MD12G1183000.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0006413
Physical Location & Seq
Forward (+)
26320825 .. 26322706
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1183000.v1.1.491

Sequence Viewer

Length: 642 bp
ATGTCTTATGCTGTACCGGTGCCGGCGGCAGGGCCGAGCGCACAGCCATTGGCGAACCCAGTGACGGTGGTGAGCCCGCAGTTCCTCGCAGCGTACCCGGTGGACCTGGTGATCACGGAGAAGATGATGACCATCAAGGAGGGTGCGTTTACTGTGTCCGATGTCAACGGCAACCTCATGTTCAACATCAAAGGCTCACTTTTCAGCCTTCACGACCGCCGCGTGTTGGTCGACAACGCCGGTAATCCAATCGTCTCTTTCCGACAAAAGATAATGACGGCACATAGGAGATGGCAAGTATATAGAGGAGAGAGCTCAGACTCCAAAGATCTACTTTTCAGTGGCAAGAAGGCATCTCTTTTGCAGTTCAAGACTGAATTAGATGTGTTCCTGGCCGGTAACACAAAAGAAGACAACTATGATTTCAAGGTCAAAGGAAGTTGGGGGGAGAGATCTTGCACCATATACACTGGAGACAACACCATCATTGCTCAAATGCATAAGAAGCATGACATCAAGAGCCATTTCTTTGGAAGAGATGCATTTGGAGTGACGGTGTACCCTAATGTCGATTACGCCTTCATAGTCGCTGTTGTGGTCATTCTTCATGAGATTAATATGGACAGAAGCGGGCTAGACTGA

Protein Analysis

214

Amino Acids

23.7

Weight (kDa)

7.84

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 34 - 202 6e-52 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 222
AciI CCGC 5 cut(s) 26, 77, 217, 220, 630
AcoI YGGCCR 1 cut(s) 393
AfaI GTAC 3 cut(s) 15, 95, 560
AfiI CCNNNNNNNGG 3 cut(s) 29, 64, 226
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 3 cut(s) 184, 370, 427
AjnI CCWGG 2 cut(s) 105, 390
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 259, 468
AoxI GGCC 2 cut(s) 32, 393
ApeKI GCWGC 1 cut(s) 89
AseI ATTAAT 1 cut(s) 615
AsiGI ACCGGT 1 cut(s) 16
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 32, 103
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 82, 121
AvaII GGWCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 2 cut(s) 77, 317
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 101
BccI CCATC 3 cut(s) 140, 285, 491
BceAI ACGGC 2 cut(s) 184, 294
BciT130I CCWGG 2 cut(s) 107, 392
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 259, 468
BfaI CTAG 1 cut(s) 635
BglII AGATCT 2 cut(s) 328, 452
BisI GCNGC 3 cut(s) 27, 90, 220
BlsI GCNGC 3 cut(s) 28, 91, 221
Bme1390I CCNGG 3 cut(s) 98, 107, 392
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 32, 103
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 3 cut(s) 98, 107, 392
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 2 cut(s) 362, 529
BmuI ACTGGG 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 540, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 64, 226
Bse118I RCCGGY 4 cut(s) 16, 22, 239, 395
Bse1I ACTGG 2 cut(s) 59, 475
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 2 cut(s) 107, 392
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 29, 64, 226
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 59, 475
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 34, 395
BshNI GGYRCC 1 cut(s) 19
BshTI ACCGGT 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 5 cut(s) 17, 23, 98, 240, 396
BslI CCNNNNNNNGG 3 cut(s) 29, 64, 226
BsmAI GTCTC 2 cut(s) 259, 468
BsmBI CGTCTC 1 cut(s) 259
BsnI GGCC 2 cut(s) 34, 395
Bsp1286I GDGCHC 2 cut(s) 77, 317
Bsp143I GATC 3 cut(s) 111, 328, 452
BspACI CCGC 5 cut(s) 26, 77, 217, 220, 630
BspANI GGCC 2 cut(s) 34, 395
BspCNI CTCAG 1 cut(s) 329
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 4 cut(s) 16, 22, 239, 395
BsrI ACTGG 2 cut(s) 59, 475
BssAI RCCGGY 4 cut(s) 16, 22, 239, 395
BssMI GATC 3 cut(s) 111, 328, 452
Bst2UI CCWGG 2 cut(s) 107, 392
Bst4CI ACNGT 3 cut(s) 67, 154, 556
Bst6I CTCTTC 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 24, 77, 632
BstDEI CTNAG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 3 cut(s) 114, 331, 455
BstMAI GTCTC 2 cut(s) 259, 468
BstMBI GATC 3 cut(s) 111, 328, 452
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstNI CCWGG 2 cut(s) 107, 392
BstSCI CCNGG 3 cut(s) 96, 105, 390
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 2 cut(s) 328, 452
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 2 cut(s) 328, 452
BsuRI GGCC 2 cut(s) 34, 395
BtsIMutI CAGTG 3 cut(s) 66, 346, 468
Cac8I GCNNGC 3 cut(s) 24, 77, 632
CciI TCATGA 1 cut(s) 607
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 4 cut(s) 16, 22, 239, 395
Cfr13I GGNCC 2 cut(s) 32, 103
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 3 cut(s) 14, 94, 559
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 3 cut(s) 178, 509, 608
CviJI RGCY 9 cut(s) 34, 46, 75, 195, 207, 315, 395, 522, 634
CviKI_1 RGCY 9 cut(s) 34, 46, 75, 195, 207, 315, 395, 522, 634
CviQI GTAC 3 cut(s) 14, 94, 559
DdeI CTNAG 1 cut(s) 316
DpnI GATC 3 cut(s) 113, 330, 454
DpnII GATC 3 cut(s) 111, 328, 452
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
Ecl136II GAGCTC 1 cut(s) 315
Eco24I GRGCYC 2 cut(s) 77, 317
Eco47I GGWCC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 105, 390
EcoT22I ATGCAT 2 cut(s) 501, 544
EcoT38I GRGCYC 2 cut(s) 77, 317
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 3 cut(s) 181, 512, 611
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 318, 350
FatI CATG 3 cut(s) 177, 508, 607
FauI CCCGC 2 cut(s) 84, 623
FbaI TGATCA 1 cut(s) 111
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 27, 90, 220
FriOI GRGCYC 2 cut(s) 77, 317
Fsp4HI GCNGC 3 cut(s) 27, 90, 220
FspBI CTAG 1 cut(s) 635
GlaI GCGC 1 cut(s) 40
GluI GCNGC 3 cut(s) 27, 90, 220
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 2 cut(s) 34, 395
HapII CCGG 5 cut(s) 17, 23, 98, 240, 396
HhaI GCGC 1 cut(s) 41
Hin1II CATG 3 cut(s) 181, 512, 611
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 2 cut(s) 166, 232
HindII GTYRAC 2 cut(s) 166, 232
HinfI GANTC 1 cut(s) 320
HpaII CCGG 5 cut(s) 17, 23, 98, 240, 396
HphI GGTGA 2 cut(s) 82, 121
Hpy166II GTNNAC 5 cut(s) 103, 150, 166, 232, 559
Hpy188I TCNGA 3 cut(s) 160, 263, 319
Hpy188III TCNNGA 4 cut(s) 212, 370, 517, 608
Hpy8I GTNNAC 5 cut(s) 103, 150, 166, 232, 559
HpyAV CCTTC 3 cut(s) 218, 343, 589
HpyCH4III ACNGT 3 cut(s) 67, 154, 556
HpyCH4V TGCA 4 cut(s) 364, 459, 499, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpyF3I CTNAG 1 cut(s) 316
Hsp92II CATG 3 cut(s) 181, 512, 611
HspAI GCGC 1 cut(s) 39
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 3 cut(s) 111, 328, 452
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 2 cut(s) 362, 529
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 1 cut(s) 635
MaeIII GTNAC 3 cut(s) 61, 398, 550
MalI GATC 3 cut(s) 113, 330, 454
MboI GATC 3 cut(s) 111, 328, 452
MboII GAAGA 4 cut(s) 133, 422, 546, 596
MflI RGATCY 2 cut(s) 328, 452
MhlI GDGCHC 2 cut(s) 77, 317
MluCI AATT 1 cut(s) 377
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 4 cut(s) 95, 133, 185, 299
Mph1103I ATGCAT 2 cut(s) 501, 544
MroNI GCCGGC 1 cut(s) 22
MseI TTAA 1 cut(s) 615
MspI CCGG 5 cut(s) 17, 23, 98, 240, 396
MspR9I CCNGG 3 cut(s) 98, 107, 392
MvaI CCWGG 2 cut(s) 107, 392
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 505
NaeI GCCGGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 98
NdeII GATC 3 cut(s) 111, 328, 452
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 3 cut(s) 181, 512, 611
NlaIV GGNNCC 1 cut(s) 21
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 61, 550
NsiI ATGCAT 2 cut(s) 501, 544
PagI TCATGA 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 24
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 3 cut(s) 28, 91, 221
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PshBI ATTAAT 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 105, 390
PspGI CCWGG 2 cut(s) 105, 390
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 32, 103
PsuI RGATCY 2 cut(s) 328, 452
RsaI GTAC 3 cut(s) 15, 95, 560
RsaNI GTAC 3 cut(s) 14, 94, 559
SacI GAGCTC 1 cut(s) 317
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 27, 90, 220
Sau3AI GATC 3 cut(s) 111, 328, 452
Sau96I GGNCC 2 cut(s) 32, 103
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 98, 107, 392
SduI GDGCHC 2 cut(s) 77, 317
SetI ASST 4 cut(s) 108, 177, 317, 432
SexAI ACCWGGT 1 cut(s) 105
SfaNI GCATC 2 cut(s) 362, 529
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 377
SsiI CCGC 5 cut(s) 26, 77, 217, 220, 630
SspMI CTAG 1 cut(s) 635
SstI GAGCTC 1 cut(s) 317
StyD4I CCNGG 3 cut(s) 96, 105, 390
TaaI ACNGT 3 cut(s) 67, 154, 556
TaqI TCGA 2 cut(s) 231, 570
TasI AATT 1 cut(s) 377
TauI GCSGC 2 cut(s) 29, 222
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 3 cut(s) 66, 346, 475
TseFI GTSAC 2 cut(s) 61, 550
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 2 cut(s) 61, 550
TspDTI ATGAA 2 cut(s) 571, 596
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 3 cut(s) 66, 346, 475
VpaK11BI GGWCC 1 cut(s) 103
VspI ATTAAT 1 cut(s) 615
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 635
Zsp2I ATGCAT 2 cut(s) 501, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.