MD08G1111000.v1.1

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0005970
Physical Location & Seq
Reverse (-)
9769395 .. 9773639
4245 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1111000.v1.1.491

Sequence Viewer

Length: 492 bp
ATGTGTTGTGAACTAGTAGAAAATTGGGGTTTCAAGCAAATGACGAGATGGGTATGTGGGAAATGTTTGATTTTGCTTGGGTTTCTTGAGAGTTCAGCAACATCAGGTCTGTTTCCTGTTGGCATGCTTCTTTTGTTTCAGATGGGAGTCGACTCAATTGTGAAACATATATCAAACCAACAAGGTTGTGGTAGTGGAAATAATCTTTCTAAGATTACATTGGTTCAGCCTTACAATGTAAAGAGGGCAATGCCATGCCCTGATTGTCGGAAAATCGAGAAAGGTCCGTGGCTTTATTCTAATGGATGTCGTTCATTTCTGGAATTTAGCATGGATGACTGGACACACGATGAGGATCTGTACGATTTAAGTTATCTGAAATGGAGTAGATCGGTATTGAGTTTTTGCGAAAGGTCAAGTTATAAATGGAGAGTTGAGGTCAAAAGCATACTGAGCTTGATGATGAGCTGCAGACAGATAGCAGCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_11 zf-RING_2

Protein Analysis

164

Amino Acids

18.66

Weight (kDa)

8.32

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccI GTMKAC 1 cut(s) 150
AclWI GGATC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 1 cut(s) 34
AhlI ACTAGT 1 cut(s) 13
AluBI AGCT 2 cut(s) 456, 468
AluI AGCT 2 cut(s) 456, 468
AlwI GGATC 1 cut(s) 363
ApeKI GCWGC 2 cut(s) 468, 482
ApoI RAATTY 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 455
BccI CCATC 2 cut(s) 42, 136
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 469
BisI GCNGC 2 cut(s) 469, 483
BlsI GCNGC 2 cut(s) 470, 484
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 2 cut(s) 311, 340
BseJI GATNNNNATC 1 cut(s) 354
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 455
Bsp143I GATC 2 cut(s) 355, 389
BspCNI CTCAG 1 cut(s) 444
BspMAI CTGCAG 1 cut(s) 473
BspPI GGATC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 2 cut(s) 355, 389
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 210, 452
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 311, 340
BstKTI GATC 2 cut(s) 358, 392
BstMBI GATC 2 cut(s) 355, 389
BstMWI GCNNNNNNNGC 1 cut(s) 453
BstNSI RCATGY 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 2 cut(s) 311, 340
Cac8I GCNNGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 361
CviAII CATG 3 cut(s) 124, 255, 331
CviJI RGCY 5 cut(s) 229, 292, 456, 468, 485
CviKI_1 RGCY 5 cut(s) 229, 292, 456, 468, 485
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 2 cut(s) 210, 452
DpnI GATC 2 cut(s) 357, 391
DpnII GATC 2 cut(s) 355, 389
Eco47I GGWCC 1 cut(s) 284
FaeI CATG 3 cut(s) 127, 258, 334
FaiI YATR 8 cut(s) 55, 125, 168, 170, 256, 332, 423, 449
FatI CATG 3 cut(s) 123, 254, 330
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 469, 483
FokI GGATG 2 cut(s) 318, 347
Fsp4HI GCNGC 2 cut(s) 469, 483
FspBI CTAG 1 cut(s) 14
GluI GCNGC 2 cut(s) 469, 483
Hin1II CATG 3 cut(s) 127, 258, 334
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 2 cut(s) 147, 152
Hpy166II GTNNAC 2 cut(s) 11, 151
Hpy188I TCNGA 3 cut(s) 141, 270, 378
Hpy188III TCNNGA 3 cut(s) 86, 277, 320
Hpy8I GTNNAC 2 cut(s) 11, 151
HpyCH4V TGCA 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 453
HpyF3I CTNAG 2 cut(s) 210, 452
Hsp92II CATG 3 cut(s) 127, 258, 334
Kzo9I GATC 2 cut(s) 355, 389
LpnPI CCDG 5 cut(s) 90, 129, 273, 305, 325
Lsp1109I GCAGC 1 cut(s) 455
MaeI CTAG 1 cut(s) 14
MalI GATC 2 cut(s) 357, 391
MboI GATC 2 cut(s) 355, 389
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 355
MluCI AATT 3 cut(s) 22, 156, 323
MlyI GAGTC 2 cut(s) 146, 156
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 3 cut(s) 237, 346, 430
MseI TTAA 1 cut(s) 368
MunI CAATTG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 453
NdeII GATC 2 cut(s) 355, 389
NlaIII CATG 3 cut(s) 127, 258, 334
NspI RCATGY 1 cut(s) 127
PaeI GCATGC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 470, 484
PleI GAGTC 2 cut(s) 146, 155
PpsI GAGTC 2 cut(s) 146, 155
PsiI TTATAA 1 cut(s) 423
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 473
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SalI GTCGAC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 2 cut(s) 469, 483
Sau3AI GATC 2 cut(s) 355, 389
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 2 cut(s) 146, 156
SetI ASST 7 cut(s) 109, 187, 286, 416, 441, 458, 470
SfcI CTRYAG 1 cut(s) 469
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SpeI ACTAGT 1 cut(s) 13
SphI GCATGC 1 cut(s) 127
Sse9I AATT 3 cut(s) 22, 156, 323
SspMI CTAG 1 cut(s) 14
TaqI TCGA 2 cut(s) 150, 276
TasI AATT 3 cut(s) 22, 156, 323
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TseI GCWGC 2 cut(s) 468, 482
TspDTI ATGAA 1 cut(s) 303
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 323
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.