RING-like zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05545 |
| fragaria_vesca | FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 |
| malus_domestica | MD04G1199600.v1.1 MD08G1111000.v1.1 MD12G1212400.v1.1 |
| prunus_persica | Prupe.6G320100_v2.0.a1 Prupe.6G320100_v2.0.a1 |
| pyrus_communis | pycom04g17630 pycom12g19860 |
| rosa_chinensis | RchiOBHm_Chr3g0455821 |
| rosa_laevigata | RLG00000025329 |
| rosa_multiflora | Rmu_ssc0000046.1_g000008 Rmu_ssc0000046.1_g000018 |
| rosa_roxburghii | Rroxscaffold_6G00423430 Rroxscaffold_6G00423930 |
| rosa_rugosa | Rorug03G0010900 Rorug03G0011000 |
| rosa_samantha | Rh3AG069800 Rh3BG072400 Rh3CG070600 Rh3DG073100 |
| rosa_wichuraiana | Rw3G005670 Rw3G006020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 60, 686, 967 |
| AclWI | GGATC | 4 cut(s) | 660, 802, 990, 1056 |
| AcsI | RAATTY | 1 cut(s) | 290 |
| AfaI | GTAC | 2 cut(s) | 83, 612 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 132, 791, 881, 1198 |
| AgsI | TTSAA | 8 cut(s) | 35, 116, 202, 282, 287, 738, 864, 983 |
| AjiI | CACGTC | 1 cut(s) | 858 |
| AjnI | CCWGG | 3 cut(s) | 880, 921, 1212 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 339, 371 |
| AleI | CACNNNNGTG | 1 cut(s) | 1215 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 404, 436 |
| AluBI | AGCT | 9 cut(s) | 154, 384, 482, 575, 842, 849, 917, 1109, 1254 |
| AluI | AGCT | 9 cut(s) | 154, 384, 482, 575, 842, 849, 917, 1109, 1254 |
| Alw21I | GWGCWC | 1 cut(s) | 678 |
| Alw26I | GTCTC | 2 cut(s) | 100, 1182 |
| AlwI | GGATC | 4 cut(s) | 660, 802, 990, 1056 |
| Ama87I | CYCGRG | 1 cut(s) | 894 |
| AoxI | GGCC | 5 cut(s) | 147, 527, 767, 897, 1028 |
| ApaI | GGGCCC | 1 cut(s) | 901 |
| ApeKI | GCWGC | 4 cut(s) | 154, 846, 885, 1202 |
| ApoI | RAATTY | 1 cut(s) | 290 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1253 |
| AspLEI | GCGC | 1 cut(s) | 725 |
| AspS9I | GGNCC | 7 cut(s) | 147, 309, 527, 897, 898, 1028, 1272 |
| AsuC2I | CCSGG | 2 cut(s) | 895, 896 |
| AsuHPI | GGTGA | 3 cut(s) | 527, 948, 1202 |
| AvaI | CYCGRG | 1 cut(s) | 894 |
| AvaII | GGWCC | 2 cut(s) | 309, 1272 |
| BaeGI | GKGCMC | 1 cut(s) | 901 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 468, 501, 594, 627 |
| BanII | GRGCYC | 3 cut(s) | 9, 901, 991 |
| BbsI | GAAGAC | 2 cut(s) | 42, 852 |
| Bbv12I | GWGCWC | 1 cut(s) | 678 |
| BbvI | GCAGC | 4 cut(s) | 141, 858, 897, 1189 |
| BccI | CCATC | 4 cut(s) | 38, 470, 597, 751 |
| BciT130I | CCWGG | 3 cut(s) | 882, 923, 1214 |
| BciVI | GTATCC | 1 cut(s) | 266 |
| BcnI | CCSGG | 2 cut(s) | 895, 896 |
| BcoDI | GTCTC | 2 cut(s) | 100, 1182 |
| BfaI | CTAG | 6 cut(s) | 179, 615, 765, 831, 837, 948 |
| BfoI | RGCGCY | 1 cut(s) | 726 |
| BfuI | GTATCC | 1 cut(s) | 266 |
| BglII | AGATCT | 3 cut(s) | 140, 322, 758 |
| BisI | GCNGC | 4 cut(s) | 155, 847, 886, 1203 |
| BlpI | GCTNAGC | 3 cut(s) | 385, 471, 726 |
| BlsI | GCNGC | 4 cut(s) | 156, 848, 887, 1204 |
| Bme1390I | CCNGG | 5 cut(s) | 882, 895, 896, 923, 1214 |
| Bme18I | GGWCC | 2 cut(s) | 309, 1272 |
| BmeT110I | CYCGRG | 1 cut(s) | 894 |
| BmgBI | CACGTC | 1 cut(s) | 858 |
| BmgT120I | GGNCC | 7 cut(s) | 147, 309, 527, 897, 898, 1028, 1272 |
| BmiI | GGNNCC | 4 cut(s) | 311, 899, 988, 1273 |
| BmrFI | CCNGG | 5 cut(s) | 882, 895, 896, 923, 1214 |
| BmsI | GCATC | 1 cut(s) | 175 |
| BpiI | GAAGAC | 2 cut(s) | 42, 852 |
| BpmI | CTGGAG | 2 cut(s) | 538, 905 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 385, 471, 726 |
| BpuEI | CTTGAG | 1 cut(s) | 1005 |
| BpuMI | CCSGG | 2 cut(s) | 895, 896 |
| BsaBI | GATNNNNATC | 2 cut(s) | 321, 793 |
| BsaI | GGTCTC | 1 cut(s) | 1182 |
| BsaJI | CCNNGG | 4 cut(s) | 648, 894, 1192, 1213 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 78, 108 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 132, 791, 881, 1198 |
| Bse1I | ACTGG | 4 cut(s) | 311, 371, 555, 1031 |
| Bse3DI | GCAATG | 4 cut(s) | 164, 222, 227, 895 |
| Bse8I | GATNNNNATC | 2 cut(s) | 321, 793 |
| BseBI | CCWGG | 3 cut(s) | 882, 923, 1214 |
| BseDI | CCNNGG | 4 cut(s) | 648, 894, 1192, 1213 |
| BseGI | GGATG | 3 cut(s) | 307, 499, 542 |
| BseJI | GATNNNNATC | 2 cut(s) | 321, 793 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 132, 791, 881, 1198 |
| BseMI | GCAATG | 4 cut(s) | 164, 222, 227, 895 |
| BseMII | CTCAG | 3 cut(s) | 462, 717, 1248 |
| BseNI | ACTGG | 4 cut(s) | 311, 371, 555, 1031 |
| BseSI | GKGCMC | 1 cut(s) | 901 |
| BseXI | GCAGC | 4 cut(s) | 141, 858, 897, 1189 |
| BshFI | GGCC | 5 cut(s) | 149, 529, 769, 899, 1030 |
| BsiHKAI | GWGCWC | 1 cut(s) | 678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 894 |
| BsiSI | CCGG | 2 cut(s) | 895, 1258 |
| BsiWI | CGTACG | 1 cut(s) | 81 |
| BslFI | GGGAC | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 132, 791, 881, 1198 |
| BsmAI | GTCTC | 2 cut(s) | 100, 1182 |
| BsmFI | GGGAC | 1 cut(s) | 149 |
| BsnI | GGCC | 5 cut(s) | 149, 529, 769, 899, 1030 |
| Bso31I | GGTCTC | 1 cut(s) | 1182 |
| BsoBI | CYCGRG | 1 cut(s) | 894 |
| Bsp120I | GGGCCC | 1 cut(s) | 897 |
| Bsp1286I | GDGCHC | 4 cut(s) | 9, 678, 901, 991 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 385, 471, 726 |
| Bsp19I | CCATGG | 1 cut(s) | 648 |
| BspACI | CCGC | 3 cut(s) | 60, 686, 967 |
| BspANI | GGCC | 5 cut(s) | 149, 529, 769, 899, 1030 |
| BspCNI | CTCAG | 3 cut(s) | 463, 718, 1247 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspLI | GGNNCC | 4 cut(s) | 311, 899, 988, 1273 |
| BspPI | GGATC | 4 cut(s) | 660, 802, 990, 1056 |
| BspTNI | GGTCTC | 1 cut(s) | 1182 |
| BsrDI | GCAATG | 4 cut(s) | 164, 222, 227, 895 |
| BsrI | ACTGG | 4 cut(s) | 311, 371, 555, 1031 |
| BssECI | CCNNGG | 4 cut(s) | 648, 894, 1192, 1213 |
| BssT1I | CCWWGG | 2 cut(s) | 648, 1192 |
| Bst2UI | CCWGG | 3 cut(s) | 882, 923, 1214 |
| Bst4CI | ACNGT | 3 cut(s) | 278, 668, 827 |
| Bst6I | CTCTTC | 1 cut(s) | 15 |
| BstC8I | GCNNGC | 1 cut(s) | 844 |
| BstDEI | CTNAG | 4 cut(s) | 385, 471, 726, 1234 |
| BstDSI | CCRYGG | 1 cut(s) | 648 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 879 |
| BstF5I | GGATG | 3 cut(s) | 307, 499, 542 |
| BstH2I | RGCGCY | 1 cut(s) | 726 |
| BstHHI | GCGC | 1 cut(s) | 725 |
| BstMAI | GTCTC | 2 cut(s) | 100, 1182 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 108, 163, 467, 644, 923 |
| BstNI | CCWGG | 3 cut(s) | 882, 923, 1214 |
| BstNSI | RCATGY | 1 cut(s) | 461 |
| BstSCI | CCNGG | 5 cut(s) | 880, 893, 894, 921, 1212 |
| BstSLI | GKGCMC | 1 cut(s) | 901 |
| BstV1I | GCAGC | 4 cut(s) | 141, 858, 897, 1189 |
| BstV2I | GAAGAC | 2 cut(s) | 42, 852 |
| BstX2I | RGATCY | 6 cut(s) | 140, 322, 652, 758, 794, 995 |
| BstYI | RGATCY | 6 cut(s) | 140, 322, 652, 758, 794, 995 |
| BsuI | GTATCC | 1 cut(s) | 266 |
| BsuRI | GGCC | 5 cut(s) | 149, 529, 769, 899, 1030 |
| BtgI | CCRYGG | 1 cut(s) | 648 |
| BtgZI | GCGATG | 3 cut(s) | 30, 57, 1253 |
| BtrI | CACGTC | 1 cut(s) | 858 |
| BtsCI | GGATG | 3 cut(s) | 307, 499, 542 |
| BtsI | GCAGTG | 1 cut(s) | 1228 |
| BtsIMutI | CAGTG | 4 cut(s) | 364, 562, 1038, 1228 |
| Cac8I | GCNNGC | 1 cut(s) | 844 |
| CciI | TCATGA | 1 cut(s) | 439 |
| CfoI | GCGC | 1 cut(s) | 725 |
| Cfr13I | GGNCC | 7 cut(s) | 147, 309, 527, 897, 898, 1028, 1272 |
| Cfr9I | CCCGGG | 1 cut(s) | 894 |
| Csp6I | GTAC | 2 cut(s) | 82, 611 |
| CviAII | CATG | 8 cut(s) | 314, 440, 458, 649, 964, 1136, 1140, 1268 |
| CviQI | GTAC | 2 cut(s) | 82, 611 |
| DdeI | CTNAG | 4 cut(s) | 385, 471, 726, 1234 |
| Eam1104I | CTCTTC | 1 cut(s) | 15 |
| EarI | CTCTTC | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 2 cut(s) | 648, 1192 |
| Eco24I | GRGCYC | 3 cut(s) | 9, 901, 991 |
| Eco31I | GGTCTC | 1 cut(s) | 1182 |
| Eco47I | GGWCC | 2 cut(s) | 309, 1272 |
| Eco88I | CYCGRG | 1 cut(s) | 894 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 879 |
| EcoRII | CCWGG | 3 cut(s) | 880, 921, 1212 |
| EcoT14I | CCWWGG | 2 cut(s) | 648, 1192 |
| EcoT22I | ATGCAT | 1 cut(s) | 1141 |
| EcoT38I | GRGCYC | 3 cut(s) | 9, 901, 991 |
| ErhI | CCWWGG | 2 cut(s) | 648, 1192 |
| FaeI | CATG | 8 cut(s) | 317, 443, 461, 652, 967, 1139, 1143, 1271 |
| FaqI | GGGAC | 1 cut(s) | 149 |
| FatI | CATG | 8 cut(s) | 313, 439, 457, 648, 963, 1135, 1139, 1267 |
| FauI | CCCGC | 1 cut(s) | 693 |
| Fnu4HI | GCNGC | 4 cut(s) | 155, 847, 886, 1203 |
| FokI | GGATG | 3 cut(s) | 314, 486, 529 |
| FriOI | GRGCYC | 3 cut(s) | 9, 901, 991 |
| Fsp4HI | GCNGC | 4 cut(s) | 155, 847, 886, 1203 |
| FspBI | CTAG | 6 cut(s) | 179, 615, 765, 831, 837, 948 |
| GlaI | GCGC | 1 cut(s) | 724 |
| GluI | GCNGC | 4 cut(s) | 155, 847, 886, 1203 |
| GsuI | CTGGAG | 2 cut(s) | 538, 905 |
| HaeII | RGCGCY | 1 cut(s) | 726 |
| HaeIII | GGCC | 5 cut(s) | 149, 529, 769, 899, 1030 |
| HapII | CCGG | 2 cut(s) | 895, 1258 |
| HhaI | GCGC | 1 cut(s) | 725 |
| Hin1II | CATG | 8 cut(s) | 317, 443, 461, 652, 967, 1139, 1143, 1271 |
| Hin6I | GCGC | 1 cut(s) | 723 |
| HinP1I | GCGC | 1 cut(s) | 723 |
| HincII | GTYRAC | 1 cut(s) | 1183 |
| HindII | GTYRAC | 1 cut(s) | 1183 |
| HindIII | AAGCTT | 1 cut(s) | 573 |
| HinfI | GANTC | 4 cut(s) | 868, 909, 1174, 1232 |
| HpaII | CCGG | 2 cut(s) | 895, 1258 |
| HphI | GGTGA | 3 cut(s) | 527, 948, 1202 |
| Hpy166II | GTNNAC | 3 cut(s) | 364, 1183, 1210 |
| Hpy188I | TCNGA | 8 cut(s) | 11, 237, 346, 571, 778, 1048, 1231, 1276 |
| Hpy188III | TCNNGA | 7 cut(s) | 179, 244, 287, 440, 792, 1103, 1168 |
| Hpy8I | GTNNAC | 3 cut(s) | 364, 1183, 1210 |
| Hpy99I | CGWCG | 2 cut(s) | 32, 125 |
| HpyAV | CCTTC | 5 cut(s) | 208, 407, 408, 1170, 1296 |
| HpyCH4III | ACNGT | 3 cut(s) | 278, 668, 827 |
| HpyCH4IV | ACGT | 1 cut(s) | 857 |
| HpyCH4V | TGCA | 5 cut(s) | 157, 186, 220, 805, 1139 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 108, 163, 467, 644, 923 |
| HpyF3I | CTNAG | 4 cut(s) | 385, 471, 726, 1234 |
| HpySE526I | ACGT | 1 cut(s) | 857 |
| Hsp92II | CATG | 8 cut(s) | 317, 443, 461, 652, 967, 1139, 1143, 1271 |
| HspAI | GCGC | 1 cut(s) | 723 |
| LmnI | GCTCC | 2 cut(s) | 673, 986 |
| Lsp1109I | GCAGC | 4 cut(s) | 141, 858, 897, 1189 |
| LweI | GCATC | 1 cut(s) | 175 |
| MaeI | CTAG | 6 cut(s) | 179, 615, 765, 831, 837, 948 |
| MaeII | ACGT | 1 cut(s) | 857 |
| MaeIII | GTNAC | 5 cut(s) | 338, 748, 821, 853, 902 |
| MboII | GAAGA | 7 cut(s) | 32, 47, 250, 332, 647, 852, 1005 |
| MflI | RGATCY | 6 cut(s) | 140, 322, 652, 758, 794, 995 |
| MhlI | GDGCHC | 4 cut(s) | 9, 678, 901, 991 |
| MluCI | AATT | 9 cut(s) | 170, 229, 282, 290, 531, 738, 952, 978, 1096 |
| MlyI | GAGTC | 2 cut(s) | 918, 1226 |
| MmeI | TCCRAC | 2 cut(s) | 215, 603 |
| Mph1103I | ATGCAT | 1 cut(s) | 1141 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1253 |
| MseI | TTAA | 1 cut(s) | 585 |
| MslI | CAYNNNNRTG | 3 cut(s) | 597, 717, 1215 |
| MspA1I | CMGCKG | 1 cut(s) | 482 |
| MspI | CCGG | 2 cut(s) | 895, 1258 |
| MspR9I | CCNGG | 5 cut(s) | 882, 895, 896, 923, 1214 |
| MvaI | CCWGG | 3 cut(s) | 882, 923, 1214 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 108, 163, 467, 644, 923 |
| NciI | CCSGG | 2 cut(s) | 895, 896 |
| NcoI | CCATGG | 1 cut(s) | 648 |
| NlaIII | CATG | 8 cut(s) | 317, 443, 461, 652, 967, 1139, 1143, 1271 |
| NlaIV | GGNNCC | 4 cut(s) | 311, 899, 988, 1273 |
| NmeAIII | GCCGAG | 1 cut(s) | 795 |
| NmuCI | GTSAC | 3 cut(s) | 821, 853, 902 |
| NsiI | ATGCAT | 1 cut(s) | 1141 |
| NspI | RCATGY | 1 cut(s) | 461 |
| OliI | CACNNNNGTG | 1 cut(s) | 1215 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1253 |
| PfeI | GAWTC | 2 cut(s) | 868, 1174 |
| Pfl23II | CGTACG | 1 cut(s) | 81 |
| PflFI | GACNNNGTC | 1 cut(s) | 908 |
| PkrI | GCNGC | 4 cut(s) | 156, 848, 887, 1204 |
| PleI | GAGTC | 2 cut(s) | 917, 1226 |
| PpsI | GAGTC | 2 cut(s) | 917, 1226 |
| Psp6I | CCWGG | 3 cut(s) | 880, 921, 1212 |
| PspGI | CCWGG | 3 cut(s) | 880, 921, 1212 |
| PspLI | CGTACG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 4 cut(s) | 311, 899, 988, 1273 |
| PspOMI | GGGCCC | 1 cut(s) | 897 |
| PspPI | GGNCC | 7 cut(s) | 147, 309, 527, 897, 898, 1028, 1272 |
| PsuI | RGATCY | 6 cut(s) | 140, 322, 652, 758, 794, 995 |
| PsyI | GACNNNGTC | 1 cut(s) | 908 |
| PvuII | CAGCTG | 1 cut(s) | 482 |
| RsaI | GTAC | 2 cut(s) | 83, 612 |
| RsaNI | GTAC | 2 cut(s) | 82, 611 |
| RseI | CAYNNNNRTG | 3 cut(s) | 597, 717, 1215 |
| SaqAI | TTAA | 1 cut(s) | 585 |
| SatI | GCNGC | 4 cut(s) | 155, 847, 886, 1203 |
| Sau96I | GGNCC | 7 cut(s) | 147, 309, 527, 897, 898, 1028, 1272 |
| SchI | GAGTC | 2 cut(s) | 918, 1226 |
| ScrFI | CCNGG | 5 cut(s) | 882, 895, 896, 923, 1214 |
| SduI | GDGCHC | 4 cut(s) | 9, 678, 901, 991 |
| SfaNI | GCATC | 1 cut(s) | 175 |
| SinI | GGWCC | 2 cut(s) | 309, 1272 |
| SmaI | CCCGGG | 1 cut(s) | 896 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 597, 717, 1215 |
| SmlI | CTYRAG | 1 cut(s) | 1020 |
| SmoI | CTYRAG | 1 cut(s) | 1020 |
| SrfI | GCCCGGGC | 1 cut(s) | 896 |
| Sse9I | AATT | 9 cut(s) | 170, 229, 282, 290, 531, 738, 952, 978, 1096 |
| SsiI | CCGC | 3 cut(s) | 60, 686, 967 |
| SspMI | CTAG | 6 cut(s) | 179, 615, 765, 831, 837, 948 |
| StyD4I | CCNGG | 5 cut(s) | 880, 893, 894, 921, 1212 |
| StyI | CCWWGG | 2 cut(s) | 648, 1192 |
| TaaI | ACNGT | 3 cut(s) | 278, 668, 827 |
| TaiI | ACGT | 1 cut(s) | 860 |
| TaqI | TCGA | 3 cut(s) | 104, 243, 1169 |
| TaqII | GACCGA | 2 cut(s) | 1200, 1287 |
| TasI | AATT | 9 cut(s) | 170, 229, 282, 290, 531, 738, 952, 978, 1096 |
| TfiI | GAWTC | 2 cut(s) | 868, 1174 |
| Tru1I | TTAA | 1 cut(s) | 585 |
| Tru9I | TTAA | 1 cut(s) | 585 |
| TscAI | CASTG | 4 cut(s) | 371, 562, 1038, 1228 |
| TseFI | GTSAC | 3 cut(s) | 821, 853, 902 |
| TseI | GCWGC | 4 cut(s) | 154, 846, 885, 1202 |
| Tsp45I | GTSAC | 3 cut(s) | 821, 853, 902 |
| TspGWI | ACGGA | 1 cut(s) | 99 |
| TspMI | CCCGGG | 1 cut(s) | 894 |
| TspRI | CASTG | 4 cut(s) | 371, 562, 1038, 1228 |
| Tth111I | GACNNNGTC | 1 cut(s) | 908 |
| VpaK11BI | GGWCC | 2 cut(s) | 309, 1272 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 879 |
| XapI | RAATTY | 1 cut(s) | 290 |
| XbaI | TCTAGA | 1 cut(s) | 178 |
| XceI | RCATGY | 1 cut(s) | 461 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 596, 1220 |
| XmaI | CCCGGG | 1 cut(s) | 894 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1253 |
| XspI | CTAG | 6 cut(s) | 179, 615, 765, 831, 837, 948 |
| Zsp2I | ATGCAT | 1 cut(s) | 1141 |