Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006413

Physical Location & Seq

Genomic Coordinates Reverse (-)

40346419 .. 40348215

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCGTATGCTGTGCCAGTACCTGCGACTGGGCCGAGCGCTCAGCCTCTGGCCAACCCCATTACGGTGGTCAGCCCGCAGTTCCAAGCAACCTACCCTGTGGATCTGGTCATCACGGAGAAGATGATGACGATCAAGGAAGGTGATTTTACAGTGTCGGACGTTAATGGAAATGTCATGTTCCAGGTCAAGGGCTCCCTTTTCAGCCTTCATGATCGTCGGACTCTGGTCGACAGCGCCGGCACTCCTATCCTCTCCTTCCGACAAAAAATAATGACAGCACATAGGAGATGGCACGTATTCAGAGGAGAGAGCTCAGACGAAAAAGATCTACTCTTCACTGCCAGGAAGTCATCCTTTTTCCAGCTCAAGACTGAATTAGATGTGTTCTTGGCTGGTAACACTAAAGAAGAAGCTTACGATTTCAAGGTCAAAGGAAGCTGGGGGAAAGATCATGCACCATATATAATGGAGACAACACTATCATTGCACAAATGCACAAGAAACATGATCTTAAAAGTAGTTTGTTTGGGAGAGATGCGTTCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

183

Amino Acids

20.58

Weight (kDa)

8.87

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	34 - 151	6.9e-33	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006413)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10370 FvH4_6g10371 FvH4_6g10380
malus_domestica	MD12G1183000.v1.1 MD12G1183400.v1.1
prunus_persica	Prupe.6G287600_v2.0.a1 Prupe.6G287800_v2.0.a1
pyrus_communis	pycom12g17190
rosa_chinensis	RchiOBHm_Chr3g0461221 RchiOBHm_Chr3g0461231
rosa_laevigata	RLG00000024945 RLG00000024946
rosa_multiflora	Rmu_sc0009344.1_g000010 Rmu_ssc0000326.1_g000014
rosa_roxburghii	Rroxscaffold_6G00418780 Rroxscaffold_6G00418800
rosa_rugosa	Rorug03G0049000 Rorug03G0049100
rosa_samantha	Rh3AG106300 Rh3AG106400 Rh3BG110500 Rh3BG110600 Rh3CG112200 Rh3CG112300 Rh3DG112400
rosa_wichuraiana	Rw3G009100 Rw3G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	51
AfaI	GTAC	1 cut(s)	21
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	29, 64, 190
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	183, 344
AluBI	AGCT	4 cut(s)	315, 367, 416, 441
AluI	AGCT	4 cut(s)	315, 367, 416, 441
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	2 cut(s)	23, 49
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	2 cut(s)	32, 51
AspLEI	GCGC	2 cut(s)	41, 239
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	197, 317
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	185, 346
BcoDI	GTCTC	1 cut(s)	467
BfoI	RGCGCY	2 cut(s)	42, 240
BfuAI	ACCTGC	1 cut(s)	31
BglII	AGATCT	1 cut(s)	328
BlpI	GCTNAGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	185, 346
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	185, 346
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	39
BoxI	GACNNNNGTC	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 64, 190
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	17, 34
Bse3DI	GCAATG	1 cut(s)	485
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	185, 346
BseGI	GGATG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	3 cut(s)	29, 64, 190
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	56, 330
BseNI	ACTGG	2 cut(s)	17, 34
BseRI	GAGGAG	1 cut(s)	321
BseYI	CCCAGC	1 cut(s)	441
BshFI	GGCC	2 cut(s)	34, 53
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	3 cut(s)	29, 64, 190
BsmAI	GTCTC	1 cut(s)	467
BsnI	GGCC	2 cut(s)	34, 53
Bsp1286I	GDGCHC	2 cut(s)	197, 317
Bsp143I	GATC	6 cut(s)	103, 132, 214, 328, 451, 510
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	34, 53
BspCNI	CTCAG	2 cut(s)	55, 329
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	17, 34
BssAI	RCCGGY	1 cut(s)	239
BssMI	GATC	6 cut(s)	103, 132, 214, 328, 451, 510
Bst2UI	CCWGG	2 cut(s)	185, 346
Bst4CI	ACNGT	2 cut(s)	67, 154
Bst6I	CTCTTC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	77, 241
BstDEI	CTNAG	3 cut(s)	42, 316, 546
BstF5I	GGATG	1 cut(s)	353
BstH2I	RGCGCY	2 cut(s)	42, 240
BstHHI	GCGC	2 cut(s)	41, 239
BstKTI	GATC	6 cut(s)	106, 135, 217, 331, 454, 513
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	6 cut(s)	103, 132, 214, 328, 451, 510
BstNI	CCWGG	2 cut(s)	185, 346
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	183, 344
BstX2I	RGATCY	2 cut(s)	103, 328
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	2 cut(s)	103, 328
BsuRI	GGCC	2 cut(s)	34, 53
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	159, 339
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	77, 241
CaiI	CAGNNNCTG	2 cut(s)	23, 49
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	2 cut(s)	41, 239
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	4 cut(s)	178, 212, 455, 508
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	3 cut(s)	42, 316, 546
DpnI	GATC	6 cut(s)	105, 134, 216, 330, 453, 512
DpnII	GATC	6 cut(s)	103, 132, 214, 328, 451, 510
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	2 cut(s)	197, 317
Eco47III	AGCGCT	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	183, 344
EcoT38I	GRGCYC	2 cut(s)	197, 317
FaeI	CATG	4 cut(s)	181, 215, 458, 511
FaiI	YATR	9 cut(s)	9, 179, 213, 285, 456, 463, 465, 467, 509
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	4 cut(s)	177, 211, 454, 507
FauI	CCCGC	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	231
FokI	GGATG	1 cut(s)	340
FriOI	GRGCYC	2 cut(s)	197, 317
GlaI	GCGC	2 cut(s)	40, 238
GsaI	CCCAGC	1 cut(s)	445
HaeII	RGCGCY	2 cut(s)	42, 240
HaeIII	GGCC	2 cut(s)	34, 53
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	2 cut(s)	41, 239
Hin1II	CATG	4 cut(s)	181, 215, 458, 511
Hin6I	GCGC	2 cut(s)	39, 237
HinP1I	GCGC	2 cut(s)	39, 237
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	5 cut(s)	160, 222, 263, 305, 319
Hpy188III	TCNNGA	2 cut(s)	212, 370
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	134, 218, 268
HpyCH4III	ACNGT	2 cut(s)	67, 154
HpyCH4IV	ACGT	2 cut(s)	162, 297
HpyCH4V	TGCA	3 cut(s)	458, 490, 498
HpyF3I	CTNAG	3 cut(s)	42, 316, 546
HpySE526I	ACGT	2 cut(s)	162, 297
Hsp92II	CATG	4 cut(s)	181, 215, 458, 511
HspAI	GCGC	2 cut(s)	39, 237
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	6 cut(s)	103, 132, 214, 328, 451, 510
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	1 cut(s)	528
MaeII	ACGT	2 cut(s)	162, 297
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	6 cut(s)	105, 134, 216, 330, 453, 512
MboI	GATC	6 cut(s)	103, 132, 214, 328, 451, 510
MboII	GAAGA	3 cut(s)	133, 328, 422
MflI	RGATCY	2 cut(s)	103, 328
MhlI	GDGCHC	2 cut(s)	197, 317
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	377
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	3 cut(s)	138, 200, 286
MnlI	CCTC	3 cut(s)	57, 263, 299
Mox20I	TGGCCA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	2 cut(s)	165, 515
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	185, 346
MvaI	CCWGG	2 cut(s)	185, 346
NaeI	GCCGGC	1 cut(s)	241
NdeII	GATC	6 cut(s)	103, 132, 214, 328, 451, 510
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	4 cut(s)	181, 215, 458, 511
NlaIV	GGNNCC	1 cut(s)	196
NmeAIII	GCCGAG	1 cut(s)	60
PagI	TCATGA	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	183, 344
PspFI	CCCAGC	1 cut(s)	441
PspGI	CCWGG	2 cut(s)	183, 344
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	32
PstNI	CAGNNNCTG	2 cut(s)	23, 49
PsuI	RGATCY	2 cut(s)	103, 328
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	165, 515
Sau3AI	GATC	6 cut(s)	103, 132, 214, 328, 451, 510
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	185, 346
SduI	GDGCHC	2 cut(s)	197, 317
SfaNI	GCATC	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	183, 344
TaaI	ACNGT	2 cut(s)	67, 154
TaiI	ACGT	2 cut(s)	165, 300
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	165, 515
Tru9I	TTAA	2 cut(s)	165, 515
TscAI	CASTG	2 cut(s)	159, 346
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	159, 346
XmiI	GTMKAC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.