Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006413

Physical Location & Seq

Genomic Coordinates Forward (+)

8982244 .. 8983700

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG112300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCGTATGCTGTGCCGGTACCTGCGACTGGGCCGAGCGCTCAGCCTCTGGCCAACCCCATTACGGTGGTCAGCCCGCAGTTCCAAGCAACCTACCCTGTGGATCTGGTCATCACGGAGAAGATGATGACGATCAAGGAAGGTGATTTTACAGTGTCGGACGTTAATGGAAATGTCATGTTCCAGGTCAAAGGCTCCCTTTTCAGCCTTCATGATCGTCGGACTTTGGTCGACAGCGCCGGCACTCCTATCCTCTCCTTCCGACAAAAGATAATGACAGCACATAAGAGATGGCACGTATTCAGAGGAGAGAGCTCAGACGAAAAGGATCTACTCTTCACTGCCAGGAAGTCATCCTTTTTCCAGCTCAAGACTGAATTAGATGTGTTCTTGGCTGGTAACACTAAAGAAGAAGCTTACGATTTCAAGGTCAAAGGAAGCTGGGGGGAAAGATCATGCACCATATATAATGGAGACAACACTATCATTGCACAAATGCACAAGAAACATGATCTTAAAAGTAGTTTGTTTGGGAGAGATGCGTTCTCAGTGACTGTGTATCCTCATGTTGATTATGCCTTTATAACTGCCATTGTGATTGTTCTTCATGAGATTAACATGGACAGAAGTGGGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

213

Amino Acids

23.89

Weight (kDa)

6.38

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	34 - 202	7e-54	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006413)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10370 FvH4_6g10371 FvH4_6g10380
malus_domestica	MD12G1183000.v1.1 MD12G1183400.v1.1
prunus_persica	Prupe.6G287600_v2.0.a1 Prupe.6G287800_v2.0.a1
pyrus_communis	pycom12g17190
rosa_chinensis	RchiOBHm_Chr3g0461221 RchiOBHm_Chr3g0461231
rosa_laevigata	RLG00000024945 RLG00000024946
rosa_multiflora	Rmu_sc0009344.1_g000010 Rmu_ssc0000326.1_g000014
rosa_roxburghii	Rroxscaffold_6G00418780 Rroxscaffold_6G00418800
rosa_rugosa	Rorug03G0049000 Rorug03G0049100
rosa_samantha	Rh3AG106300 Rh3AG106400 Rh3BG110500 Rh3BG110600 Rh3CG112200 Rh3CG112300 Rh3DG112400
rosa_wichuraiana	Rw3G009100 Rw3G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	111, 336
AcoI	YGGCCR	1 cut(s)	51
AfaI	GTAC	1 cut(s)	21
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	29, 64
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	183, 344
AluBI	AGCT	4 cut(s)	315, 367, 416, 441
AluI	AGCT	4 cut(s)	315, 367, 416, 441
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	111, 336
AlwNI	CAGNNNCTG	2 cut(s)	49, 554
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	2 cut(s)	32, 51
Asp718I	GGTACC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	41, 239
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	185, 346
BciVI	GTATCC	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	468
BfoI	RGCGCY	2 cut(s)	42, 240
BfuAI	ACCTGC	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	185, 346
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	21, 196
BmrFI	CCNGG	2 cut(s)	185, 346
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	39
BoxI	GACNNNNGTC	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 64
Bse118I	RCCGGY	2 cut(s)	16, 239
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	185, 346
BseGI	GGATG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	29, 64
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	56, 330, 561
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	321
BseYI	CCCAGC	1 cut(s)	441
BshFI	GGCC	2 cut(s)	34, 53
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	17, 240
BslI	CCNNNNNNNGG	2 cut(s)	29, 64
BsmAI	GTCTC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	34, 53
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	34, 53
BspCNI	CTCAG	3 cut(s)	55, 329, 560
BspHI	TCATGA	2 cut(s)	211, 607
BspLI	GGNNCC	2 cut(s)	21, 196
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	111, 336
BspT107I	GGYRCC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	2 cut(s)	16, 239
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	2 cut(s)	16, 239
BssMI	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
Bst2UI	CCWGG	2 cut(s)	185, 346
Bst4CI	ACNGT	3 cut(s)	67, 154, 556
Bst6I	CTCTTC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	77, 241
BstDEI	CTNAG	3 cut(s)	42, 316, 547
BstF5I	GGATG	1 cut(s)	353
BstH2I	RGCGCY	2 cut(s)	42, 240
BstHHI	GCGC	2 cut(s)	41, 239
BstKTI	GATC	6 cut(s)	106, 135, 217, 331, 455, 514
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
BstNI	CCWGG	2 cut(s)	185, 346
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	183, 344
BstX2I	RGATCY	2 cut(s)	103, 328
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	2 cut(s)	103, 328
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	2 cut(s)	34, 53
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	159, 339, 555
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	77, 241
CaiI	CAGNNNCTG	2 cut(s)	49, 554
CciI	TCATGA	2 cut(s)	211, 607
CfoI	GCGC	2 cut(s)	41, 239
Cfr10I	RCCGGY	2 cut(s)	16, 239
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	7 cut(s)	178, 212, 456, 509, 566, 608, 619
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	3 cut(s)	42, 316, 547
DpnI	GATC	6 cut(s)	105, 134, 216, 330, 454, 513
DpnII	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	317
Eco47III	AGCGCT	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	183, 344
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	7 cut(s)	181, 215, 459, 512, 569, 611, 622
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 341, 373
FatI	CATG	7 cut(s)	177, 211, 455, 508, 565, 607, 618
FauI	CCCGC	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	231
FokI	GGATG	1 cut(s)	340
FriOI	GRGCYC	1 cut(s)	317
GlaI	GCGC	2 cut(s)	40, 238
GsaI	CCCAGC	1 cut(s)	445
HaeII	RGCGCY	2 cut(s)	42, 240
HaeIII	GGCC	2 cut(s)	34, 53
HapII	CCGG	2 cut(s)	17, 240
HhaI	GCGC	2 cut(s)	41, 239
Hin1II	CATG	7 cut(s)	181, 215, 459, 512, 569, 611, 622
Hin6I	GCGC	2 cut(s)	39, 237
HinP1I	GCGC	2 cut(s)	39, 237
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	414
HpaII	CCGG	2 cut(s)	17, 240
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	5 cut(s)	160, 222, 263, 305, 319
Hpy188III	TCNNGA	3 cut(s)	212, 370, 608
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	134, 218, 268
HpyCH4III	ACNGT	3 cut(s)	67, 154, 556
HpyCH4IV	ACGT	2 cut(s)	162, 297
HpyCH4V	TGCA	3 cut(s)	459, 491, 499
HpyF3I	CTNAG	3 cut(s)	42, 316, 547
HpySE526I	ACGT	2 cut(s)	162, 297
Hsp92II	CATG	7 cut(s)	181, 215, 459, 512, 569, 611, 622
HspAI	GCGC	2 cut(s)	39, 237
KpnI	GGTACC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	1 cut(s)	529
MaeII	ACGT	2 cut(s)	162, 297
MaeIII	GTNAC	2 cut(s)	398, 550
MalI	GATC	6 cut(s)	105, 134, 216, 330, 454, 513
MboI	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
MboII	GAAGA	4 cut(s)	133, 328, 422, 596
MflI	RGATCY	2 cut(s)	103, 328
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	377
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	3 cut(s)	138, 200, 286
MnlI	CCTC	4 cut(s)	57, 263, 299, 573
Mox20I	TGGCCA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	3 cut(s)	165, 516, 615
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	2 cut(s)	17, 240
MspR9I	CCNGG	2 cut(s)	185, 346
MvaI	CCWGG	2 cut(s)	185, 346
NaeI	GCCGGC	1 cut(s)	241
NdeII	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	7 cut(s)	181, 215, 459, 512, 569, 611, 622
NlaIV	GGNNCC	2 cut(s)	21, 196
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	550
PagI	TCATGA	2 cut(s)	211, 607
PdiI	GCCGGC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	584
Psp124BI	GAGCTC	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	183, 344
PspFI	CCCAGC	1 cut(s)	441
PspGI	CCWGG	2 cut(s)	183, 344
PspN4I	GGNNCC	2 cut(s)	21, 196
PspPI	GGNCC	1 cut(s)	32
PstNI	CAGNNNCTG	2 cut(s)	49, 554
PsuI	RGATCY	2 cut(s)	103, 328
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	165, 516, 615
Sau3AI	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	185, 346
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	183, 344
TaaI	ACNGT	3 cut(s)	67, 154, 556
TaiI	ACGT	2 cut(s)	165, 300
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	377
Tru1I	TTAA	3 cut(s)	165, 516, 615
Tru9I	TTAA	3 cut(s)	165, 516, 615
TscAI	CASTG	3 cut(s)	159, 346, 555
TseFI	GTSAC	1 cut(s)	550
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	200, 596
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	159, 346, 555
XmiI	GTMKAC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.