Rh3AG106300

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006413
Physical Location & Seq
Forward (+)
8975686 .. 8977775
2090 bp
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UTR
Exon/CDS
Intron
Rh3AG106300.1

Sequence Viewer

Length: 573 bp
ATGTCCTATGCCGTGCCGGTGCCTGCGGCTGGGCCGAGCTCTCAGCCGCTGGCAAACCCCGTGACGGTGGTTAGCCCGCAGTTCCAAGCAACCTACCCTGTGGATCTGGTCATCACGGAGAAGATGGTGTCGATCAAGGAAGGTGCTTTTACAGTGTCAGACGTTAATGGAAATGTCATGTTCCAGATTAAAGGCTCCTTGTTCAGCTTTCATGATCGTCGAACTTTGGTCGACAGCGCCGGCACTCCTATAGTCTCCTTCCGACAAAAGATATTGACGGCACATAGGAGATGGCACGTATTTAGAGGAGAGAGCTCAGACGCCAAAGATCTACTCTTTAGTGTCAAAAAGTCATCCCTTTTTCAACTGAAGACAGAATTAGATGTGTTCTTGGCTGTTAATACTAAAGAACAAGCGTACGATTTCAAGGTCAAAGGAAGCTGGGGGGAAAGATCATGCACCATATATGATGGAAACAACAATATTATTGCACAAGTAAGAATTCATTTTCCGATCTTCGTCAATTCCATCATCATCATCATGACTGATATAAGTAGTCATAATATACAATAA

Protein Analysis

190

Amino Acids

21.17

Weight (kDa)

9.04

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 34 - 169 5.2e-38 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 231
AciI CCGC 3 cut(s) 26, 47, 77
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 501
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 29, 64
AgsI TTSAA 2 cut(s) 365, 427
AluBI AGCT 4 cut(s) 39, 207, 315, 441
AluI AGCT 4 cut(s) 39, 207, 315, 441
Alw21I GWGCWC 2 cut(s) 41, 317
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 501
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 2 cut(s) 41, 317
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 2 cut(s) 41, 317
BccI CCATC 4 cut(s) 118, 285, 464, 536
BceAI ACGGC 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 240
BglII AGATCT 1 cut(s) 328
BisI GCNGC 2 cut(s) 27, 47
BlsI GCNGC 2 cut(s) 28, 48
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 21, 196
BpiI GAAGAC 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 64
Bse118I RCCGGY 2 cut(s) 16, 239
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 29, 64
BseMII CTCAG 2 cut(s) 56, 330
BseRI GAGGAG 1 cut(s) 321
BseYI CCCAGC 2 cut(s) 29, 441
BshFI GGCC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 41, 317
BsiSI CCGG 2 cut(s) 17, 240
BsiWI CGTACG 1 cut(s) 417
BslI CCNNNNNNNGG 2 cut(s) 29, 64
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 41, 317
Bsp143I GATC 6 cut(s) 103, 132, 214, 328, 452, 513
BspACI CCGC 3 cut(s) 26, 47, 77
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 55, 329
BspHI TCATGA 2 cut(s) 211, 540
BspLI GGNNCC 2 cut(s) 21, 196
BspPI GGATC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 19
BsrFI RCCGGY 2 cut(s) 16, 239
BssAI RCCGGY 2 cut(s) 16, 239
BssMI GATC 6 cut(s) 103, 132, 214, 328, 452, 513
BssNI GRCGYC 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 67, 154
BstACI GRCGYC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 4 cut(s) 24, 51, 77, 241
BstDEI CTNAG 2 cut(s) 42, 316
BstF5I GGATG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 6 cut(s) 106, 135, 217, 331, 455, 516
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 6 cut(s) 103, 132, 214, 328, 452, 513
BstSFI CTRYAG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 103, 328
BstYI RGATCY 2 cut(s) 103, 328
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 4 cut(s) 24, 51, 77, 241
CaiI CAGNNNCTG 1 cut(s) 49
CciI TCATGA 2 cut(s) 211, 540
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 2 cut(s) 16, 239
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 418
CviAII CATG 4 cut(s) 178, 212, 456, 541
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 42, 316
DpnI GATC 6 cut(s) 105, 134, 216, 330, 454, 515
DpnII GATC 6 cut(s) 103, 132, 214, 328, 452, 513
Ecl136II GAGCTC 2 cut(s) 39, 315
Eco24I GRGCYC 2 cut(s) 41, 317
Eco53kI GAGCTC 2 cut(s) 39, 315
Eco57I CTGAAG 1 cut(s) 389
EcoICRI GAGCTC 2 cut(s) 39, 315
EcoRI GAATTC 1 cut(s) 501
EcoT38I GRGCYC 2 cut(s) 41, 317
FaeI CATG 4 cut(s) 181, 215, 459, 544
FatI CATG 4 cut(s) 177, 211, 455, 540
FauI CCCGC 1 cut(s) 84
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 27, 47
FokI GGATG 1 cut(s) 340
FriOI GRGCYC 2 cut(s) 41, 317
Fsp4HI GCNGC 2 cut(s) 27, 47
GlaI GCGC 1 cut(s) 238
GluI GCNGC 2 cut(s) 27, 47
GsaI CCCAGC 2 cut(s) 33, 445
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 1 cut(s) 34
HapII CCGG 2 cut(s) 17, 240
HgaI GACGC 1 cut(s) 329
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 4 cut(s) 181, 215, 459, 544
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HpaII CCGG 2 cut(s) 17, 240
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 4 cut(s) 160, 263, 319, 513
Hpy188III TCNNGA 3 cut(s) 184, 212, 541
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 134, 268
HpyCH4III ACNGT 2 cut(s) 67, 154
HpyCH4IV ACGT 2 cut(s) 162, 297
HpyCH4V TGCA 2 cut(s) 459, 491
HpyF3I CTNAG 2 cut(s) 42, 316
HpySE526I ACGT 2 cut(s) 162, 297
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 4 cut(s) 181, 215, 459, 544
HspAI GCGC 1 cut(s) 237
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Kzo9I GATC 6 cut(s) 103, 132, 214, 328, 452, 513
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 9 cut(s) 15, 30, 35, 36, 92, 111, 197, 253, 427
MaeII ACGT 2 cut(s) 162, 297
MaeIII GTNAC 1 cut(s) 61
MalI GATC 6 cut(s) 105, 134, 216, 330, 454, 515
MboI GATC 6 cut(s) 103, 132, 214, 328, 452, 513
MboII GAAGA 3 cut(s) 133, 382, 508
MflI RGATCY 2 cut(s) 103, 328
MhlI GDGCHC 2 cut(s) 41, 317
MluCI AATT 3 cut(s) 377, 501, 523
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 1 cut(s) 299
MroNI GCCGGC 1 cut(s) 239
MseI TTAA 3 cut(s) 165, 189, 399
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 2 cut(s) 17, 240
NaeI GCCGGC 1 cut(s) 241
NdeII GATC 6 cut(s) 103, 132, 214, 328, 452, 513
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 4 cut(s) 181, 215, 459, 544
NlaIV GGNNCC 2 cut(s) 21, 196
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 2 cut(s) 211, 540
PdiI GCCGGC 1 cut(s) 241
Pfl23II CGTACG 1 cut(s) 417
PkrI GCNGC 2 cut(s) 28, 48
Ppu21I YACGTR 1 cut(s) 298
Psp124BI GAGCTC 2 cut(s) 41, 317
PspFI CCCAGC 2 cut(s) 29, 441
PspLI CGTACG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 21, 196
PspPI GGNCC 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 2 cut(s) 103, 328
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 2 cut(s) 41, 317
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 165, 189, 399
SatI GCNGC 2 cut(s) 27, 47
Sau3AI GATC 6 cut(s) 103, 132, 214, 328, 452, 513
Sau96I GGNCC 1 cut(s) 32
SduI GDGCHC 2 cut(s) 41, 317
SetI ASST 9 cut(s) 41, 95, 145, 165, 209, 300, 317, 432, 443
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 539
Sse9I AATT 3 cut(s) 377, 501, 523
SsiI CCGC 3 cut(s) 26, 47, 77
SspI AATATT 1 cut(s) 484
SstI GAGCTC 2 cut(s) 41, 317
TaaI ACNGT 2 cut(s) 67, 154
TaiI ACGT 2 cut(s) 165, 300
TaqI TCGA 3 cut(s) 131, 220, 231
TasI AATT 3 cut(s) 377, 501, 523
TauI GCSGC 2 cut(s) 29, 49
Tru1I TTAA 3 cut(s) 165, 189, 399
Tru9I TTAA 3 cut(s) 165, 189, 399
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 200, 494
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 159
XapI RAATTY 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.