Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006413

Physical Location & Seq

Genomic Coordinates Forward (+)

26588055 .. 26589441

Gene Structure 1387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G287600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCGTATACGGTGCCGGTGCCTGCAGCTGGTCCGAGCGCTCAGCCACTGGCGAACCCAGTGACCGTGGTCAGCCCACAGTTCCACGCAACGTACCCAGTGGATCTGGTGATCACCGAGAAGATGATGAGCCTCAAGGAAGGTACATTCACAGTCTCCGATGTCAACGGCAATCTCATGTTCAAGATCAAAGGCTCCCTGTTCAGCCTTCACGACCGCCGCGTTTTGGTCGACGGCGCCGACACTCCGATCCTCTCTTTTCGACAAAAGATATTGACAGCGCATAGGAGATGGCACGTATATAGAGGAGAGAGCTCAGAGGCCAAAGATTTACTTTTCACTGCGAAGAAGTCATCGTTTTTCCAGTTAAAGACTGAATTAGATGTGTTCTTGGCTGCTAATACAAAAGAAGAGCAATATGATTTCAAGGTCAAAGGAAGTTGGGGGGAGAGATCATGCACCATATACACTGGAGACAACACCATCATTGCTCAAATGCACAAGAAGCATGATGTTAAAAGTGTTTTGTTTGGAAGAGATGCATTTGGAGTTACTGTGTACCCTCATGTTGATTACGCCTTTATAGTTGCTGTTGTGGTCATTCTTCACGAGATTAATATGGATAGAGGCGGGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

214

Amino Acids

23.84

Weight (kDa)

7.1

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006413)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10370 FvH4_6g10371 FvH4_6g10380
malus_domestica	MD12G1183000.v1.1 MD12G1183400.v1.1
prunus_persica	Prupe.6G287600_v2.0.a1 Prupe.6G287800_v2.0.a1
pyrus_communis	pycom12g17190
rosa_chinensis	RchiOBHm_Chr3g0461221 RchiOBHm_Chr3g0461231
rosa_laevigata	RLG00000024945 RLG00000024946
rosa_multiflora	Rmu_sc0009344.1_g000010 Rmu_ssc0000326.1_g000014
rosa_roxburghii	Rroxscaffold_6G00418780 Rroxscaffold_6G00418800
rosa_rugosa	Rorug03G0049000 Rorug03G0049100
rosa_samantha	Rh3AG106300 Rh3AG106400 Rh3BG110500 Rh3BG110600 Rh3CG112200 Rh3CG112300 Rh3DG112400
rosa_wichuraiana	Rw3G009100 Rw3G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	13, 19, 236
AccI	GTMKAC	2 cut(s)	8, 231
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	217, 220, 630
AclWI	GGATC	2 cut(s)	111, 244
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	3 cut(s)	95, 145, 560
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	29, 226
AgsI	TTSAA	2 cut(s)	184, 427
AluBI	AGCT	2 cut(s)	29, 315
AluI	AGCT	2 cut(s)	29, 315
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	160, 468
AlwI	GGATC	2 cut(s)	111, 244
AlwNI	CAGNNNCTG	1 cut(s)	49
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	26, 395
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	3 cut(s)	41, 239, 283
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	106, 121
AvaII	GGWCC	1 cut(s)	32
BanI	GGYRCC	3 cut(s)	13, 19, 236
BanII	GRGCYC	1 cut(s)	317
BauI	CACGAG	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	38, 382
BccI	CCATC	2 cut(s)	285, 491
BceAI	ACGGC	2 cut(s)	184, 250
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	160, 468
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	2 cut(s)	42, 240
BisI	GCNGC	3 cut(s)	27, 220, 396
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	3 cut(s)	28, 221, 397
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	4 cut(s)	15, 21, 196, 238
BmrI	ACTGGG	2 cut(s)	53, 92
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	2 cut(s)	53, 92
BoxI	GACNNNNGTC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 226
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	5 cut(s)	54, 59, 98, 364, 475
Bse3DI	GCAATG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	29, 226
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	56, 330
BseNI	ACTGG	5 cut(s)	54, 59, 98, 364, 475
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	38, 382
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	3 cut(s)	13, 19, 236
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	29, 226
BsmAI	GTCTC	2 cut(s)	160, 468
BsnI	GGCC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	5 cut(s)	103, 111, 186, 249, 452
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	3 cut(s)	217, 220, 630
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	2 cut(s)	55, 329
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	15, 21, 196, 238
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	111, 244
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	3 cut(s)	13, 19, 236
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	5 cut(s)	54, 59, 98, 364, 475
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	5 cut(s)	103, 111, 186, 249, 452
BssNAI	GTATAC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	608
Bst1107I	GTATAC	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	608
Bst4CI	ACNGT	5 cut(s)	13, 67, 81, 154, 556
Bst6I	CTCTTC	2 cut(s)	405, 529
BstACI	GRCGYC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	42, 316
BstDSI	CCRYGG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	2 cut(s)	42, 240
BstHHI	GCGC	3 cut(s)	41, 239, 283
BstKTI	GATC	5 cut(s)	106, 114, 189, 252, 455
BstMAI	GTCTC	2 cut(s)	160, 468
BstMBI	GATC	5 cut(s)	103, 111, 186, 249, 452
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstPAI	GACNNNNGTC	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	38, 382
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	5 cut(s)	47, 66, 105, 339, 468
Cac8I	GCNNGC	1 cut(s)	24
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	3 cut(s)	41, 239, 283
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	94, 144, 559
CviAII	CATG	4 cut(s)	178, 456, 509, 566
CviJI	RGCY	9 cut(s)	29, 46, 75, 132, 195, 207, 315, 323, 395
CviKI_1	RGCY	9 cut(s)	29, 46, 75, 132, 195, 207, 315, 323, 395
CviQI	GTAC	3 cut(s)	94, 144, 559
DdeI	CTNAG	2 cut(s)	42, 316
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	5 cut(s)	105, 113, 188, 251, 454
DpnII	GATC	5 cut(s)	103, 111, 186, 249, 452
Eam1104I	CTCTTC	2 cut(s)	405, 529
EarI	CTCTTC	2 cut(s)	405, 529
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	32
Eco47III	AGCGCT	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	315
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	317
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
FaeI	CATG	4 cut(s)	181, 459, 512, 569
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FatI	CATG	4 cut(s)	177, 455, 508, 565
FauI	CCCGC	1 cut(s)	623
FbaI	TGATCA	1 cut(s)	111
FblI	GTMKAC	2 cut(s)	8, 231
Fnu4HI	GCNGC	3 cut(s)	27, 220, 396
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	27, 220, 396
GlaI	GCGC	3 cut(s)	40, 238, 282
GluI	GCNGC	3 cut(s)	27, 220, 396
GsuI	CTGGAG	1 cut(s)	492
HaeII	RGCGCY	2 cut(s)	42, 240
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	3 cut(s)	41, 239, 283
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	181, 459, 512, 569
Hin6I	GCGC	3 cut(s)	39, 237, 281
HinP1I	GCGC	3 cut(s)	39, 237, 281
HincII	GTYRAC	2 cut(s)	166, 232
HindII	GTYRAC	2 cut(s)	166, 232
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	2 cut(s)	106, 121
Hpy166II	GTNNAC	4 cut(s)	9, 166, 232, 559
Hpy188I	TCNGA	4 cut(s)	36, 160, 249, 319
Hpy188III	TCNNGA	3 cut(s)	184, 212, 608
Hpy8I	GTNNAC	4 cut(s)	9, 166, 232, 559
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	134, 218
HpyCH4III	ACNGT	5 cut(s)	13, 67, 81, 154, 556
HpyCH4IV	ACGT	2 cut(s)	92, 297
HpyCH4V	TGCA	4 cut(s)	26, 459, 499, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	2 cut(s)	42, 316
HpySE526I	ACGT	2 cut(s)	92, 297
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	181, 459, 512, 569
HspAI	GCGC	3 cut(s)	39, 237, 281
KasI	GGCGCC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	103, 111, 186, 249, 452
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	38, 382
LweI	GCATC	1 cut(s)	529
MaeII	ACGT	2 cut(s)	92, 297
MaeIII	GTNAC	2 cut(s)	61, 550
MalI	GATC	5 cut(s)	105, 113, 188, 251, 454
MboI	GATC	5 cut(s)	103, 111, 186, 249, 452
MboII	GAAGA	5 cut(s)	133, 358, 422, 546, 596
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	1 cut(s)	377
Mly113I	GGCGCC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	143, 263, 299, 313, 573, 620
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	3 cut(s)	368, 516, 615
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	505
NarI	GGCGCC	1 cut(s)	237
NdeII	GATC	5 cut(s)	103, 111, 186, 249, 452
NlaIII	CATG	4 cut(s)	181, 459, 512, 569
NlaIV	GGNNCC	4 cut(s)	15, 21, 196, 238
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	544
PciSI	GCTCTTC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 237
PkrI	GCNGC	3 cut(s)	28, 221, 397
PluTI	GGCGCC	1 cut(s)	240
Ppu21I	YACGTR	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	68
PshBI	ATTAAT	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	317
PspN4I	GGNNCC	4 cut(s)	15, 21, 196, 238
PspPI	GGNCC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	3 cut(s)	95, 145, 560
RsaNI	GTAC	3 cut(s)	94, 144, 559
SacI	GAGCTC	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	368, 516, 615
SatI	GCNGC	3 cut(s)	27, 220, 396
Sau3AI	GATC	5 cut(s)	103, 111, 186, 249, 452
Sau96I	GGNCC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	6 cut(s)	31, 95, 145, 300, 317, 432
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	24
SfoI	GGCGCC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	3 cut(s)	217, 220, 630
SspDI	GGCGCC	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	317
TaaI	ACNGT	5 cut(s)	13, 67, 81, 154, 556
TaiI	ACGT	2 cut(s)	95, 300
TaqI	TCGA	2 cut(s)	231, 262
TasI	AATT	1 cut(s)	377
TauI	GCSGC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	368, 516, 615
Tru9I	TTAA	3 cut(s)	368, 516, 615
TscAI	CASTG	5 cut(s)	54, 66, 105, 346, 475
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	26, 395
Tsp45I	GTSAC	1 cut(s)	61
TspRI	CASTG	5 cut(s)	54, 66, 105, 346, 475
VpaK11BI	GGWCC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	615
XmiI	GTMKAC	2 cut(s)	8, 231
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.