Rroxscaffold_6G00418800

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006413
Physical Location & Seq
Reverse (-)
40366422 .. 40368177
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418800.1

Sequence Viewer

Length: 576 bp
ATGTCCTATGCCGTGCCAGTGCCTGCGGCCGGGCCGAGCTCTCAGCCGCTGGCAAATCCCGTGACGGTGGTTAGCCCGCAGTTCCAAGCAACCTACCCTGTGGATCTGGTCATCACGGAGAAGATGATGTCGATCAAGGAAGGTGCTTTTACAGTGTCAGACGTTAATGGAAATGTCATGTTCCAGATTAAAGGCTCCTTGTTCAGCTTTCATGATCGTCGAACTTTGGTCGACAGCTCCGGCACTCCTATAGTCTCCTTCCGACAAAAGATATTGACGGCACATAGGAGATGGCACGTATTTAGAGGAGAGAGCTCAGACGCCAAAGATCTACTCTTTAGTGTCAAAAAGTCATCCCTTTTCCAACTGAAGACAGAATTAGATGTGTTCTTGGCTGTTAATACTAAAGAACAAGCGTACGATTTCAAGATGCACACGAAACATGATCTTAAAAGTATATTCTTTGGGAGAGATGCGTTTGCGGTTACTGTGTATCCTCATGTTGATTACGCCTTTATAGTTGCCATTGTGGTTGTTCTTCATGAGATTAACATGGACAGAAGTGGGCAGGACTGA

Protein Analysis

191

Amino Acids

21.4

Weight (kDa)

7.99

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 34 - 180 4e-35 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AciI CCGC 4 cut(s) 26, 47, 77, 482
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 427
AluBI AGCT 4 cut(s) 39, 207, 237, 315
AluI AGCT 4 cut(s) 39, 207, 237, 315
Alw21I GWGCWC 2 cut(s) 41, 317
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 2 cut(s) 23, 49
AoxI GGCC 2 cut(s) 27, 32
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 31
BanII GRGCYC 2 cut(s) 41, 317
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 2 cut(s) 41, 317
BccI CCATC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 294
BciVI GTATCC 1 cut(s) 504
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 249
BfuI GTATCC 1 cut(s) 504
BglII AGATCT 1 cut(s) 328
BisI GCNGC 2 cut(s) 27, 47
BlsI GCNGC 2 cut(s) 28, 48
Bme1390I CCNGG 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 420, 463
BpiI GAAGAC 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 17
Bse8I GATNNNNATC 1 cut(s) 131
BseGI GGATG 1 cut(s) 353
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 56, 330
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 321
BseX3I CGGCCG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 29, 34
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 41, 317
BsiSI CCGG 2 cut(s) 30, 240
BsiWI CGTACG 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 2 cut(s) 29, 34
Bsp1286I GDGCHC 2 cut(s) 41, 317
Bsp143I GATC 5 cut(s) 103, 132, 214, 328, 445
BspACI CCGC 4 cut(s) 26, 47, 77, 482
BspANI GGCC 2 cut(s) 29, 34
BspCNI CTCAG 2 cut(s) 55, 329
BspHI TCATGA 2 cut(s) 211, 541
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 17
BssMI GATC 5 cut(s) 103, 132, 214, 328, 445
BssNI GRCGYC 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 67, 154, 490
BstACI GRCGYC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 24, 51, 77
BstDEI CTNAG 2 cut(s) 42, 316
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 5 cut(s) 106, 135, 217, 331, 448
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 5 cut(s) 103, 132, 214, 328, 445
BstMCI CGRYCG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 103, 328
BstYI RGATCY 2 cut(s) 103, 328
BstZI CGGCCG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 2 cut(s) 29, 34
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 24, 159
Cac8I GCNNGC 3 cut(s) 24, 51, 77
CaiI CAGNNNCTG 2 cut(s) 23, 49
CciI TCATGA 2 cut(s) 211, 541
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 418
CviAII CATG 6 cut(s) 178, 212, 443, 500, 542, 553
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 42, 316
DpnI GATC 5 cut(s) 105, 134, 216, 330, 447
DpnII GATC 5 cut(s) 103, 132, 214, 328, 445
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Ecl136II GAGCTC 2 cut(s) 39, 315
EclXI CGGCCG 1 cut(s) 27
Eco24I GRGCYC 2 cut(s) 41, 317
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 2 cut(s) 39, 315
Eco57I CTGAAG 1 cut(s) 389
EcoICRI GAGCTC 2 cut(s) 39, 315
EcoT38I GRGCYC 2 cut(s) 41, 317
FaeI CATG 6 cut(s) 181, 215, 446, 503, 545, 556
FatI CATG 6 cut(s) 177, 211, 442, 499, 541, 552
FauI CCCGC 1 cut(s) 84
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 27, 47
FokI GGATG 1 cut(s) 340
FriOI GRGCYC 2 cut(s) 41, 317
Fsp4HI GCNGC 2 cut(s) 27, 47
GluI GCNGC 2 cut(s) 27, 47
HaeIII GGCC 2 cut(s) 29, 34
HapII CCGG 2 cut(s) 30, 240
HgaI GACGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 6 cut(s) 181, 215, 446, 503, 545, 556
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HpaII CCGG 2 cut(s) 30, 240
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 160, 263, 319
Hpy188III TCNNGA 4 cut(s) 184, 212, 427, 542
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 134, 268
HpyCH4III ACNGT 3 cut(s) 67, 154, 490
HpyCH4IV ACGT 2 cut(s) 162, 297
HpyCH4V TGCA 1 cut(s) 433
HpyF3I CTNAG 2 cut(s) 42, 316
HpySE526I ACGT 2 cut(s) 162, 297
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 6 cut(s) 181, 215, 446, 503, 545, 556
Kzo9I GATC 5 cut(s) 103, 132, 214, 328, 445
LmnI GCTCC 2 cut(s) 200, 242
LpnPI CCDG 9 cut(s) 30, 35, 36, 43, 92, 111, 197, 253, 554
LweI GCATC 2 cut(s) 420, 463
MaeII ACGT 2 cut(s) 162, 297
MaeIII GTNAC 2 cut(s) 61, 484
MalI GATC 5 cut(s) 105, 134, 216, 330, 447
MboI GATC 5 cut(s) 103, 132, 214, 328, 445
MboII GAAGA 3 cut(s) 133, 382, 530
MflI RGATCY 2 cut(s) 103, 328
MhlI GDGCHC 2 cut(s) 41, 317
MluCI AATT 1 cut(s) 377
MmeI TCCRAC 2 cut(s) 286, 388
MnlI CCTC 2 cut(s) 299, 507
MseI TTAA 5 cut(s) 165, 189, 399, 450, 549
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 2 cut(s) 30, 240
MspR9I CCNGG 1 cut(s) 31
NciI CCSGG 1 cut(s) 31
NdeII GATC 5 cut(s) 103, 132, 214, 328, 445
NlaIII CATG 6 cut(s) 181, 215, 446, 503, 545, 556
NlaIV GGNNCC 1 cut(s) 196
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 2 cut(s) 211, 541
Pfl23II CGTACG 1 cut(s) 417
PkrI GCNGC 2 cut(s) 28, 48
Ppu21I YACGTR 1 cut(s) 298
Psp124BI GAGCTC 2 cut(s) 41, 317
PspLI CGTACG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 32
PstNI CAGNNNCTG 2 cut(s) 23, 49
PsuI RGATCY 2 cut(s) 103, 328
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SacI GAGCTC 2 cut(s) 41, 317
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 5 cut(s) 165, 189, 399, 450, 549
SatI GCNGC 2 cut(s) 27, 47
Sau3AI GATC 5 cut(s) 103, 132, 214, 328, 445
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 2 cut(s) 41, 317
SetI ASST 8 cut(s) 41, 95, 145, 165, 209, 239, 300, 317
SfaNI GCATC 2 cut(s) 420, 463
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 1 cut(s) 377
SsiI CCGC 4 cut(s) 26, 47, 77, 482
SstI GAGCTC 2 cut(s) 41, 317
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 67, 154, 490
TaiI ACGT 2 cut(s) 165, 300
TaqI TCGA 3 cut(s) 131, 220, 231
TasI AATT 1 cut(s) 377
TauI GCSGC 2 cut(s) 29, 49
Tru1I TTAA 5 cut(s) 165, 189, 399, 450, 549
Tru9I TTAA 5 cut(s) 165, 189, 399, 450, 549
TscAI CASTG 2 cut(s) 24, 159
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 200, 530
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 2 cut(s) 24, 159
XmiI GTMKAC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.