Prupe.6G320100_v2.0.a1

RING-like zinc finger

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
28346108 .. 28352356
6249 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G320100.2

Sequence Viewer

Length: 1305 bp
ATGGGGCTCGGAAGCGATGAAGAGGTCGTCGTTGAAGACAGCGATGGTGTTGGTGGTGGCGGTGGTTGTGGAGGCAAGTCGTACGGAGGCTCTGTCTCCTGCTCGATTTGCCTTGAAGTCGTCGCCGATAATGGGGACAGATCTTGGGCCAAGCTGCAATGTGGGCATCAATTTCATCTAGATTGCATTGGTTCAGCCTTCAATATAAAGGGGGCAATGCAATGCCCTAATTGTCGGAAGATCGAGAAAGGTCAATGGCTTTATGCTAATGGATACCGTTCAATTCAAGAATTTGGCGTGGATGACTGGACCCATGATGAAGATCTTTATGATCTTGGTTACTCTGAAATGTCCTTTGGTGTTCACTGGTGTCCATTTGGTAGCTTAGCACGACTTCCTTCATCATTTGAGGAAGGGGAGTTCTCGCCAACTTCATATCATGATTTACTTGGACAACATGCCATCTTTGCTGAGCATACAGCTGTATCATCTGCTGGTCATCCTTGCCCATATATTGCTTACTTTGGGCCAATTCACCCGTCATCCTCAAACTCCAGTGGAAGTGTGTCAGAAGCTTCCAACTTTAACCATCATTGGAGTGGCACATCAGTACCTAGTGAAATACCAAACTCCTATGCTTTTCCTGCCATGGATCTTCATTATCACAGTTGGGAGCACCATTCCCCGCCTCCATTTTCTACAACCAACAATCATATTGGTGGCGCTGAGCAGGGTTCAATTCCATCTGTTACTCAAAGATCTGCTAGGCCGAGTTCAGATTTACCAAGATCAGGATCTTTTATGCACCCATTCCTTGTTGGTCACAGTTCTAGTGCTAGAGCTGGCAGCTCTGTCACGTCTTCAATGATTCCTCCTTATCCAGGCAGCAATGCCCGGGCCCGTGACAGAGTCCAAGCTCTCCAGGCATACTATCAACAACAACAACCTAGTAATTCACCAACCATGCGGACACCCATAATTCAAGGAGCCCGAAGATCCAGCAGTCAAAGAGGCGTGGCTCAAGTAGGGCCAGTGGCTTCATCATCGGATCAAAATGGTGGTTTCTATTTTTTCCCCTCTGGCTCATCAGGTCGTAATTATCAAGAAGCTGAAAATCCTTTACCTAATCGTTTTCATGCATGGGAAAGAGATCACTTGCCTTCATTCTCGATGAATCAGGTTGACCGAGACCAAGGTTGGGCTGCTGTTCACCAGGGTGGCAGTGGGTCAGACTCAGCGATGAGAGGGAACAGCTTCCGGCAAAGGCATGGGTCCGAGAGGACACCTTCACAAAATCGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

46.95

Weight (kDa)

6.03

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 60, 686, 967
AclWI GGATC 4 cut(s) 660, 802, 990, 1056
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 2 cut(s) 83, 612
AfiI CCNNNNNNNGG 4 cut(s) 132, 791, 881, 1198
AgsI TTSAA 8 cut(s) 35, 116, 202, 282, 287, 738, 864, 983
AjiI CACGTC 1 cut(s) 858
AjnI CCWGG 3 cut(s) 880, 921, 1212
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AleI CACNNNNGTG 1 cut(s) 1215
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
AluBI AGCT 9 cut(s) 154, 384, 482, 575, 842, 849, 917, 1109, 1254
AluI AGCT 9 cut(s) 154, 384, 482, 575, 842, 849, 917, 1109, 1254
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 2 cut(s) 100, 1182
AlwI GGATC 4 cut(s) 660, 802, 990, 1056
Ama87I CYCGRG 1 cut(s) 894
AoxI GGCC 5 cut(s) 147, 527, 767, 897, 1028
ApaI GGGCCC 1 cut(s) 901
ApeKI GCWGC 4 cut(s) 154, 846, 885, 1202
ApoI RAATTY 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 1253
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 7 cut(s) 147, 309, 527, 897, 898, 1028, 1272
AsuC2I CCSGG 2 cut(s) 895, 896
AsuHPI GGTGA 3 cut(s) 527, 948, 1202
AvaI CYCGRG 1 cut(s) 894
AvaII GGWCC 2 cut(s) 309, 1272
BaeGI GKGCMC 1 cut(s) 901
BaeI ACNNNNGTAYC 4 cut(s) 468, 501, 594, 627
BanII GRGCYC 3 cut(s) 9, 901, 991
BbsI GAAGAC 2 cut(s) 42, 852
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 4 cut(s) 141, 858, 897, 1189
BccI CCATC 4 cut(s) 38, 470, 597, 751
BciT130I CCWGG 3 cut(s) 882, 923, 1214
BciVI GTATCC 1 cut(s) 266
BcnI CCSGG 2 cut(s) 895, 896
BcoDI GTCTC 2 cut(s) 100, 1182
BfaI CTAG 6 cut(s) 179, 615, 765, 831, 837, 948
BfoI RGCGCY 1 cut(s) 726
BfuI GTATCC 1 cut(s) 266
BglII AGATCT 3 cut(s) 140, 322, 758
BisI GCNGC 4 cut(s) 155, 847, 886, 1203
BlpI GCTNAGC 3 cut(s) 385, 471, 726
BlsI GCNGC 4 cut(s) 156, 848, 887, 1204
Bme1390I CCNGG 5 cut(s) 882, 895, 896, 923, 1214
Bme18I GGWCC 2 cut(s) 309, 1272
BmeT110I CYCGRG 1 cut(s) 894
BmgBI CACGTC 1 cut(s) 858
BmgT120I GGNCC 7 cut(s) 147, 309, 527, 897, 898, 1028, 1272
BmiI GGNNCC 4 cut(s) 311, 899, 988, 1273
BmrFI CCNGG 5 cut(s) 882, 895, 896, 923, 1214
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 2 cut(s) 42, 852
BpmI CTGGAG 2 cut(s) 538, 905
Bpu1102I GCTNAGC 3 cut(s) 385, 471, 726
BpuEI CTTGAG 1 cut(s) 1005
BpuMI CCSGG 2 cut(s) 895, 896
BsaBI GATNNNNATC 2 cut(s) 321, 793
BsaI GGTCTC 1 cut(s) 1182
BsaJI CCNNGG 4 cut(s) 648, 894, 1192, 1213
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 791, 881, 1198
Bse1I ACTGG 4 cut(s) 311, 371, 555, 1031
Bse3DI GCAATG 4 cut(s) 164, 222, 227, 895
Bse8I GATNNNNATC 2 cut(s) 321, 793
BseBI CCWGG 3 cut(s) 882, 923, 1214
BseDI CCNNGG 4 cut(s) 648, 894, 1192, 1213
BseGI GGATG 3 cut(s) 307, 499, 542
BseJI GATNNNNATC 2 cut(s) 321, 793
BseLI CCNNNNNNNGG 4 cut(s) 132, 791, 881, 1198
BseMI GCAATG 4 cut(s) 164, 222, 227, 895
BseMII CTCAG 3 cut(s) 462, 717, 1248
BseNI ACTGG 4 cut(s) 311, 371, 555, 1031
BseSI GKGCMC 1 cut(s) 901
BseXI GCAGC 4 cut(s) 141, 858, 897, 1189
BshFI GGCC 5 cut(s) 149, 529, 769, 899, 1030
BsiHKAI GWGCWC 1 cut(s) 678
BsiHKCI CYCGRG 1 cut(s) 894
BsiSI CCGG 2 cut(s) 895, 1258
BsiWI CGTACG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 4 cut(s) 132, 791, 881, 1198
BsmAI GTCTC 2 cut(s) 100, 1182
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 5 cut(s) 149, 529, 769, 899, 1030
Bso31I GGTCTC 1 cut(s) 1182
BsoBI CYCGRG 1 cut(s) 894
Bsp120I GGGCCC 1 cut(s) 897
Bsp1286I GDGCHC 4 cut(s) 9, 678, 901, 991
Bsp1720I GCTNAGC 3 cut(s) 385, 471, 726
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 3 cut(s) 60, 686, 967
BspANI GGCC 5 cut(s) 149, 529, 769, 899, 1030
BspCNI CTCAG 3 cut(s) 463, 718, 1247
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 311, 899, 988, 1273
BspPI GGATC 4 cut(s) 660, 802, 990, 1056
BspTNI GGTCTC 1 cut(s) 1182
BsrDI GCAATG 4 cut(s) 164, 222, 227, 895
BsrI ACTGG 4 cut(s) 311, 371, 555, 1031
BssECI CCNNGG 4 cut(s) 648, 894, 1192, 1213
BssT1I CCWWGG 2 cut(s) 648, 1192
Bst2UI CCWGG 3 cut(s) 882, 923, 1214
Bst4CI ACNGT 3 cut(s) 278, 668, 827
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 844
BstDEI CTNAG 4 cut(s) 385, 471, 726, 1234
BstDSI CCRYGG 1 cut(s) 648
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 3 cut(s) 307, 499, 542
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 1 cut(s) 725
BstMAI GTCTC 2 cut(s) 100, 1182
BstMWI GCNNNNNNNGC 5 cut(s) 108, 163, 467, 644, 923
BstNI CCWGG 3 cut(s) 882, 923, 1214
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 5 cut(s) 880, 893, 894, 921, 1212
BstSLI GKGCMC 1 cut(s) 901
BstV1I GCAGC 4 cut(s) 141, 858, 897, 1189
BstV2I GAAGAC 2 cut(s) 42, 852
BstX2I RGATCY 6 cut(s) 140, 322, 652, 758, 794, 995
BstYI RGATCY 6 cut(s) 140, 322, 652, 758, 794, 995
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 5 cut(s) 149, 529, 769, 899, 1030
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 3 cut(s) 30, 57, 1253
BtrI CACGTC 1 cut(s) 858
BtsCI GGATG 3 cut(s) 307, 499, 542
BtsI GCAGTG 1 cut(s) 1228
BtsIMutI CAGTG 4 cut(s) 364, 562, 1038, 1228
Cac8I GCNNGC 1 cut(s) 844
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 725
Cfr13I GGNCC 7 cut(s) 147, 309, 527, 897, 898, 1028, 1272
Cfr9I CCCGGG 1 cut(s) 894
Csp6I GTAC 2 cut(s) 82, 611
CviAII CATG 8 cut(s) 314, 440, 458, 649, 964, 1136, 1140, 1268
CviQI GTAC 2 cut(s) 82, 611
DdeI CTNAG 4 cut(s) 385, 471, 726, 1234
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 648, 1192
Eco24I GRGCYC 3 cut(s) 9, 901, 991
Eco31I GGTCTC 1 cut(s) 1182
Eco47I GGWCC 2 cut(s) 309, 1272
Eco88I CYCGRG 1 cut(s) 894
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoRII CCWGG 3 cut(s) 880, 921, 1212
EcoT14I CCWWGG 2 cut(s) 648, 1192
EcoT22I ATGCAT 1 cut(s) 1141
EcoT38I GRGCYC 3 cut(s) 9, 901, 991
ErhI CCWWGG 2 cut(s) 648, 1192
FaeI CATG 8 cut(s) 317, 443, 461, 652, 967, 1139, 1143, 1271
FaqI GGGAC 1 cut(s) 149
FatI CATG 8 cut(s) 313, 439, 457, 648, 963, 1135, 1139, 1267
FauI CCCGC 1 cut(s) 693
Fnu4HI GCNGC 4 cut(s) 155, 847, 886, 1203
FokI GGATG 3 cut(s) 314, 486, 529
FriOI GRGCYC 3 cut(s) 9, 901, 991
Fsp4HI GCNGC 4 cut(s) 155, 847, 886, 1203
FspBI CTAG 6 cut(s) 179, 615, 765, 831, 837, 948
GlaI GCGC 1 cut(s) 724
GluI GCNGC 4 cut(s) 155, 847, 886, 1203
GsuI CTGGAG 2 cut(s) 538, 905
HaeII RGCGCY 1 cut(s) 726
HaeIII GGCC 5 cut(s) 149, 529, 769, 899, 1030
HapII CCGG 2 cut(s) 895, 1258
HhaI GCGC 1 cut(s) 725
Hin1II CATG 8 cut(s) 317, 443, 461, 652, 967, 1139, 1143, 1271
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 4 cut(s) 868, 909, 1174, 1232
HpaII CCGG 2 cut(s) 895, 1258
HphI GGTGA 3 cut(s) 527, 948, 1202
Hpy166II GTNNAC 3 cut(s) 364, 1183, 1210
Hpy188I TCNGA 8 cut(s) 11, 237, 346, 571, 778, 1048, 1231, 1276
Hpy188III TCNNGA 7 cut(s) 179, 244, 287, 440, 792, 1103, 1168
Hpy8I GTNNAC 3 cut(s) 364, 1183, 1210
Hpy99I CGWCG 2 cut(s) 32, 125
HpyAV CCTTC 5 cut(s) 208, 407, 408, 1170, 1296
HpyCH4III ACNGT 3 cut(s) 278, 668, 827
HpyCH4IV ACGT 1 cut(s) 857
HpyCH4V TGCA 5 cut(s) 157, 186, 220, 805, 1139
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 163, 467, 644, 923
HpyF3I CTNAG 4 cut(s) 385, 471, 726, 1234
HpySE526I ACGT 1 cut(s) 857
Hsp92II CATG 8 cut(s) 317, 443, 461, 652, 967, 1139, 1143, 1271
HspAI GCGC 1 cut(s) 723
LmnI GCTCC 2 cut(s) 673, 986
Lsp1109I GCAGC 4 cut(s) 141, 858, 897, 1189
LweI GCATC 1 cut(s) 175
MaeI CTAG 6 cut(s) 179, 615, 765, 831, 837, 948
MaeII ACGT 1 cut(s) 857
MaeIII GTNAC 5 cut(s) 338, 748, 821, 853, 902
MboII GAAGA 7 cut(s) 32, 47, 250, 332, 647, 852, 1005
MflI RGATCY 6 cut(s) 140, 322, 652, 758, 794, 995
MhlI GDGCHC 4 cut(s) 9, 678, 901, 991
MluCI AATT 9 cut(s) 170, 229, 282, 290, 531, 738, 952, 978, 1096
MlyI GAGTC 2 cut(s) 918, 1226
MmeI TCCRAC 2 cut(s) 215, 603
Mph1103I ATGCAT 1 cut(s) 1141
MroXI GAANNNNTTC 1 cut(s) 1253
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 3 cut(s) 597, 717, 1215
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 2 cut(s) 895, 1258
MspR9I CCNGG 5 cut(s) 882, 895, 896, 923, 1214
MvaI CCWGG 3 cut(s) 882, 923, 1214
MwoI GCNNNNNNNGC 5 cut(s) 108, 163, 467, 644, 923
NciI CCSGG 2 cut(s) 895, 896
NcoI CCATGG 1 cut(s) 648
NlaIII CATG 8 cut(s) 317, 443, 461, 652, 967, 1139, 1143, 1271
NlaIV GGNNCC 4 cut(s) 311, 899, 988, 1273
NmeAIII GCCGAG 1 cut(s) 795
NmuCI GTSAC 3 cut(s) 821, 853, 902
NsiI ATGCAT 1 cut(s) 1141
NspI RCATGY 1 cut(s) 461
OliI CACNNNNGTG 1 cut(s) 1215
PagI TCATGA 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 1253
PfeI GAWTC 2 cut(s) 868, 1174
Pfl23II CGTACG 1 cut(s) 81
PflFI GACNNNGTC 1 cut(s) 908
PkrI GCNGC 4 cut(s) 156, 848, 887, 1204
PleI GAGTC 2 cut(s) 917, 1226
PpsI GAGTC 2 cut(s) 917, 1226
Psp6I CCWGG 3 cut(s) 880, 921, 1212
PspGI CCWGG 3 cut(s) 880, 921, 1212
PspLI CGTACG 1 cut(s) 81
PspN4I GGNNCC 4 cut(s) 311, 899, 988, 1273
PspOMI GGGCCC 1 cut(s) 897
PspPI GGNCC 7 cut(s) 147, 309, 527, 897, 898, 1028, 1272
PsuI RGATCY 6 cut(s) 140, 322, 652, 758, 794, 995
PsyI GACNNNGTC 1 cut(s) 908
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 83, 612
RsaNI GTAC 2 cut(s) 82, 611
RseI CAYNNNNRTG 3 cut(s) 597, 717, 1215
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 4 cut(s) 155, 847, 886, 1203
Sau96I GGNCC 7 cut(s) 147, 309, 527, 897, 898, 1028, 1272
SchI GAGTC 2 cut(s) 918, 1226
ScrFI CCNGG 5 cut(s) 882, 895, 896, 923, 1214
SduI GDGCHC 4 cut(s) 9, 678, 901, 991
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 2 cut(s) 309, 1272
SmaI CCCGGG 1 cut(s) 896
SmiMI CAYNNNNRTG 3 cut(s) 597, 717, 1215
SmlI CTYRAG 1 cut(s) 1020
SmoI CTYRAG 1 cut(s) 1020
SrfI GCCCGGGC 1 cut(s) 896
Sse9I AATT 9 cut(s) 170, 229, 282, 290, 531, 738, 952, 978, 1096
SsiI CCGC 3 cut(s) 60, 686, 967
SspMI CTAG 6 cut(s) 179, 615, 765, 831, 837, 948
StyD4I CCNGG 5 cut(s) 880, 893, 894, 921, 1212
StyI CCWWGG 2 cut(s) 648, 1192
TaaI ACNGT 3 cut(s) 278, 668, 827
TaiI ACGT 1 cut(s) 860
TaqI TCGA 3 cut(s) 104, 243, 1169
TaqII GACCGA 2 cut(s) 1200, 1287
TasI AATT 9 cut(s) 170, 229, 282, 290, 531, 738, 952, 978, 1096
TfiI GAWTC 2 cut(s) 868, 1174
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 4 cut(s) 371, 562, 1038, 1228
TseFI GTSAC 3 cut(s) 821, 853, 902
TseI GCWGC 4 cut(s) 154, 846, 885, 1202
Tsp45I GTSAC 3 cut(s) 821, 853, 902
TspGWI ACGGA 1 cut(s) 99
TspMI CCCGGG 1 cut(s) 894
TspRI CASTG 4 cut(s) 371, 562, 1038, 1228
Tth111I GACNNNGTC 1 cut(s) 908
VpaK11BI GGWCC 2 cut(s) 309, 1272
XagI CCTNNNNNAGG 1 cut(s) 879
XapI RAATTY 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 2 cut(s) 596, 1220
XmaI CCCGGG 1 cut(s) 894
XmnI GAANNNNTTC 1 cut(s) 1253
XspI CTAG 6 cut(s) 179, 615, 765, 831, 837, 948
Zsp2I ATGCAT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.