Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000046.1

Orthogroup ID

OG0005970

Physical Location & Seq

Genomic Coordinates Forward (+)

26731 .. 33503

Gene Structure 6773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000046.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgggtctgggcagcgatgaagaggtggagagagagatttggatgtttgatttgtacatcaaatttcccagaacaccatctctgacgactcacgcgtctttcttcgtctccgcttctgatccccacgacgtcgtttcgggcgatgaagaggttgttgttgaagaaagcgatggcgtcggtggcgatggtggtggtggtggttgtggaggcaagtcgtacggtggctctgtgtcctgctcgatttgccttgaagtcgtcgccgataatggggatagatcttgggccaagctgcaatgtgggcatgaatttcatctagattgcattggttcggcgtttaatataaagggcgcaatgcaatgccctaattgtcggaagattgagaaaggtcaatggctttatgctaatggctgccgttcatttccagattttagcatggatgactggaaccatgatgaagatctgtatgatctaagttattccgaaatgtcctttggtgttcactggtgtccatttggtagcttagcaagacttccttcatcatttgaggaaggagagttctcaccaacttcatatcatgatttacttggacagcatgccatctttgctgagcatacagctgtatcatctgctgctcatccttgcccatatattgcttactttggaccaatccacccctcatcctctaattcaagtggaagtgtttcagaagcttccaactttaaccaccattggactggcacatctgtacctagtgaactaccaagctcctatgcttttcctgccatggatcttcattaccacagttgggagcaccattcccctccattctctacaaccagcagtcatattggtggggttgaccaaacttcaatcccatctgtgactcaaagatctgctaggtcgagttcggagataccaagatcaggatctttcatgcatccctttcttgttggtcacagttcggtctcgggtatcacattttcagggaccgaagcccgaaccgacccgaatcttgtatcagttgccatatgccagtccttgattgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

349

Amino Acids

37.65

Weight (kDa)

4.94

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05545
fragaria_vesca	FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620
malus_domestica	MD04G1199600.v1.1 MD08G1111000.v1.1 MD12G1212400.v1.1
prunus_persica	Prupe.6G320100_v2.0.a1 Prupe.6G320100_v2.0.a1
pyrus_communis	pycom04g17630 pycom12g19860
rosa_chinensis	RchiOBHm_Chr3g0455821
rosa_laevigata	RLG00000025329
rosa_multiflora	Rmu_ssc0000046.1_g000008 Rmu_ssc0000046.1_g000018
rosa_roxburghii	Rroxscaffold_6G00423430 Rroxscaffold_6G00423930
rosa_rugosa	Rorug03G0010900 Rorug03G0011000
rosa_samantha	Rh3AG069800 Rh3BG072400 Rh3CG070600 Rh3DG073100
rosa_wichuraiana	Rw3G005670 Rw3G006020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AatII	GACGTC	1 cut(s)	132
AccII	CGCG	1 cut(s)	95
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	3 cut(s)	113, 795, 934
AcsI	RAATTY	2 cut(s)	62, 305
AcyI	GRCGYC	2 cut(s)	129, 174
AfaI	GTAC	3 cut(s)	56, 218, 747
AfiI	CCNNNNNNNGG	4 cut(s)	267, 805, 923, 1044
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	161, 251, 690, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
AluBI	AGCT	5 cut(s)	289, 519, 617, 710, 765
AluI	AGCT	5 cut(s)	289, 519, 617, 710, 765
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	2 cut(s)	112, 970
AlwI	GGATC	3 cut(s)	113, 795, 934
Ama87I	CYCGRG	1 cut(s)	967
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	4 cut(s)	12, 289, 408, 629
ApoI	RAATTY	2 cut(s)	62, 305
Asp700I	GAANNNNTTC	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	3 cut(s)	282, 662, 987
AsuHPI	GGTGA	1 cut(s)	552
AvaI	CYCGRG	1 cut(s)	967
AvaII	GGWCC	2 cut(s)	662, 987
BaeI	ACNNNNGTAYC	4 cut(s)	603, 636, 729, 762
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	4 cut(s)	24, 276, 395, 616
BccI	CCATC	5 cut(s)	85, 164, 179, 605, 883
BceAI	ACGGC	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	112, 970
BfaI	CTAG	3 cut(s)	314, 750, 897
BglII	AGATCT	3 cut(s)	275, 457, 890
BisI	GCNGC	4 cut(s)	13, 290, 409, 630
BlpI	GCTNAGC	2 cut(s)	520, 606
BlsI	GCNGC	4 cut(s)	14, 291, 410, 631
Bme18I	GGWCC	2 cut(s)	662, 987
BmeT110I	CYCGRG	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	282, 662, 987
BmiI	GGNNCC	2 cut(s)	446, 988
BmsI	GCATC	1 cut(s)	946
Bpu1102I	GCTNAGC	2 cut(s)	520, 606
BsaBI	GATNNNNATC	2 cut(s)	456, 925
BsaHI	GRCGYC	2 cut(s)	129, 174
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	1 cut(s)	783
Bsc4I	CCNNNNNNNGG	4 cut(s)	267, 805, 923, 1044
Bse1I	ACTGG	4 cut(s)	446, 506, 739, 1033
Bse3DI	GCAATG	3 cut(s)	299, 357, 362
Bse8I	GATNNNNATC	2 cut(s)	456, 925
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	5 cut(s)	48, 442, 634, 677, 937
BseJI	GATNNNNATC	2 cut(s)	456, 925
BseLI	CCNNNNNNNGG	4 cut(s)	267, 805, 923, 1044
BseMI	GCAATG	3 cut(s)	299, 357, 362
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	4 cut(s)	446, 506, 739, 1033
BseXI	GCAGC	4 cut(s)	24, 276, 395, 616
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	813
BsiHKCI	CYCGRG	1 cut(s)	967
BsiWI	CGTACG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	1000
BslI	CCNNNNNNNGG	4 cut(s)	267, 805, 923, 1044
BsmAI	GTCTC	2 cut(s)	112, 970
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	1000
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	970
BsoBI	CYCGRG	1 cut(s)	967
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	8 cut(s)	118, 275, 457, 466, 787, 890, 920, 926
Bsp1720I	GCTNAGC	2 cut(s)	520, 606
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	446, 988
BspPI	GGATC	3 cut(s)	113, 795, 934
BspTNI	GGTCTC	1 cut(s)	970
BsrDI	GCAATG	3 cut(s)	299, 357, 362
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	4 cut(s)	446, 506, 739, 1033
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	8 cut(s)	118, 275, 457, 466, 787, 890, 920, 926
BssNI	GRCGYC	2 cut(s)	129, 174
BssT1I	CCWWGG	1 cut(s)	783
Bst4CI	ACNGT	3 cut(s)	221, 803, 959
Bst6I	CTCTTC	2 cut(s)	15, 141
BstACI	GRCGYC	2 cut(s)	129, 174
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	3 cut(s)	470, 520, 606
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	5 cut(s)	48, 442, 634, 677, 937
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	8 cut(s)	121, 278, 460, 469, 790, 893, 923, 929
BstMAI	GTCTC	2 cut(s)	112, 970
BstMBI	GATC	8 cut(s)	118, 275, 457, 466, 787, 890, 920, 926
BstMWI	GCNNNNNNNGC	5 cut(s)	180, 243, 298, 602, 779
BstNSI	RCATGY	1 cut(s)	596
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	24, 276, 395, 616
BstX2I	RGATCY	5 cut(s)	275, 457, 787, 890, 926
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	5 cut(s)	275, 457, 787, 890, 926
BsuRI	GGCC	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	783
BtgZI	GCGATG	4 cut(s)	30, 156, 183, 198
BtsCI	GGATG	5 cut(s)	48, 442, 634, 677, 937
BtsIMutI	CAGTG	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	594
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	282, 662, 987
CseI	GACGC	2 cut(s)	84, 163
Csp6I	GTAC	3 cut(s)	55, 217, 746
CviAII	CATG	7 cut(s)	302, 433, 449, 575, 593, 784, 934
CviQI	GTAC	3 cut(s)	55, 217, 746
DdeI	CTNAG	3 cut(s)	470, 520, 606
DpnI	GATC	8 cut(s)	120, 277, 459, 468, 789, 892, 922, 928
DpnII	GATC	8 cut(s)	118, 275, 457, 466, 787, 890, 920, 926
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	15, 141
EarI	CTCTTC	2 cut(s)	15, 141
Eco130I	CCWWGG	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	970
Eco47I	GGWCC	2 cut(s)	662, 987
Eco88I	CYCGRG	1 cut(s)	967
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	783
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	7 cut(s)	305, 436, 452, 578, 596, 787, 937
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FaqI	GGGAC	1 cut(s)	1000
FatI	CATG	7 cut(s)	301, 432, 448, 574, 592, 783, 933
FauNDI	CATATG	1 cut(s)	1028
Fnu4HI	GCNGC	4 cut(s)	13, 290, 409, 630
FokI	GGATG	5 cut(s)	55, 449, 621, 664, 924
Fsp4HI	GCNGC	4 cut(s)	13, 290, 409, 630
FspBI	CTAG	3 cut(s)	314, 750, 897
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	4 cut(s)	13, 290, 409, 630
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	2 cut(s)	84, 163
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	2 cut(s)	129, 174
Hin1II	CATG	7 cut(s)	305, 436, 452, 578, 596, 787, 937
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	3 cut(s)	88, 883, 1009
HphI	GGTGA	1 cut(s)	552
Hpy166II	GTNNAC	3 cut(s)	499, 755, 859
Hpy188I	TCNGA	6 cut(s)	84, 118, 372, 481, 706, 910
Hpy188III	TCNNGA	4 cut(s)	314, 422, 575, 924
Hpy8I	GTNNAC	3 cut(s)	499, 755, 859
Hpy99I	CGWCG	4 cut(s)	131, 134, 179, 260
HpyAV	CCTTC	2 cut(s)	542, 543
HpyCH4III	ACNGT	3 cut(s)	221, 803, 959
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	292, 321, 355, 937
HpyF10VI	GCNNNNNNNGC	5 cut(s)	180, 243, 298, 602, 779
HpyF3I	CTNAG	3 cut(s)	470, 520, 606
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	2 cut(s)	129, 174
Hsp92II	CATG	7 cut(s)	305, 436, 452, 578, 596, 787, 937
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	8 cut(s)	118, 275, 457, 466, 787, 890, 920, 926
LmnI	GCTCC	2 cut(s)	770, 808
Lsp1109I	GCAGC	4 cut(s)	24, 276, 395, 616
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	3 cut(s)	314, 750, 897
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	880, 953
MalI	GATC	8 cut(s)	120, 277, 459, 468, 789, 892, 922, 928
MboI	GATC	8 cut(s)	118, 275, 457, 466, 787, 890, 920, 926
MboII	GAAGA	7 cut(s)	32, 94, 158, 173, 385, 467, 782
MflI	RGATCY	5 cut(s)	275, 457, 787, 890, 926
MhlI	GDGCHC	1 cut(s)	813
MluCI	AATT	4 cut(s)	62, 305, 364, 685
MluI	ACGCGT	1 cut(s)	93
MlyI	GAGTC	2 cut(s)	82, 877
MmeI	TCCRAC	2 cut(s)	350, 738
MnlI	CCTC	7 cut(s)	16, 142, 200, 538, 685, 691, 831
Mph1103I	ATGCAT	1 cut(s)	939
MroXI	GAANNNNTTC	1 cut(s)	700
MseI	TTAA	2 cut(s)	336, 720
MslI	CAYNNNNRTG	1 cut(s)	849
MspA1I	CMGCKG	1 cut(s)	617
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	5 cut(s)	180, 243, 298, 602, 779
NcoI	CCATGG	1 cut(s)	783
NdeI	CATATG	1 cut(s)	1028
NdeII	GATC	8 cut(s)	118, 275, 457, 466, 787, 890, 920, 926
NlaIII	CATG	7 cut(s)	305, 436, 452, 578, 596, 787, 937
NlaIV	GGNNCC	2 cut(s)	446, 988
NmuCI	GTSAC	2 cut(s)	880, 953
NsiI	ATGCAT	1 cut(s)	939
NspI	RCATGY	1 cut(s)	596
PaeI	GCATGC	1 cut(s)	596
PagI	TCATGA	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 138
PdmI	GAANNNNTTC	1 cut(s)	700
PfeI	GAWTC	1 cut(s)	1009
Pfl23II	CGTACG	1 cut(s)	216
PkrI	GCNGC	4 cut(s)	14, 291, 410, 631
PleI	GAGTC	2 cut(s)	82, 877
PpsI	GAGTC	2 cut(s)	82, 877
PspLI	CGTACG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	446, 988
PspPI	GGNCC	3 cut(s)	282, 662, 987
PsuI	RGATCY	5 cut(s)	275, 457, 787, 890, 926
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	3 cut(s)	56, 218, 747
RsaNI	GTAC	3 cut(s)	55, 217, 746
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	2 cut(s)	336, 720
SatI	GCNGC	4 cut(s)	13, 290, 409, 630
Sau3AI	GATC	8 cut(s)	118, 275, 457, 466, 787, 890, 920, 926
Sau96I	GGNCC	3 cut(s)	282, 662, 987
SchI	GAGTC	2 cut(s)	82, 877
SduI	GDGCHC	1 cut(s)	813
SfaNI	GCATC	1 cut(s)	946
SinI	GGWCC	2 cut(s)	662, 987
SmiMI	CAYNNNNRTG	1 cut(s)	849
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	4 cut(s)	62, 305, 364, 685
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	3 cut(s)	314, 750, 897
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	3 cut(s)	221, 803, 959
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	239, 902
TaqII	GACCGA	2 cut(s)	952, 1004
TasI	AATT	4 cut(s)	62, 305, 364, 685
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	1009
Tru1I	TTAA	2 cut(s)	336, 720
Tru9I	TTAA	2 cut(s)	336, 720
TscAI	CASTG	1 cut(s)	506
TseFI	GTSAC	2 cut(s)	880, 953
TseI	GCWGC	4 cut(s)	12, 289, 408, 629
Tsp45I	GTSAC	2 cut(s)	880, 953
TspRI	CASTG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	662, 987
XapI	RAATTY	2 cut(s)	62, 305
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	2 cut(s)	731, 1040
XmnI	GAANNNNTTC	1 cut(s)	700
XspI	CTAG	3 cut(s)	314, 750, 897
ZraI	GACGTC	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.