Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005970

Physical Location & Seq

Genomic Coordinates Reverse (-)

21556485 .. 21560052

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAAGACTGGACACATGATGAGGATCTCTCTGATTTAAGTTATTCTGAAATGTCCTTTGGTGTGCACTGGTGTCCATTTGGTAGCTTAGCACGACTTCCTTCATCATTTGAGGAAGGGGAGTTTTCACCAACCTCGTATCACGAAATACTTGGACAGCATGCTATCTTTGCTGAGCATACAGCTGTATCGTCTGCTGCCCATCCTTGCCCATATATCGCTTACTTTGGGCCAATTCACCCTTCATCCTCAAACTCCAGTGGAACTGTGTCAGAAGCTTCCAACTTCAACCATCATTGGAGTGGCACATCTGTACCAAGTGAAATGCCCAACTCCTATGCTTTTCCTGCCATGGATCTCCATTATCACAGTTGGGAGCACCATTCCCCGCCTTCATTCTCTACAACCAACAATCATATTGGTGGTGTTGACCAGGCTTCAATTCCATCTGTTACTCAAAGATCTGCTAGGCCGAGCGCAGAAATAGCAAGATCGGGATCTTTTATGCATCCATTCCTTGTCGGTCACAGCTCTAGTGCTAGAGCTGGCAGCTCAATGACATCGTCAATGATTCCTCCTTATCCTGGCAGCAATGCACGGACCCGCGACAGAGTCCAAGCTCTTCAGGCATACTATCAACAGCAACAGCCTAGTAATTCACCAACCATGCGTTCGCCCATAGTTCCAGGAGCCCGAAGATCCAGCAGTCAAAGAGGGGTGGCTCAAGTAGGGCCAGTGGCTTCATCATCAGACCAAAATGGTGGTTTTTATATTTTCCCGTTCGGTTCATCAGGTCGTAACTACCAAGAAGCTGAAAATCCGTTACCTAGTCGTTTTCATCCATGGGAAAGAGATCATTTGCCTTCATTCCCGATGAATCAGGTTGACCGAGATCAAGGTTGGCCTGCCTTTAACCAAGGTGGCAGTGGGTCAGACTCGGTGATCAGAGGGAGCAGCTTCCGGCAAAGACATGGGTCTGAGAGGTCATCTTCACAAAACCGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

336

Amino Acids

36.69

Weight (kDa)

6.23

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05545
fragaria_vesca	FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620
malus_domestica	MD04G1199600.v1.1 MD08G1111000.v1.1 MD12G1212400.v1.1
prunus_persica	Prupe.6G320100_v2.0.a1 Prupe.6G320100_v2.0.a1
pyrus_communis	pycom04g17630 pycom12g19860
rosa_chinensis	RchiOBHm_Chr3g0455821
rosa_laevigata	RLG00000025329
rosa_multiflora	Rmu_ssc0000046.1_g000008 Rmu_ssc0000046.1_g000018
rosa_roxburghii	Rroxscaffold_6G00423430 Rroxscaffold_6G00423930
rosa_rugosa	Rorug03G0010900 Rorug03G0011000
rosa_samantha	Rh3AG069800 Rh3BG072400 Rh3CG070600 Rh3DG073100
rosa_wichuraiana	Rw3G005670 Rw3G006020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	606
AciI	CCGC	2 cut(s)	389, 604
AclWI	GGATC	4 cut(s)	33, 363, 505, 693
AcuI	CTGAAG	1 cut(s)	608
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgeI	ACCGGT	1 cut(s)	999
AgsI	TTSAA	2 cut(s)	289, 441
AjnI	CCWGG	3 cut(s)	432, 583, 685
AjuI	GAANNNNNNNTTGG	6 cut(s)	42, 74, 226, 258, 655, 687
AluBI	AGCT	9 cut(s)	87, 185, 278, 531, 545, 552, 620, 812, 957
AluI	AGCT	9 cut(s)	87, 185, 278, 531, 545, 552, 620, 812, 957
Alw21I	GWGCWC	2 cut(s)	69, 381
Alw44I	GTGCAC	1 cut(s)	65
AlwI	GGATC	4 cut(s)	33, 363, 505, 693
AoxI	GGCC	4 cut(s)	230, 470, 731, 902
ApaLI	GTGCAC	1 cut(s)	65
ApeKI	GCWGC	4 cut(s)	197, 549, 588, 954
AsiGI	ACCGGT	1 cut(s)	999
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	3 cut(s)	230, 600, 731
AsuHPI	GGTGA	4 cut(s)	120, 230, 651, 952
AvaII	GGWCC	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	69
BaeI	ACNNNNGTAYC	4 cut(s)	171, 204, 297, 330
BanII	GRGCYC	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	69, 381
BbvI	GCAGC	4 cut(s)	184, 561, 600, 966
BccI	CCATC	3 cut(s)	210, 300, 454
BciT130I	CCWGG	3 cut(s)	434, 585, 687
BclI	TGATCA	1 cut(s)	942
BfaI	CTAG	5 cut(s)	468, 534, 540, 651, 828
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	4 cut(s)	198, 550, 589, 955
BlpI	GCTNAGC	2 cut(s)	88, 174
BlsI	GCNGC	4 cut(s)	199, 551, 590, 956
Bme1390I	CCNGG	3 cut(s)	434, 585, 687
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	3 cut(s)	230, 600, 731
BmiI	GGNNCC	2 cut(s)	602, 691
BmrFI	CCNGG	3 cut(s)	434, 585, 687
BmsI	GCATC	1 cut(s)	517
BoxI	GACNNNNGTC	1 cut(s)	973
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	1 cut(s)	241
Bpu1102I	GCTNAGC	2 cut(s)	88, 174
BpuEI	CTTGAG	1 cut(s)	708
BsaBI	GATNNNNATC	2 cut(s)	24, 496
BsaJI	CCNNGG	3 cut(s)	351, 842, 916
BsaWI	WCCGGW	1 cut(s)	999
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse118I	RCCGGY	1 cut(s)	999
Bse1I	ACTGG	4 cut(s)	14, 74, 258, 734
Bse3DI	GCAATG	1 cut(s)	598
Bse8I	GATNNNNATC	2 cut(s)	24, 496
BseBI	CCWGG	3 cut(s)	434, 585, 687
BseDI	CCNNGG	3 cut(s)	351, 842, 916
BseGI	GGATG	4 cut(s)	202, 245, 508, 838
BseJI	GATNNNNATC	2 cut(s)	24, 496
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	2 cut(s)	165, 969
BseNI	ACTGG	4 cut(s)	14, 74, 258, 734
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	4 cut(s)	184, 561, 600, 966
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	4 cut(s)	232, 472, 733, 904
BshTI	ACCGGT	1 cut(s)	999
BsiHKAI	GWGCWC	2 cut(s)	69, 381
BsiSI	CCGG	2 cut(s)	961, 1000
BslI	CCNNNNNNNGG	1 cut(s)	584
BsnI	GGCC	4 cut(s)	232, 472, 733, 904
Bsp1286I	GDGCHC	3 cut(s)	69, 381, 694
Bsp143I	GATC	9 cut(s)	25, 355, 461, 491, 497, 698, 853, 892, 942
Bsp1720I	GCTNAGC	2 cut(s)	88, 174
Bsp19I	CCATGG	2 cut(s)	351, 842
BspACI	CCGC	2 cut(s)	389, 604
BspANI	GGCC	4 cut(s)	232, 472, 733, 904
BspCNI	CTCAG	2 cut(s)	166, 970
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	602, 691
BspPI	GGATC	4 cut(s)	33, 363, 505, 693
BspQI	GCTCTTC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	999
BsrI	ACTGG	4 cut(s)	14, 74, 258, 734
BssAI	RCCGGY	1 cut(s)	999
BssECI	CCNNGG	3 cut(s)	351, 842, 916
BssMI	GATC	9 cut(s)	25, 355, 461, 491, 497, 698, 853, 892, 942
BssT1I	CCWWGG	3 cut(s)	351, 842, 916
Bst2UI	CCWGG	3 cut(s)	434, 585, 687
Bst4CI	ACNGT	2 cut(s)	268, 371
Bst6I	CTCTTC	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	162, 547, 906
BstDEI	CTNAG	3 cut(s)	88, 174, 978
BstDSI	CCRYGG	2 cut(s)	351, 842
BstF5I	GGATG	4 cut(s)	202, 245, 508, 838
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	9 cut(s)	28, 358, 464, 494, 500, 701, 856, 895, 945
BstMBI	GATC	9 cut(s)	25, 355, 461, 491, 497, 698, 853, 892, 942
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 347, 485, 626
BstNI	CCWGG	3 cut(s)	434, 585, 687
BstNSI	RCATGY	1 cut(s)	164
BstPAI	GACNNNNGTC	1 cut(s)	973
BstSCI	CCNGG	3 cut(s)	432, 583, 685
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	184, 561, 600, 966
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	5 cut(s)	25, 355, 461, 497, 698
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	5 cut(s)	25, 355, 461, 497, 698
BsuRI	GGCC	4 cut(s)	232, 472, 733, 904
BtgI	CCRYGG	2 cut(s)	351, 842
BtsCI	GGATG	4 cut(s)	202, 245, 508, 838
BtsI	GCAGTG	1 cut(s)	931
BtsIMutI	CAGTG	4 cut(s)	67, 265, 741, 931
Cac8I	GCNNGC	3 cut(s)	162, 547, 906
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	999
Cfr13I	GGNCC	3 cut(s)	230, 600, 731
Csp6I	GTAC	1 cut(s)	314
CspAI	ACCGGT	1 cut(s)	999
CviAII	CATG	6 cut(s)	17, 161, 352, 667, 843, 971
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	3 cut(s)	88, 174, 978
DpnI	GATC	9 cut(s)	27, 357, 463, 493, 499, 700, 855, 894, 944
DpnII	GATC	9 cut(s)	25, 355, 461, 491, 497, 698, 853, 892, 942
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	3 cut(s)	351, 842, 916
Eco24I	GRGCYC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	608
EcoRII	CCWGG	3 cut(s)	432, 583, 685
EcoT14I	CCWWGG	3 cut(s)	351, 842, 916
EcoT22I	ATGCAT	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	694
ErhI	CCWWGG	3 cut(s)	351, 842, 916
FaeI	CATG	6 cut(s)	20, 164, 355, 670, 846, 974
FatI	CATG	6 cut(s)	16, 160, 351, 666, 842, 970
FauI	CCCGC	2 cut(s)	396, 611
FbaI	TGATCA	1 cut(s)	942
Fnu4HI	GCNGC	4 cut(s)	198, 550, 589, 955
FokI	GGATG	4 cut(s)	189, 232, 495, 825
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	4 cut(s)	198, 550, 589, 955
FspBI	CTAG	5 cut(s)	468, 534, 540, 651, 828
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	4 cut(s)	198, 550, 589, 955
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	4 cut(s)	232, 472, 733, 904
HapII	CCGG	2 cut(s)	961, 1000
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	6 cut(s)	20, 164, 355, 670, 846, 974
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	2 cut(s)	430, 886
HindII	GTYRAC	2 cut(s)	430, 886
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	4 cut(s)	571, 612, 877, 935
HpaII	CCGG	2 cut(s)	961, 1000
HphI	GGTGA	4 cut(s)	120, 230, 651, 952
Hpy166II	GTNNAC	3 cut(s)	67, 430, 886
Hpy188I	TCNGA	7 cut(s)	34, 49, 274, 751, 934, 947, 979
Hpy188III	TCNNGA	3 cut(s)	143, 495, 871
Hpy8I	GTNNAC	3 cut(s)	67, 430, 886
HpyAV	CCTTC	5 cut(s)	110, 111, 252, 402, 873
HpyCH4III	ACNGT	2 cut(s)	268, 371
HpyCH4V	TGCA	3 cut(s)	67, 508, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 347, 485, 626
HpyF3I	CTNAG	3 cut(s)	88, 174, 978
Hsp92II	CATG	6 cut(s)	20, 164, 355, 670, 846, 974
HspAI	GCGC	1 cut(s)	477
Ksp22I	TGATCA	1 cut(s)	942
Kzo9I	GATC	9 cut(s)	25, 355, 461, 491, 497, 698, 853, 892, 942
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	3 cut(s)	376, 689, 951
Lsp1109I	GCAGC	4 cut(s)	184, 561, 600, 966
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	5 cut(s)	468, 534, 540, 651, 828
MaeIII	GTNAC	4 cut(s)	451, 524, 797, 822
MalI	GATC	9 cut(s)	27, 357, 463, 493, 499, 700, 855, 894, 944
MboI	GATC	9 cut(s)	25, 355, 461, 491, 497, 698, 853, 892, 942
MboII	GAAGA	4 cut(s)	17, 614, 708, 981
MflI	RGATCY	5 cut(s)	25, 355, 461, 497, 698
MhlI	GDGCHC	3 cut(s)	69, 381, 694
MluCI	AATT	3 cut(s)	234, 441, 655
MlyI	GAGTC	2 cut(s)	621, 929
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	8 cut(s)	16, 106, 145, 259, 585, 707, 941, 975
Mph1103I	ATGCAT	1 cut(s)	510
MseI	TTAA	2 cut(s)	38, 912
MslI	CAYNNNNRTG	2 cut(s)	300, 420
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	961, 1000
MspR9I	CCNGG	3 cut(s)	434, 585, 687
MvaI	CCWGG	3 cut(s)	434, 585, 687
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	4 cut(s)	170, 347, 485, 626
NcoI	CCATGG	2 cut(s)	351, 842
NdeII	GATC	9 cut(s)	25, 355, 461, 491, 497, 698, 853, 892, 942
NlaIII	CATG	6 cut(s)	20, 164, 355, 670, 846, 974
NlaIV	GGNNCC	2 cut(s)	602, 691
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	524
NsiI	ATGCAT	1 cut(s)	510
NspI	RCATGY	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	571, 877
PflFI	GACNNNGTC	2 cut(s)	562, 611
PfoI	TCCNGGA	1 cut(s)	685
PinAI	ACCGGT	1 cut(s)	999
PkrI	GCNGC	4 cut(s)	199, 551, 590, 956
PleI	GAGTC	2 cut(s)	620, 929
PpsI	GAGTC	2 cut(s)	620, 929
PshAI	GACNNNNGTC	1 cut(s)	973
Psp6I	CCWGG	3 cut(s)	432, 583, 685
PspGI	CCWGG	3 cut(s)	432, 583, 685
PspN4I	GGNNCC	2 cut(s)	602, 691
PspPI	GGNCC	3 cut(s)	230, 600, 731
PsuI	RGATCY	5 cut(s)	25, 355, 461, 497, 698
PsyI	GACNNNGTC	2 cut(s)	562, 611
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	2 cut(s)	300, 420
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	38, 912
SatI	GCNGC	4 cut(s)	198, 550, 589, 955
Sau3AI	GATC	9 cut(s)	25, 355, 461, 491, 497, 698, 853, 892, 942
Sau96I	GGNCC	3 cut(s)	230, 600, 731
SchI	GAGTC	2 cut(s)	621, 929
ScrFI	CCNGG	3 cut(s)	434, 585, 687
SduI	GDGCHC	3 cut(s)	69, 381, 694
SfaNI	GCATC	1 cut(s)	517
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	2 cut(s)	300, 420
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	3 cut(s)	234, 441, 655
SsiI	CCGC	2 cut(s)	389, 604
SspMI	CTAG	5 cut(s)	468, 534, 540, 651, 828
StyD4I	CCNGG	3 cut(s)	432, 583, 685
StyI	CCWWGG	3 cut(s)	351, 842, 916
TaaI	ACNGT	2 cut(s)	268, 371
TaqII	GACCGA	2 cut(s)	512, 903
TasI	AATT	3 cut(s)	234, 441, 655
TfiI	GAWTC	2 cut(s)	571, 877
Tru1I	TTAA	2 cut(s)	38, 912
Tru9I	TTAA	2 cut(s)	38, 912
TscAI	CASTG	4 cut(s)	74, 265, 741, 931
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	4 cut(s)	197, 549, 588, 954
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	8 cut(s)	93, 234, 384, 732, 777, 827, 855, 890
TspGWI	ACGGA	2 cut(s)	613, 810
TspRI	CASTG	4 cut(s)	74, 265, 741, 931
Tth111I	GACNNNGTC	2 cut(s)	562, 611
VneI	GTGCAC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	600
XceI	RCATGY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	2 cut(s)	299, 923
XspI	CTAG	5 cut(s)	468, 534, 540, 651, 828
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.