Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005970

Physical Location & Seq

Genomic Coordinates Reverse (-)

29136675 .. 29142390

Gene Structure 5716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1212400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGGCTCGGAAGCGATGAAGAGGTTGGGGTTGAAGAAAGCGATGGTGTTGGCGGTGGCGGTGGTTGTGGAGGCAACTCGTACGGAGGTTCTGTTTCCTGCTCGATTTGCCTTGAAGTCGTCGCCGATAATGGGGATAGATCTCGGGCCAAGCTGCAATGCGGGCATGAATTTCATCTAGATTGCATTGGTTCAGCCTTCAATGTAAAGGGGGCAATGCAATGCCCTAATTGTAGGAAAATCGAGAAAGGTCAATGGCTTTATTCTAATGGATGCCGTTCACTTCCGGAATTGAACATGGAAGACTGGACACATGATGAGGATCTCTATGATTTAAGTTATTCTGAAATGTCCTTTGGTGTGCACTGGTGTCCATTTGGTAGCTTAGCACGACTTCCTTCGTCATTTGAGGAAGGGGAGTTTTCACCAACCTCGTATCACGAAATACTTGGACAGCATGCTATCTTCGCTGAGCATACAGCTGTATCATCTGCTGCCCATCCTTGCCCGTATATCGCTTACTTTGGACCAATTCACCCTTCATCCTCAAACTCCAGTGGAACTGTGTCAGATGCTTCCAACTTCAACCATCATTGGAGTGGCACATCTGTACCGAGTGAAATGCCCAACTCCTATGCTTTTCCTGCCATGGATCTCCATTATCACAGTTGGGAGCACCATTCCCCGCCTTCATTCTCTACAACCAACAATCATATTGGTGGCGCTGACCAGGCTTCAATTCCATCTGTTACTCAAAGATCTGCTAGGCCAAGCGCAGAAATAGCAAGATCGGGATCTTTTATGCATCCATTCCTTGTCGGTCACAGCTCTAGTGCTAGAGCTGGCAGCTCAGTGACATCGTCAATGATTCCTCCTTATCCTGGCAGCAATGCACGGACCCGCGACAGAGTCCAAGCTCTTCAGGCATACTATCAACAGCAACAGCCTAGTAATTCACCAACCATGCGTACGCCCATAGTTCACGGAGCCCGAAGATCCAGCAGTCAAAGAGGGGTGGCTCAAGTAGGGCCAGTGGCTTCATCATCAGACCAAAATGGTGGTTTTTATATTTTCCCGTTCGGTTCATCAGGTCGTAACTACCAAGAAGCTGAAAGTCCGTTACCTAGTCGTTTTCATCCATGGGAAAGAGATCACTTGCCTTCATTCTCGATGAATCAGGTTGACCGAGATCAAGGTTGGCCTGCTTTTAACCAAGGTGGCGGTGGGTCAGACTCAGCGATCAGAGGGAGCAGCTTCCGGCAAAGACATGGGTCTGAGAGGTCATCTTCACAAAACCGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

435

Amino Acids

46.9

Weight (kDa)

5.96

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	33 - 79	1.9e-07	Ring finger domain
zf-RING_11	PF17123	34 - 63	1e-06	RING-like zinc finger
zf-C3HC4	PF00097	34 - 78	1.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05545
fragaria_vesca	FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620
malus_domestica	MD04G1199600.v1.1 MD08G1111000.v1.1 MD12G1212400.v1.1
prunus_persica	Prupe.6G320100_v2.0.a1 Prupe.6G320100_v2.0.a1
pyrus_communis	pycom04g17630 pycom12g19860
rosa_chinensis	RchiOBHm_Chr3g0455821
rosa_laevigata	RLG00000025329
rosa_multiflora	Rmu_ssc0000046.1_g000008 Rmu_ssc0000046.1_g000018
rosa_roxburghii	Rroxscaffold_6G00423430 Rroxscaffold_6G00423930
rosa_rugosa	Rorug03G0010900 Rorug03G0011000
rosa_samantha	Rh3AG069800 Rh3BG072400 Rh3CG070600 Rh3DG073100
rosa_wichuraiana	Rw3G005670 Rw3G006020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	903
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	6 cut(s)	54, 60, 162, 686, 901, 1221
AclWI	GGATC	4 cut(s)	330, 660, 802, 990
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	905
AfaI	GTAC	3 cut(s)	83, 612, 970
AfiI	CCNNNNNNNGG	2 cut(s)	132, 881
AgeI	ACCGGT	1 cut(s)	1296
AgsI	TTSAA	6 cut(s)	35, 116, 202, 295, 586, 738
AjnI	CCWGG	2 cut(s)	729, 880
AjuI	GAANNNNNNNTTGG	4 cut(s)	339, 371, 523, 555
AluBI	AGCT	9 cut(s)	154, 384, 482, 828, 842, 849, 917, 1109, 1254
AluI	AGCT	9 cut(s)	154, 384, 482, 828, 842, 849, 917, 1109, 1254
Alw21I	GWGCWC	2 cut(s)	366, 678
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	4 cut(s)	330, 660, 802, 990
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	4 cut(s)	147, 767, 1028, 1199
ApaLI	GTGCAC	1 cut(s)	362
ApeKI	GCWGC	5 cut(s)	154, 494, 846, 885, 1251
ApoI	RAATTY	1 cut(s)	170
AsiGI	ACCGGT	1 cut(s)	1296
AspLEI	GCGC	2 cut(s)	725, 776
AspS9I	GGNCC	4 cut(s)	147, 527, 897, 1028
AsuHPI	GGTGA	3 cut(s)	417, 527, 948
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	527, 897
BaeGI	GKGCMC	1 cut(s)	366
BaeI	ACNNNNGTAYC	4 cut(s)	468, 501, 594, 627
BanII	GRGCYC	2 cut(s)	9, 991
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	366, 678
BbvI	GCAGC	5 cut(s)	141, 481, 858, 897, 1263
BccI	CCATC	4 cut(s)	38, 507, 597, 751
BceAI	ACGGC	1 cut(s)	261
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	2 cut(s)	731, 882
BfaI	CTAG	6 cut(s)	179, 765, 831, 837, 948, 1125
BfoI	RGCGCY	1 cut(s)	726
BglII	AGATCT	2 cut(s)	140, 758
BisI	GCNGC	5 cut(s)	155, 495, 847, 886, 1252
BlpI	GCTNAGC	2 cut(s)	385, 471
BlsI	GCNGC	5 cut(s)	156, 496, 848, 887, 1253
Bme1390I	CCNGG	2 cut(s)	731, 882
Bme18I	GGWCC	2 cut(s)	527, 897
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	4 cut(s)	147, 527, 897, 1028
BmiI	GGNNCC	2 cut(s)	899, 988
BmrFI	CCNGG	2 cut(s)	731, 882
BmsI	GCATC	3 cut(s)	263, 562, 814
BoxI	GACNNNNGTC	1 cut(s)	1270
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	538
Bpu1102I	GCTNAGC	2 cut(s)	385, 471
BpuEI	CTTGAG	1 cut(s)	1005
BsaBI	GATNNNNATC	2 cut(s)	321, 793
BsaJI	CCNNGG	3 cut(s)	648, 1139, 1213
BsaWI	WCCGGW	2 cut(s)	286, 1296
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 881
Bse118I	RCCGGY	1 cut(s)	1296
Bse1I	ACTGG	4 cut(s)	311, 371, 555, 1031
Bse3DI	GCAATG	4 cut(s)	164, 222, 227, 895
Bse8I	GATNNNNATC	2 cut(s)	321, 793
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	731, 882
BseDI	CCNNGG	3 cut(s)	648, 1139, 1213
BseGI	GGATG	5 cut(s)	278, 499, 542, 805, 1135
BseJI	GATNNNNATC	2 cut(s)	321, 793
BseLI	CCNNNNNNNGG	2 cut(s)	132, 881
BseMI	GCAATG	4 cut(s)	164, 222, 227, 895
BseMII	CTCAG	4 cut(s)	462, 864, 1248, 1266
BseNI	ACTGG	4 cut(s)	311, 371, 555, 1031
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	5 cut(s)	141, 481, 858, 897, 1263
Bsh1236I	CGCG	1 cut(s)	903
BshFI	GGCC	4 cut(s)	149, 769, 1030, 1201
BshTI	ACCGGT	1 cut(s)	1296
BsiHKAI	GWGCWC	2 cut(s)	366, 678
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	287, 1258, 1297
BsiWI	CGTACG	2 cut(s)	81, 968
BslI	CCNNNNNNNGG	2 cut(s)	132, 881
BsnI	GGCC	4 cut(s)	149, 769, 1030, 1201
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	4 cut(s)	9, 366, 678, 991
Bsp13I	TCCGGA	1 cut(s)	286
Bsp1720I	GCTNAGC	2 cut(s)	385, 471
Bsp19I	CCATGG	2 cut(s)	648, 1139
BspACI	CCGC	6 cut(s)	54, 60, 162, 686, 901, 1221
BspANI	GGCC	4 cut(s)	149, 769, 1030, 1201
BspCNI	CTCAG	4 cut(s)	463, 863, 1247, 1267
BspEI	TCCGGA	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	903
BspLI	GGNNCC	2 cut(s)	899, 988
BspPI	GGATC	4 cut(s)	330, 660, 802, 990
BspQI	GCTCTTC	1 cut(s)	924
BsrDI	GCAATG	4 cut(s)	164, 222, 227, 895
BsrFI	RCCGGY	1 cut(s)	1296
BsrI	ACTGG	4 cut(s)	311, 371, 555, 1031
BssAI	RCCGGY	1 cut(s)	1296
BssECI	CCNNGG	3 cut(s)	648, 1139, 1213
BssT1I	CCWWGG	3 cut(s)	648, 1139, 1213
Bst2UI	CCWGG	2 cut(s)	731, 882
Bst4CI	ACNGT	2 cut(s)	565, 668
Bst6I	CTCTTC	2 cut(s)	15, 924
BstC8I	GCNNGC	4 cut(s)	164, 459, 844, 1203
BstDEI	CTNAG	5 cut(s)	385, 471, 850, 1234, 1275
BstDSI	CCRYGG	2 cut(s)	648, 1139
BstF5I	GGATG	5 cut(s)	278, 499, 542, 805, 1135
BstFNI	CGCG	1 cut(s)	903
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	2 cut(s)	725, 776
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 163, 467, 644, 731, 782, 923
BstNI	CCWGG	2 cut(s)	731, 882
BstNSI	RCATGY	1 cut(s)	461
BstPAI	GACNNNNGTC	1 cut(s)	1270
BstSCI	CCNGG	2 cut(s)	729, 880
BstSLI	GKGCMC	1 cut(s)	366
BstUI	CGCG	1 cut(s)	903
BstV1I	GCAGC	5 cut(s)	141, 481, 858, 897, 1263
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	6 cut(s)	140, 322, 652, 758, 794, 995
BstXI	CCANNNNNNTGG	1 cut(s)	1058
BstYI	RGATCY	6 cut(s)	140, 322, 652, 758, 794, 995
BsuRI	GGCC	4 cut(s)	149, 769, 1030, 1201
BtgI	CCRYGG	2 cut(s)	648, 1139
BtgZI	GCGATG	2 cut(s)	30, 57
BtsCI	GGATG	5 cut(s)	278, 499, 542, 805, 1135
BtsIMutI	CAGTG	4 cut(s)	364, 562, 858, 1038
Cac8I	GCNNGC	4 cut(s)	164, 459, 844, 1203
CfoI	GCGC	2 cut(s)	725, 776
Cfr10I	RCCGGY	1 cut(s)	1296
Cfr13I	GGNCC	4 cut(s)	147, 527, 897, 1028
Csp6I	GTAC	3 cut(s)	82, 611, 969
CspAI	ACCGGT	1 cut(s)	1296
CviAII	CATG	8 cut(s)	167, 298, 314, 458, 649, 964, 1140, 1268
CviQI	GTAC	3 cut(s)	82, 611, 969
DdeI	CTNAG	5 cut(s)	385, 471, 850, 1234, 1275
Eam1104I	CTCTTC	2 cut(s)	15, 924
EarI	CTCTTC	2 cut(s)	15, 924
Eco130I	CCWWGG	3 cut(s)	648, 1139, 1213
Eco24I	GRGCYC	2 cut(s)	9, 991
Eco47I	GGWCC	2 cut(s)	527, 897
Eco57I	CTGAAG	1 cut(s)	905
Eco88I	CYCGRG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	729, 880
EcoT14I	CCWWGG	3 cut(s)	648, 1139, 1213
EcoT22I	ATGCAT	1 cut(s)	807
EcoT38I	GRGCYC	2 cut(s)	9, 991
ErhI	CCWWGG	3 cut(s)	648, 1139, 1213
FaeI	CATG	8 cut(s)	170, 301, 317, 461, 652, 967, 1143, 1271
FatI	CATG	8 cut(s)	166, 297, 313, 457, 648, 963, 1139, 1267
FauI	CCCGC	3 cut(s)	155, 693, 908
Fnu4HI	GCNGC	5 cut(s)	155, 495, 847, 886, 1252
FokI	GGATG	5 cut(s)	285, 486, 529, 792, 1122
FriOI	GRGCYC	2 cut(s)	9, 991
Fsp4HI	GCNGC	5 cut(s)	155, 495, 847, 886, 1252
FspBI	CTAG	6 cut(s)	179, 765, 831, 837, 948, 1125
GlaI	GCGC	2 cut(s)	724, 775
GluI	GCNGC	5 cut(s)	155, 495, 847, 886, 1252
GsuI	CTGGAG	1 cut(s)	538
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	4 cut(s)	149, 769, 1030, 1201
HapII	CCGG	3 cut(s)	287, 1258, 1297
HhaI	GCGC	2 cut(s)	725, 776
Hin1II	CATG	8 cut(s)	170, 301, 317, 461, 652, 967, 1143, 1271
Hin6I	GCGC	2 cut(s)	723, 774
HinP1I	GCGC	2 cut(s)	723, 774
HincII	GTYRAC	1 cut(s)	1183
HindII	GTYRAC	1 cut(s)	1183
HinfI	GANTC	4 cut(s)	868, 909, 1174, 1232
HpaII	CCGG	3 cut(s)	287, 1258, 1297
HphI	GGTGA	3 cut(s)	417, 527, 948
Hpy166II	GTNNAC	4 cut(s)	281, 364, 982, 1183
Hpy188I	TCNGA	7 cut(s)	11, 346, 571, 1048, 1231, 1244, 1276
Hpy188III	TCNNGA	6 cut(s)	179, 244, 287, 440, 792, 1168
Hpy8I	GTNNAC	4 cut(s)	281, 364, 982, 1183
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	6 cut(s)	208, 407, 408, 549, 699, 1170
HpyCH4III	ACNGT	2 cut(s)	565, 668
HpyCH4V	TGCA	6 cut(s)	157, 186, 220, 364, 805, 893
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 163, 467, 644, 731, 782, 923
HpyF3I	CTNAG	5 cut(s)	385, 471, 850, 1234, 1275
Hsp92II	CATG	8 cut(s)	170, 301, 317, 461, 652, 967, 1143, 1271
HspAI	GCGC	2 cut(s)	723, 774
Kpn2I	TCCGGA	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	3 cut(s)	673, 986, 1248
Lsp1109I	GCAGC	5 cut(s)	141, 481, 858, 897, 1263
LweI	GCATC	3 cut(s)	263, 562, 814
MaeI	CTAG	6 cut(s)	179, 765, 831, 837, 948, 1125
MaeIII	GTNAC	5 cut(s)	748, 821, 853, 1094, 1119
MboII	GAAGA	7 cut(s)	32, 47, 314, 457, 911, 1005, 1278
MflI	RGATCY	6 cut(s)	140, 322, 652, 758, 794, 995
MhlI	GDGCHC	4 cut(s)	9, 366, 678, 991
MluCI	AATT	6 cut(s)	170, 229, 290, 531, 738, 952
MlyI	GAGTC	2 cut(s)	918, 1226
MmeI	TCCRAC	1 cut(s)	603
Mph1103I	ATGCAT	1 cut(s)	807
MroI	TCCGGA	1 cut(s)	286
MseI	TTAA	2 cut(s)	335, 1209
MslI	CAYNNNNRTG	2 cut(s)	597, 717
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	3 cut(s)	287, 1258, 1297
MspR9I	CCNGG	2 cut(s)	731, 882
MvaI	CCWGG	2 cut(s)	731, 882
MvnI	CGCG	1 cut(s)	903
MwoI	GCNNNNNNNGC	7 cut(s)	108, 163, 467, 644, 731, 782, 923
NcoI	CCATGG	2 cut(s)	648, 1139
NlaIII	CATG	8 cut(s)	170, 301, 317, 461, 652, 967, 1143, 1271
NlaIV	GGNNCC	2 cut(s)	899, 988
NmuCI	GTSAC	2 cut(s)	821, 853
NsiI	ATGCAT	1 cut(s)	807
NspI	RCATGY	1 cut(s)	461
PaeI	GCATGC	1 cut(s)	461
PciSI	GCTCTTC	1 cut(s)	924
PfeI	GAWTC	2 cut(s)	868, 1174
Pfl23II	CGTACG	2 cut(s)	81, 968
PflFI	GACNNNGTC	2 cut(s)	859, 908
PinAI	ACCGGT	1 cut(s)	1296
PkrI	GCNGC	5 cut(s)	156, 496, 848, 887, 1253
PleI	GAGTC	2 cut(s)	917, 1226
PpsI	GAGTC	2 cut(s)	917, 1226
PshAI	GACNNNNGTC	1 cut(s)	1270
Psp6I	CCWGG	2 cut(s)	729, 880
PspGI	CCWGG	2 cut(s)	729, 880
PspLI	CGTACG	2 cut(s)	81, 968
PspN4I	GGNNCC	2 cut(s)	899, 988
PspPI	GGNCC	4 cut(s)	147, 527, 897, 1028
PsuI	RGATCY	6 cut(s)	140, 322, 652, 758, 794, 995
PsyI	GACNNNGTC	2 cut(s)	859, 908
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	83, 612, 970
RsaNI	GTAC	3 cut(s)	82, 611, 969
RseI	CAYNNNNRTG	2 cut(s)	597, 717
SapI	GCTCTTC	1 cut(s)	924
SaqAI	TTAA	2 cut(s)	335, 1209
SatI	GCNGC	5 cut(s)	155, 495, 847, 886, 1252
Sau96I	GGNCC	4 cut(s)	147, 527, 897, 1028
SchI	GAGTC	2 cut(s)	918, 1226
ScrFI	CCNGG	2 cut(s)	731, 882
SduI	GDGCHC	4 cut(s)	9, 366, 678, 991
SfaNI	GCATC	3 cut(s)	263, 562, 814
SinI	GGWCC	2 cut(s)	527, 897
SmiMI	CAYNNNNRTG	2 cut(s)	597, 717
SmlI	CTYRAG	1 cut(s)	1020
SmoI	CTYRAG	1 cut(s)	1020
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	6 cut(s)	170, 229, 290, 531, 738, 952
SsiI	CCGC	6 cut(s)	54, 60, 162, 686, 901, 1221
SspMI	CTAG	6 cut(s)	179, 765, 831, 837, 948, 1125
StyD4I	CCNGG	2 cut(s)	729, 880
StyI	CCWWGG	3 cut(s)	648, 1139, 1213
TaaI	ACNGT	2 cut(s)	565, 668
TaqI	TCGA	3 cut(s)	104, 243, 1169
TaqII	GACCGA	2 cut(s)	809, 1200
TasI	AATT	6 cut(s)	170, 229, 290, 531, 738, 952
TfiI	GAWTC	2 cut(s)	868, 1174
Tru1I	TTAA	2 cut(s)	335, 1209
Tru9I	TTAA	2 cut(s)	335, 1209
TscAI	CASTG	4 cut(s)	371, 562, 858, 1038
TseFI	GTSAC	2 cut(s)	821, 853
TseI	GCWGC	5 cut(s)	154, 494, 846, 885, 1251
Tsp45I	GTSAC	2 cut(s)	821, 853
TspGWI	ACGGA	4 cut(s)	99, 910, 999, 1107
TspRI	CASTG	4 cut(s)	371, 562, 858, 1038
Tth111I	GACNNNGTC	2 cut(s)	859, 908
VneI	GTGCAC	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	527, 897
XapI	RAATTY	1 cut(s)	170
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	2 cut(s)	596, 1220
XspI	CTAG	6 cut(s)	179, 765, 831, 837, 948, 1125
Zsp2I	ATGCAT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.