FvH4_6g10371

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006413
Physical Location & Seq
Forward (+)
6190412 .. 6191687
1276 bp
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UTR
Exon/CDS
Intron
FvH4_6g10371.t1

Sequence Viewer

Length: 606 bp
ATGTCCTTTGCTGTGCCGGTGCCTGCGACTGGGCCGAGCCCGCAGTTCCAAGCAACCTACCCTGTGGATCTGGTCATCACGGAGAAGATGATGTCGATCAAGGAAGGTGCTTTCACGGTGTCAGACGTTAATGGAAATCTCATCTTCCAGATCAAAGGCTCCCTTTTCAGCCTTCATGATCGTCGCACTTTGGTCGACACCGCCGGCACTCCTATCCTCTCCTTCCGACAAAAGATATTAACAGCACATAAGAGATGGCACGTATTTAGAGGAGAGAGTTCAGACGAAAAAGATCTACTCTTCACTGCCAGGAAGTCTACCTTTTTCCAGCTCAAGAGTGAACTAGATGTGTTCTTGGCTGGTAACACTAAAGAAGAAGCTTATGATTTCAAGGTCAAAGGAAGCTGGGGGGACAGAGCTTGCACCATATATAATGCAGACAACACTATCATTGCACAAATGCACAAGAAACATGATGTTAAAAGTGCTTTGTTCGGGAGAGATTCGTTTGCAGTGACTGTGTATCCTCATGTCGATTACGCCTTTATAACTGCCGTCGTGGTTGTTCTTCATGAGATTAACATTGACAGAAGTGGGGAGGACTGA

Protein Analysis

202

Amino Acids

22.54

Weight (kDa)

6.65

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 22 - 190 1.8e-51 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 2 cut(s) 195, 317
AciI CCGC 2 cut(s) 41, 201
AclWI GGATC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 4 cut(s) 331, 380, 405, 419
AluI AGCT 4 cut(s) 331, 380, 405, 419
AlwI GGATC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 41
BccI CCATC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 539
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 1 cut(s) 310
BciVI GTATCC 1 cut(s) 534
BfaI CTAG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 534
BglII AGATCT 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 21, 160
BmrFI CCNGG 1 cut(s) 310
BmrI ACTGGG 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse118I RCCGGY 2 cut(s) 16, 203
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 450
Bse8I GATNNNNATC 1 cut(s) 95
BseBI CCWGG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 405
BshFI GGCC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 19
BsiSI CCGG 2 cut(s) 17, 204
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 5 cut(s) 67, 96, 150, 178, 292
BspACI CCGC 2 cut(s) 41, 201
BspANI GGCC 1 cut(s) 34
BspHI TCATGA 2 cut(s) 175, 571
BspLI GGNNCC 2 cut(s) 21, 160
BspPI GGATC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 2 cut(s) 16, 203
BsrI ACTGG 1 cut(s) 34
BssAI RCCGGY 2 cut(s) 16, 203
BssMI GATC 5 cut(s) 67, 96, 150, 178, 292
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 118, 520
Bst6I CTCTTC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 262
BstC8I GCNNGC 4 cut(s) 24, 41, 205, 421
BstKTI GATC 5 cut(s) 70, 99, 153, 181, 295
BstMBI GATC 5 cut(s) 67, 96, 150, 178, 292
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstX2I RGATCY 2 cut(s) 67, 292
BstYI RGATCY 2 cut(s) 67, 292
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 1 cut(s) 34
BtsI GCAGTG 2 cut(s) 303, 519
BtsIMutI CAGTG 2 cut(s) 303, 519
Cac8I GCNNGC 4 cut(s) 24, 41, 205, 421
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 2 cut(s) 175, 571
Cfr10I RCCGGY 2 cut(s) 16, 203
Cfr13I GGNCC 1 cut(s) 32
CviAII CATG 4 cut(s) 176, 473, 530, 572
CviJI RGCY 9 cut(s) 34, 39, 159, 171, 331, 359, 380, 405, 419
CviKI_1 RGCY 9 cut(s) 34, 39, 159, 171, 331, 359, 380, 405, 419
DpnI GATC 5 cut(s) 69, 98, 152, 180, 294
DpnII GATC 5 cut(s) 67, 96, 150, 178, 292
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 4 cut(s) 179, 476, 533, 575
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 305, 337
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 175, 472, 529, 571
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 2 cut(s) 195, 317
FriOI GRGCYC 1 cut(s) 41
FspBI CTAG 1 cut(s) 344
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 1 cut(s) 34
HapII CCGG 2 cut(s) 17, 204
Hin1II CATG 4 cut(s) 179, 476, 533, 575
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 1 cut(s) 503
HpaII CCGG 2 cut(s) 17, 204
Hpy166II GTNNAC 3 cut(s) 196, 318, 341
Hpy188I TCNGA 3 cut(s) 124, 227, 283
Hpy188III TCNNGA 5 cut(s) 148, 176, 334, 496, 572
Hpy8I GTNNAC 3 cut(s) 196, 318, 341
Hpy99I CGWCG 2 cut(s) 186, 560
HpyAV CCTTC 3 cut(s) 98, 182, 232
HpyCH4III ACNGT 2 cut(s) 118, 520
HpyCH4IV ACGT 2 cut(s) 126, 261
HpyCH4V TGCA 5 cut(s) 423, 437, 455, 463, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpySE526I ACGT 2 cut(s) 126, 261
Hsp92II CATG 4 cut(s) 179, 476, 533, 575
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 5 cut(s) 67, 96, 150, 178, 292
LmnI GCTCC 1 cut(s) 164
MaeI CTAG 1 cut(s) 344
MaeII ACGT 2 cut(s) 126, 261
MaeIII GTNAC 2 cut(s) 362, 514
MalI GATC 5 cut(s) 69, 98, 152, 180, 294
MboI GATC 5 cut(s) 67, 96, 150, 178, 292
MboII GAAGA 5 cut(s) 97, 136, 292, 386, 560
MflI RGATCY 2 cut(s) 67, 292
MhlI GDGCHC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 4 cut(s) 227, 263, 537, 592
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 4 cut(s) 129, 239, 480, 579
MspI CCGG 2 cut(s) 17, 204
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 40
NaeI GCCGGC 1 cut(s) 205
NdeII GATC 5 cut(s) 67, 96, 150, 178, 292
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 4 cut(s) 179, 476, 533, 575
NlaIV GGNNCC 2 cut(s) 21, 160
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 514
PagI TCATGA 2 cut(s) 175, 571
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 262
PsiI TTATAA 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 308
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 21, 160
PspPI GGNCC 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 2 cut(s) 67, 292
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 4 cut(s) 129, 239, 480, 579
Sau3AI GATC 5 cut(s) 67, 96, 150, 178, 292
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SsiI CCGC 2 cut(s) 41, 201
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 118, 520
TaiI ACGT 2 cut(s) 129, 264
TaqI TCGA 3 cut(s) 95, 195, 534
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 4 cut(s) 129, 239, 480, 579
Tru9I TTAA 4 cut(s) 129, 239, 480, 579
TscAI CASTG 2 cut(s) 310, 519
TseFI GTSAC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 2 cut(s) 164, 560
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 310, 519
XmiI GTMKAC 2 cut(s) 195, 317
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.