Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006413

Physical Location & Seq

Genomic Coordinates Forward (+)

26611274 .. 26612283

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCGTTTGCGGTGCCTGTCCCTTCAGCTGGACCAAGCGCTCCGCCTCTGTCAAACCCCGTGGTCGTGGTCAACTCACAGTTCCTATCATCCTACCCTGTGGATCTAGTCATTAGCGAGAAGCTCATGACCATTAAGGAGGGCTCATTTTCTATCTCCGATGTTAACGGCAACGTCATGTTCAACGTTAAAGGTTCTGTTCTCAGCCTTCATGATCATCGTGTGTTGGTTGACAGCGCCGGTGCTCCAATCGTCACATTTCGACAAAAGATATTGACAGCGCATAGGAGATGGCAAGTATACAGAGGAGATAGCTCAGACAGCAAAGAGCTACTTTTTAGTGCCAAGAAGTCGGGGATTATTCAACTAAAGACTGAATTGGATGTGTTCTTGGCTTCTAACACAAAAGAAGACACCCATGATTTCAAGGTCAAAGGCAGTTTTAAGGAAAGATCATGCACCATATATACTAAAGAGAACACCATCATTGCACAAATGCATAAGCAAGGTGGTGTTAAAAATCGTGTGTTAGGACAAGATGCGTTTTCAGTGACAGTGTACCCTCAGGTTGATTTCGGATTTATAGTTGCTGTTGTGGTGATTCTTCATGAGATTAATCAGGATCGAAAGGGGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

214

Amino Acids

23.47

Weight (kDa)

8.59

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006413)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10370 FvH4_6g10371 FvH4_6g10380
malus_domestica	MD12G1183000.v1.1 MD12G1183400.v1.1
prunus_persica	Prupe.6G287600_v2.0.a1 Prupe.6G287800_v2.0.a1
pyrus_communis	pycom12g17190
rosa_chinensis	RchiOBHm_Chr3g0461221 RchiOBHm_Chr3g0461231
rosa_laevigata	RLG00000024945 RLG00000024946
rosa_multiflora	Rmu_sc0009344.1_g000010 Rmu_ssc0000326.1_g000014
rosa_roxburghii	Rroxscaffold_6G00418780 Rroxscaffold_6G00418800
rosa_rugosa	Rorug03G0049000 Rorug03G0049100
rosa_samantha	Rh3AG106300 Rh3AG106400 Rh3BG110500 Rh3BG110600 Rh3CG112200 Rh3CG112300 Rh3DG112400
rosa_wichuraiana	Rw3G009100 Rw3G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	2 cut(s)	11, 44
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	2 cut(s)	111, 630
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	560
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	184, 365, 427
AluBI	AGCT	4 cut(s)	29, 124, 315, 331
AluI	AGCT	4 cut(s)	29, 124, 315, 331
Alw21I	GWGCWC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	111, 630
Aor51HI	AGCGCT	1 cut(s)	40
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	3 cut(s)	41, 239, 283
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	247
BccI	CCATC	2 cut(s)	285, 491
BceAI	ACGGC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	214
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	2 cut(s)	42, 240
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	15
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	239
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	89, 388
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	217, 330, 578
BseRI	GAGGAG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	146, 247
Bsp143I	GATC	4 cut(s)	103, 214, 452, 622
BspACI	CCGC	2 cut(s)	11, 44
BspCNI	CTCAG	3 cut(s)	216, 329, 577
BspHI	TCATGA	3 cut(s)	126, 211, 607
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	111, 630
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	4 cut(s)	103, 214, 452, 622
BssNAI	GTATAC	1 cut(s)	301
Bst1107I	GTATAC	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	81, 556
BstDEI	CTNAG	3 cut(s)	203, 316, 564
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	89, 388
BstH2I	RGCGCY	2 cut(s)	42, 240
BstHHI	GCGC	3 cut(s)	41, 239, 283
BstKTI	GATC	4 cut(s)	106, 217, 455, 625
BstMBI	GATC	4 cut(s)	103, 214, 452, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	301
Bsu36I	CCTNAGG	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	89, 388
BtsIMutI	CAGTG	2 cut(s)	555, 561
CciI	TCATGA	3 cut(s)	126, 211, 607
CfoI	GCGC	3 cut(s)	41, 239, 283
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	559
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	6 cut(s)	127, 178, 212, 419, 456, 608
CviJI	RGCY	7 cut(s)	29, 124, 144, 207, 315, 331, 395
CviKI_1	RGCY	7 cut(s)	29, 124, 144, 207, 315, 331, 395
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	3 cut(s)	203, 316, 564
DpnI	GATC	4 cut(s)	105, 216, 454, 624
DpnII	GATC	4 cut(s)	103, 214, 452, 622
EciI	GGCGGA	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	32
Eco47III	AGCGCT	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	146
FaeI	CATG	6 cut(s)	130, 181, 215, 422, 459, 611
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	6 cut(s)	126, 177, 211, 418, 455, 607
FbaI	TGATCA	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	300
FokI	GGATG	2 cut(s)	76, 395
FriOI	GRGCYC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	3 cut(s)	40, 238, 282
HaeII	RGCGCY	2 cut(s)	42, 240
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	3 cut(s)	41, 239, 283
Hin1II	CATG	6 cut(s)	130, 181, 215, 422, 459, 611
Hin6I	GCGC	3 cut(s)	39, 237, 281
HinP1I	GCGC	3 cut(s)	39, 237, 281
HincII	GTYRAC	3 cut(s)	73, 166, 232
HindII	GTYRAC	3 cut(s)	73, 166, 232
HinfI	GANTC	1 cut(s)	601
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	5 cut(s)	73, 166, 232, 301, 559
Hpy188I	TCNGA	3 cut(s)	160, 319, 578
Hpy188III	TCNNGA	4 cut(s)	127, 212, 608, 620
Hpy8I	GTNNAC	5 cut(s)	73, 166, 232, 301, 559
HpyAV	CCTTC	2 cut(s)	33, 218
HpyCH4III	ACNGT	2 cut(s)	81, 556
HpyCH4IV	ACGT	2 cut(s)	174, 186
HpyCH4V	TGCA	3 cut(s)	459, 491, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	3 cut(s)	203, 316, 564
HpySE526I	ACGT	2 cut(s)	174, 186
Hsp92II	CATG	6 cut(s)	130, 181, 215, 422, 459, 611
HspAI	GCGC	3 cut(s)	39, 237, 281
Ksp22I	TGATCA	1 cut(s)	214
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	103, 214, 452, 622
LmnI	GCTCC	2 cut(s)	46, 250
LpnPI	CCDG	6 cut(s)	15, 30, 111, 253, 551, 605
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	2 cut(s)	174, 186
MaeIII	GTNAC	2 cut(s)	253, 550
MalI	GATC	4 cut(s)	105, 216, 454, 624
MboI	GATC	4 cut(s)	103, 214, 452, 622
MboII	GAAGA	2 cut(s)	422, 596
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	146, 247
MluCI	AATT	1 cut(s)	377
MnlI	CCTC	4 cut(s)	57, 133, 299, 573
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	6 cut(s)	135, 165, 189, 444, 516, 615
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	321
NdeII	GATC	4 cut(s)	103, 214, 452, 622
NlaIII	CATG	6 cut(s)	130, 181, 215, 422, 459, 611
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	253, 550
NsiI	ATGCAT	1 cut(s)	501
PagI	TCATGA	3 cut(s)	126, 211, 607
PfeI	GAWTC	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	615
Psp1406I	AACGTT	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SaqAI	TTAA	6 cut(s)	135, 165, 189, 444, 516, 615
Sau3AI	GATC	4 cut(s)	103, 214, 452, 622
Sau96I	GGNCC	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	146, 247
SfaNI	GCATC	1 cut(s)	529
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	32
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	2 cut(s)	11, 44
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	81, 556
TaiI	ACGT	2 cut(s)	177, 189
TaqI	TCGA	2 cut(s)	262, 625
TasI	AATT	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	6 cut(s)	135, 165, 189, 444, 516, 615
Tru9I	TTAA	6 cut(s)	135, 165, 189, 444, 516, 615
TscAI	CASTG	2 cut(s)	555, 561
TseFI	GTSAC	2 cut(s)	253, 550
Tsp45I	GTSAC	2 cut(s)	253, 550
TspDTI	ATGAA	2 cut(s)	200, 596
TspRI	CASTG	2 cut(s)	555, 561
VpaK11BI	GGWCC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.