Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000046.1

Orthogroup ID

OG0005970

Physical Location & Seq

Genomic Coordinates Forward (+)

75656 .. 76093

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000046.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgattcctccttatccaggcagcaatgctcgggctcgcgacagagtccaagctcttcaggcatactaccaacagcaacaacctagcaattcaccaaccatgcgcacacccatgatttcaggagcccgaagatcaagcagtcaaagaggtttgcctcaagtagggccagtggcttcatcatcagatcaaaatggtggtttctatttttacccttctggttcatcaggccgtaactaccaagaagctgaaaatcctttatctactcgttttcatgcgtgggaaagagatcacctgccttcattctcgatgaatcaggttgaccgtgatcctggttgggctgctcttcaccagggtggtagtggatcagagtcggcaatcaggggaaacagcttacggcggcatgcatctgagaggacatcttcacaaaatcggtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

145

Amino Acids

16.0

Weight (kDa)

10.49

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05545
fragaria_vesca	FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620 FvH4_6g06620
malus_domestica	MD04G1199600.v1.1 MD08G1111000.v1.1 MD12G1212400.v1.1
prunus_persica	Prupe.6G320100_v2.0.a1 Prupe.6G320100_v2.0.a1
pyrus_communis	pycom04g17630 pycom12g19860
rosa_chinensis	RchiOBHm_Chr3g0455821
rosa_laevigata	RLG00000025329
rosa_multiflora	Rmu_ssc0000046.1_g000008 Rmu_ssc0000046.1_g000018
rosa_roxburghii	Rroxscaffold_6G00423430 Rroxscaffold_6G00423930
rosa_rugosa	Rorug03G0010900 Rorug03G0011000
rosa_samantha	Rh3AG069800 Rh3BG072400 Rh3CG070600 Rh3DG073100
rosa_wichuraiana	Rw3G005670 Rw3G006020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	300
Acc16I	TGCGCA	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	300
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	2 cut(s)	320, 370
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	17, 161
AjnI	CCWGG	3 cut(s)	16, 328, 348
AleI	CACNNNNGTG	1 cut(s)	351
AluBI	AGCT	3 cut(s)	53, 245, 390
AluI	AGCT	3 cut(s)	53, 245, 390
AlwI	GGATC	2 cut(s)	320, 370
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	2 cut(s)	164, 226
ApeKI	GCWGC	2 cut(s)	21, 338
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	84, 281, 338
AvaI	CYCGRG	1 cut(s)	30
BanII	GRGCYC	2 cut(s)	37, 127
BbvI	GCAGC	2 cut(s)	33, 325
BceAI	ACGGC	2 cut(s)	213, 410
BciT130I	CCWGG	3 cut(s)	18, 330, 350
BfaI	CTAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	22, 339, 398
BlsI	GCNGC	3 cut(s)	23, 340, 399
Bme1390I	CCNGG	3 cut(s)	18, 330, 350
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	3 cut(s)	18, 330, 350
BmsI	GCATC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 161
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	3 cut(s)	18, 330, 350
BseDI	CCNNGG	1 cut(s)	349
BseLI	CCNNNNNNNGG	2 cut(s)	17, 161
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	33, 325
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	166, 228
BsiHKCI	CYCGRG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	17, 161
BsnI	GGCC	2 cut(s)	166, 228
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	37, 127
Bsp143I	GATC	5 cut(s)	131, 184, 286, 325, 362
Bsp68I	TCGCGA	1 cut(s)	39
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	166, 228
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	320, 370
BspQI	GCTCTTC	2 cut(s)	60, 348
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	5 cut(s)	131, 184, 286, 325, 362
Bst2UI	CCWGG	3 cut(s)	18, 330, 350
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	60, 348
BstC8I	GCNNGC	2 cut(s)	37, 402
BstDEI	CTNAG	1 cut(s)	408
BstENI	CCTNNNNNAGG	2 cut(s)	15, 159
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	5 cut(s)	134, 187, 289, 328, 365
BstMBI	GATC	5 cut(s)	131, 184, 286, 325, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	3 cut(s)	18, 330, 350
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	3 cut(s)	16, 328, 348
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	33, 325
BsuRI	GGCC	2 cut(s)	166, 228
BtsIMutI	CAGTG	1 cut(s)	174
BtuMI	TCGCGA	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	37, 402
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	164
CviAII	CATG	4 cut(s)	100, 112, 272, 401
CviJI	RGCY	9 cut(s)	35, 53, 125, 166, 173, 228, 245, 338, 390
CviKI_1	RGCY	9 cut(s)	35, 53, 125, 166, 173, 228, 245, 338, 390
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	5 cut(s)	133, 186, 288, 327, 364
DpnII	GATC	5 cut(s)	131, 184, 286, 325, 362
Eam1104I	CTCTTC	2 cut(s)	60, 348
EarI	CTCTTC	2 cut(s)	60, 348
Eco24I	GRGCYC	2 cut(s)	37, 127
Eco57I	CTGAAG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	30
EcoNI	CCTNNNNNAGG	2 cut(s)	15, 159
EcoRII	CCWGG	3 cut(s)	16, 328, 348
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	37, 127
FaeI	CATG	4 cut(s)	103, 115, 275, 404
FaiI	YATR	6 cut(s)	64, 101, 113, 273, 402, 436
FatI	CATG	4 cut(s)	99, 111, 271, 400
Fnu4HI	GCNGC	3 cut(s)	22, 339, 398
FriOI	GRGCYC	2 cut(s)	37, 127
Fsp4HI	GCNGC	3 cut(s)	22, 339, 398
FspAI	RTGCGCAY	1 cut(s)	104
FspBI	CTAG	1 cut(s)	84
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	22, 339, 398
HaeIII	GGCC	2 cut(s)	166, 228
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	103, 115, 275, 404
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	4 cut(s)	4, 45, 310, 368
HphI	GGTGA	3 cut(s)	84, 281, 338
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	184, 367, 409
Hpy188III	TCNNGA	3 cut(s)	38, 120, 304
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	222, 306
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	103, 115, 275, 404
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	131, 184, 286, 325, 362
LguI	GCTCTTC	2 cut(s)	60, 348
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	2 cut(s)	33, 325
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	5 cut(s)	133, 186, 288, 327, 364
MboI	GATC	5 cut(s)	131, 184, 286, 325, 362
MboII	GAAGA	4 cut(s)	47, 141, 335, 411
MhlI	GDGCHC	2 cut(s)	37, 127
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	2 cut(s)	54, 377
MnlI	CCTC	4 cut(s)	18, 140, 165, 405
Mph1103I	ATGCAT	1 cut(s)	406
MslI	CAYNNNNRTG	2 cut(s)	110, 351
MspR9I	CCNGG	3 cut(s)	18, 330, 350
MvaI	CCWGG	3 cut(s)	18, 330, 350
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	5 cut(s)	131, 184, 286, 325, 362
NlaIII	CATG	4 cut(s)	103, 115, 275, 404
NlaIV	GGNNCC	1 cut(s)	124
NruI	TCGCGA	1 cut(s)	39
NsbI	TGCGCA	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	351
PaeI	GCATGC	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	300
PciSI	GCTCTTC	2 cut(s)	60, 348
PfeI	GAWTC	2 cut(s)	4, 310
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	23, 340, 399
PleI	GAGTC	2 cut(s)	53, 376
PpsI	GAGTC	2 cut(s)	53, 376
Psp6I	CCWGG	3 cut(s)	16, 328, 348
PspGI	CCWGG	3 cut(s)	16, 328, 348
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	44
RruI	TCGCGA	1 cut(s)	39
RseI	CAYNNNNRTG	2 cut(s)	110, 351
SapI	GCTCTTC	2 cut(s)	60, 348
SatI	GCNGC	3 cut(s)	22, 339, 398
Sau3AI	GATC	5 cut(s)	131, 184, 286, 325, 362
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	54, 377
ScrFI	CCNGG	3 cut(s)	18, 330, 350
SduI	GDGCHC	2 cut(s)	37, 127
SetI	ASST	7 cut(s)	55, 85, 151, 247, 294, 318, 392
SfaNI	GCATC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	110, 351
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	16, 328, 348
TaaI	ACNGT	1 cut(s)	323
TaqI	TCGA	1 cut(s)	305
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	88
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	4, 310
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	2 cut(s)	21, 338
TspDTI	ATGAA	5 cut(s)	165, 210, 260, 288, 323
TspRI	CASTG	1 cut(s)	174
Tth111I	GACNNNGTC	1 cut(s)	44
XagI	CCTNNNNNAGG	2 cut(s)	15, 159
XceI	RCATGY	1 cut(s)	404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.