) 717, 774
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BstZI CGGCCG 1 cut(s) 542
BsuRI GGCC 2 cut(s) 544, 758
BtgZI GCGATG 2 cut(s) 229, 434
BtsCI GGATG 1 cut(s) 57
BtsI GCAGTG 2 cut(s) 383, 513
BtsIMutI CAGTG 5 cut(s) 87, 214, 383, 513, 604
BtuMI TCGCGA 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 165, 303, 440
CciI TCATGA 2 cut(s) 43, 105
CseI GACGC 2 cut(s) 20, 507
Csp6I GTAC 5 cut(s) 183, 505, 771, 779, 804
CviAII CATG 7 cut(s) 44, 73, 106, 155, 331, 573, 631
CviQI GTAC 5 cut(s) 183, 505, 771, 779, 804
DdeI CTNAG 2 cut(s) 6, 62
DpnI GATC 4 cut(s) 432, 596, 625, 645
DpnII GATC 4 cut(s) 430, 594, 623, 643
EaeI YGGCCR 1 cut(s) 542
EagI CGGCCG 1 cut(s) 542
Eam1104I CTCTTC 3 cut(s) 122, 356, 756
EarI CTCTTC 3 cut(s) 122, 356, 756
Ecl136II GAGCTC 3 cut(s) 345, 487, 620
EclXI CGGCCG 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 3 cut(s) 347, 489, 622
Eco52I CGGCCG 1 cut(s) 542
Eco53kI GAGCTC 3 cut(s) 345, 487, 620
Eco57I CTGAAG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 3 cut(s) 345, 487, 620
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 3 cut(s) 347, 489, 622
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 7 cut(s) 47, 76, 109, 158, 334, 576, 634
FatI CATG 7 cut(s) 43, 72, 105, 154, 330, 572, 630
FbaI TGATCA 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 3 cut(s) 347, 489, 622
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 2 cut(s) 544, 758
HgaI GACGC 2 cut(s) 20, 507
Hin1II CATG 7 cut(s) 47, 76, 109, 158, 334, 576, 634
HindIII AAGCTT 2 cut(s) 230, 440
HinfI GANTC 2 cut(s) 538, 733
Hpy166II GTNNAC 2 cut(s) 689, 806
Hpy188I TCNGA 2 cut(s) 145, 254
Hpy188III TCNNGA 4 cut(s) 8, 44, 106, 452
Hpy8I GTNNAC 2 cut(s) 689, 806
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 91, 800
HpyCH4V TGCA 2 cut(s) 438, 776
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 63, 164, 626
HpyF3I CTNAG 2 cut(s) 6, 62
Hsp92II CATG 7 cut(s) 47, 76, 109, 158, 334, 576, 634
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 4 cut(s) 430, 594, 623, 643
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 2 cut(s) 461, 617
LpnPI CCDG 4 cut(s) 211, 287, 677, 752
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 3 cut(s) 66, 285, 457
MaeIII GTNAC 3 cut(s) 20, 575, 602
MalI GATC 4 cut(s) 432, 596, 625, 645
MboI GATC 4 cut(s) 430, 594, 623, 643
MboII GAAGA 6 cut(s) 109, 212, 373, 566, 653, 773
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 3 cut(s) 347, 489, 622
MluCI AATT 4 cut(s) 139, 202, 337, 810
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 9 cut(s) 46, 71, 77, 80, 125, 315, 357, 421, 748
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 2 cut(s) 234, 444
MslI CAYNNNNRTG 2 cut(s) 651, 792
MspCI CTTAAG 1 cut(s) 443
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 4 cut(s) 11, 63, 164, 626
NdeII GATC 4 cut(s) 430, 594, 623, 643
NlaIII CATG 7 cut(s) 47, 76, 109, 158, 334, 576, 634
NmeAIII GCCGAG 3 cut(s) 193, 570, 778
NruI TCGCGA 1 cut(s) 453
NspI RCATGY 1 cut(s) 576
PaeR7I CTCGAG 1 cut(s) 50
PagI TCATGA 2 cut(s) 43, 105
PciI ACATGT 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 756
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 538, 733
PkrI GCNGC 1 cut(s) 100
PscI ACATGT 1 cut(s) 572
PsiI TTATAA 1 cut(s) 312
Psp124BI GAGCTC 3 cut(s) 347, 489, 622
PspXI VCTCGAGB 1 cut(s) 50
PstI CTGCAG 1 cut(s) 778
PsuI RGATCY 1 cut(s) 430
RruI TCGCGA 1 cut(s) 453
RsaI GTAC 5 cut(s) 184, 506, 772, 780, 805
RsaNI GTAC 5 cut(s) 183, 505, 771, 779, 804
RseI CAYNNNNRTG 2 cut(s) 651, 792
SacI GAGCTC 3 cut(s) 347, 489, 622
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 2 cut(s) 234, 444
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 4 cut(s) 430, 594, 623, 643
SduI GDGCHC 3 cut(s) 347, 489, 622
SfaNI GCATC 3 cut(s) 66, 285, 457
SfcI CTRYAG 2 cut(s) 717, 774
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 2 cut(s) 651, 792
SmlI CTYRAG 2 cut(s) 50, 443
SmoI CTYRAG 2 cut(s) 50, 443
Sse9I AATT 4 cut(s) 139, 202, 337, 810
SstI GAGCTC 3 cut(s) 347, 489, 622
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 91, 800
TaqI TCGA 2 cut(s) 51, 622
TasI AATT 4 cut(s) 139, 202, 337, 810
TatI WGTACW 2 cut(s) 778, 803
TfiI GAWTC 2 cut(s) 538, 733
Tru1I TTAA 2 cut(s) 234, 444
Tru9I TTAA 2 cut(s) 234, 444
TscAI CASTG 5 cut(s) 94, 214, 390, 520, 604
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 4 cut(s) 32, 60, 654, 776
TspRI CASTG 5 cut(s) 94, 214, 390, 520, 604
Vha464I CTTAAG 1 cut(s) 443
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 576
XhoI CTCGAG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.